README.md

The Hardwoods Genomic Project

This repository is primarily for tracking Hardwoods issues.

This includes:

• Bug reports
• Data to load
• General site features

This repository is not for code-based issues, per se. But, if a problem iwth our code is causing an issue on Hardwoods, we can keep track of it here too. Please use the individual module repositories that host the code (see below).

HWG

• Hardwoods site index You Are Here
• Hardwood Bootstrap Theme
• Hardwoods help

Tripal

Flashy collection of Statonlab Tripal Modules website/repo

Core Modules

• Tripal
• Analysis Blast
• Galaxy
• Analysis GO
• Analysis KEGG
• Analysis Interpro

Staton Modules

• Analysis Expression
• Elasticsearch
• Ortholog
• Jbrowse
• Transcriptomes Table
• SSR
• CV X-ray
• Manage Analyses. Provides analysis browser fields. Library browser field.
• cmap field and loader

Dev Tools

• Mini Dataset DevSeed
• Fields Generator
• Alchemist
• TripalDock
  • Base Docker images
• Tripal Property Curations
• Tripal Tests

Treesnap

• TreeSnap web
• TreeSnap mobile