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Prunus persica (peach) Genome #588

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patricksis opened this issue May 15, 2020 · 3 comments
Open
13 tasks done

Prunus persica (peach) Genome #588

patricksis opened this issue May 15, 2020 · 3 comments

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@patricksis
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patricksis commented May 15, 2020 •
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Publication and Data Information

Data: https://genome.jgi.doe.gov/portal/pages/dynamicOrganismDownload.jsf?organism=Ppersica
Use Version 2

Additional Information

Checklist

See New Genome Documentation for detailed instructions.

  • Create Organism
  • Create Publication
  • Create Reference Genome
  • Create InterProScan Annotation
  • Create BLAST Annotation
  • Run Chado FASTA Loader for CDS
  • Run Chado FASTA Loader for Polypeptides
  • Publish Tripal content
  • Create KEGG Annotation
  • Run Chado KEGG Loader
  • Run Chado BLAST XML results loader
  • Run Chado InterProScan XML results loader
  • Create Blast Database
@patricksis
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patricksis commented May 15, 2020 •
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Organism:
https://hardwoodgenomics.org/organism/Prunus/persica
Publication:
https://hardwoodgenomics.org/Publication/3959658
References Genome:
https://hardwoodgenomics.org/Genome-assembly/3959659
Swissprot annotation:
https://hardwoodgenomics.org/BLAST-annotation/3959660
Trembl annotation:
https://hardwoodgenomics.org/BLAST-annotation/3959661
IPS annotation:
https://hardwoodgenomics.org/InterProScan-annotation/3959662
FASTA loader (CDS):
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/877039
FASTA loader (Peptides):
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/877042
Trembl xml loader:
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/879696
swissprot xml loader:
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/879701
IPS xml loader:
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/879712
KEGG annotation:
https://hardwoodgenomics.org/KEGGresults/4073198
KEGG loader:
https://hardwoodgenomics.org/admin/tripal/tripal_jobs/view/879723

@patricksis
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bdb (transcripts):
https://hardwoodgenomics.org/content/prunus-persica-transcripts
bdb (peptides):
https://hardwoodgenomics.org/content/prunus-persica-peptides
bdb (scaffolds):
https://hardwoodgenomics.org/content/prunus-persica-scaffolds

@patricksis
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Jbrowse:
https://hardwoodgenomics.org/admin/tripal/extension/tripal_jbrowse/management/instances/33

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@patricksis