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BLAST results link goes to "page not found error" #603

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mestato opened this issue Sep 16, 2020 · 4 comments
Open

BLAST results link goes to "page not found error" #603

mestato opened this issue Sep 16, 2020 · 4 comments

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@mestato
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mestato commented Sep 16, 2020

Bug description

Reported by two users.

Screen Shot 2020-09-15 at 2 51 01 PM

Location

  • Go to '...'
  • Click on '....'
  • Scroll down to '....'

Screenshots

Additional info

@mestato
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mestato commented Sep 16, 2020

A bit more subtlety. If the user blasts against scaffolds of a genome, those should never link to anywhere (we don't store scaffolds as features). I don't actually know where they used to link to, have emailed user to find out.

Example link to a feature that does not work:
https://hardwoodgenomics.org/feature/lcl%7Ccontig0001299

RTD information on how custom linkouts are created:
https://tripal-blast-ui.readthedocs.io/en/latest/dev_guide/custom_linkouts.html

@mestato
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mestato commented Sep 16, 2020

Tried a blastn to the chestnut transcripts (as opposed to the scaffolds above) and link outs work fine.

@almasaeed2010
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We probably used to link out to JBrowse. I remember building a link that generates a track on jbrowse. The question is where did we add this functionality and how do we publish it?

@almasaeed2010
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Looks like we have a module named tripal_blast_jbrowse but for some reason it's not taking effect.

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