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1. HoMi HoMi Public

   Host-microbiome dual transcriptome pipeline

   Python

2. HoMiStats HoMiStats Public

   Statistics for host-microbiome dual transcriptomics

   R

3. Effective-Snakemake-HPC Effective-Snakemake-HPC Public

   Resource for effectively using Snakemake on high performance compute clusters, with applications to metagenomics

   CSS

4. lozuponelab/SCNIC lozuponelab/SCNIC Public

   Sparse Cooccurence Network Investigation for Compositional data

   Python 23 12

5. KarstensLab/microshades KarstensLab/microshades Public

   This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

   R 51 11

6. H-pylori-microbiome-analysis H-pylori-microbiome-analysis Public

   Microbiome analysis for "Characterization of gut microbiome and metabolome in Helicobacter pylori patients in an underprivileged community in the Unites States"

   Jupyter Notebook 1