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Welcome to the NF_workshop wiki!

Agenda

• Day 1 - Tuesday, January 16
• Day 2 - Wednesday, January 17
• Day 3 - Thursday, January 18

Before the workshop begins, please check out:

Set up UT linux account and environment

Data used in this course:

We'll be using a practice RNA-Seq dataset from the Griffith Lab. If you would like to practice on an alternative small dataset consisting of fastq files, you are welcome to do so.

Other useful resources:

Nextflow:

• Nextflow recommended training materials
• Software Carpentries Nextflow Lessons (in development)
• Nextflow Slack Channel
• NF-core

Containers:

• Moreau et al 2023 Containers for computational reproducibility
• BioContainers recipes