Progressive Deep Snake for Instance Boundary Extraction in Medical Images

Installation

Please see INSTALL.md.

Data prepare

We provide preprocessed MRSpineSeg and Verse20 datasete. Please use the following links to download them:

• MRSpineSeg (code: 1234)
• Verse20 (code: 1234)

Then unzip them to ./data/dataset .

unzip MRSpineSeg.zip -d ./data/dataset/MRSpineSeg
unzip Verse20.zip -d ./data/dataset/Verse20

Training

Training on MRSpineSeg

1. Change the 'model_dir' in ./config.yaml to './data/model/MRSpineSeg';
2. Change 'data_path' to './data/MRSpineSeg'
3. Run the code:

python train_net.py

Training on Verse

1. Change the 'model_dir' in ./config.yaml to './data/model/Verse20';
2. Change 'data_path' to './data/dataset/Verse20'
3. Run the code:

python train_net.py

Testing

python test.py

Acknowledgment