From ff4846920d326733b920bb351dfeae004048c413 Mon Sep 17 00:00:00 2001 From: Luiz Irber Date: Tue, 21 Nov 2023 17:38:28 -0800 Subject: [PATCH] update deps --- Cargo.lock | 263 ++++------------------------------------------------- Cargo.toml | 2 +- 2 files changed, 17 insertions(+), 248 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 08ef6a0b..4391cffd 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -8,17 +8,6 @@ version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" -[[package]] -name = "aes" -version = "0.8.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ac1f845298e95f983ff1944b728ae08b8cebab80d684f0a832ed0fc74dfa27e2" -dependencies = [ - "cfg-if", - "cipher", - "cpufeatures", -] - [[package]] name = "ahash" version = "0.7.6" @@ -105,12 +94,6 @@ version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7b7e4c2464d97fe331d41de9d5db0def0a96f4d823b8b32a2efd503578988973" -[[package]] -name = "base64ct" -version = "1.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8c3c1a368f70d6cf7302d78f8f7093da241fb8e8807c05cc9e51a125895a6d5b" - [[package]] name = "bgzip" version = "0.2.2" @@ -172,15 +155,6 @@ dependencies = [ "wyz", ] -[[package]] -name = "block-buffer" -version = "0.10.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71" -dependencies = [ - "generic-array", -] - [[package]] name = "bstr" version = "1.6.2" @@ -313,21 +287,11 @@ dependencies = [ "iana-time-zone", "js-sys", "num-traits", - "time 0.1.45", + "time", "wasm-bindgen", "windows-targets", ] -[[package]] -name = "cipher" -version = "0.4.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "773f3b9af64447d2ce9850330c473515014aa235e6a783b02db81ff39e4a3dad" -dependencies = [ - "crypto-common", - "inout", -] - [[package]] name = "clang-sys" version = "1.6.1" @@ -348,12 +312,6 @@ dependencies = [ "csv", ] -[[package]] -name = "constant_time_eq" -version = "0.1.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "245097e9a4535ee1e3e3931fcfcd55a796a44c643e8596ff6566d68f09b87bbc" - [[package]] name = "core-foundation-sys" version = "0.8.4" @@ -369,15 +327,6 @@ dependencies = [ "num-traits", ] -[[package]] -name = "cpufeatures" -version = "0.2.9" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a17b76ff3a4162b0b27f354a0c87015ddad39d35f9c0c36607a3bdd175dde1f1" -dependencies = [ - "libc", -] - [[package]] name = "crc32fast" version = "1.3.2" @@ -420,16 +369,6 @@ dependencies = [ "cfg-if", ] -[[package]] -name = "crypto-common" -version = "0.1.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1bfb12502f3fc46cca1bb51ac28df9d618d813cdc3d2f25b9fe775a34af26bb3" -dependencies = [ - "generic-array", - "typenum", -] - [[package]] name = "csv" version = "1.3.0" @@ -451,29 +390,12 @@ dependencies = [ "memchr", ] -[[package]] -name = "deranged" -version = "0.3.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f2696e8a945f658fd14dc3b87242e6b80cd0f36ff04ea560fa39082368847946" - [[package]] name = "difflib" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6184e33543162437515c2e2b48714794e37845ec9851711914eec9d308f6ebe8" -[[package]] -name = "digest" -version = "0.10.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9ed9a281f7bc9b7576e61468ba615a66a5c8cfdff42420a70aa82701a3b1e292" -dependencies = [ - "block-buffer", - "crypto-common", - "subtle", -] - [[package]] name = "doc-comment" version = "0.3.3" @@ -569,16 +491,6 @@ version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c" -[[package]] -name = "generic-array" -version = "0.14.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a" -dependencies = [ - "typenum", - "version_check", -] - [[package]] name = "getrandom" version = "0.2.10" @@ -637,15 +549,6 @@ version = "0.6.9" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "12cb882ccb290b8646e554b157ab0b71e64e8d5bef775cd66b6531e52d302669" -[[package]] -name = "hmac" -version = "0.12.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6c49c37c09c17a53d937dfbb742eb3a961d65a994e6bcdcf37e7399d0cc8ab5e" -dependencies = [ - "digest", -] - [[package]] name = "humantime" version = "2.1.0" @@ -681,15 +584,6 @@ version = "2.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e186cfbae8084e513daff4240b4797e342f988cecda4fb6c939150f96315fd8" -[[package]] -name = "inout" -version = "0.1.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a0c10553d664a4d0bcff9f4215d0aac67a639cc68ef660840afe309b807bc9f5" -dependencies = [ - "generic-array", -] - [[package]] name = "inplace-vec-builder" version = "0.1.1" @@ -855,9 +749,9 @@ checksum = "5486aed0026218e61b8a01d5fbd5a0a134649abb71a0e53b7bc088529dced86e" [[package]] name = "memmap2" -version = "0.7.1" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f49388d20533534cd19360ad3d6a7dadc885944aa802ba3995040c5ec11288c6" +checksum = "deaba38d7abf1d4cca21cc89e932e542ba2b9258664d2a9ef0e61512039c9375" dependencies = [ "libc", ] @@ -918,7 +812,7 @@ dependencies = [ "flate2", "thiserror", "xz2", - "zstd 0.12.4", + "zstd", ] [[package]] @@ -973,15 +867,6 @@ dependencies = [ "autocfg", ] -[[package]] -name = "numsep" -version = "0.1.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad5c49c3e12c314efb1f43cba136031b657dcd59ee26936ab2be313c5e97da22" -dependencies = [ - "slicestring", -] - [[package]] name = "once_cell" version = "1.18.0" @@ -1036,29 +921,6 @@ dependencies = [ "windows-targets", ] -[[package]] -name = "password-hash" -version = "0.4.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7676374caaee8a325c9e7a2ae557f216c5563a171d6997b0ef8a65af35147700" -dependencies = [ - "base64ct", - "rand_core", - "subtle", -] - -[[package]] -name = "pbkdf2" -version = "0.11.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "83a0692ec44e4cf1ef28ca317f14f8f07da2d95ec3fa01f86e4467b725e60917" -dependencies = [ - "digest", - "hmac", - "password-hash", - "sha2", -] - [[package]] name = "peeking_take_while" version = "0.1.2" @@ -1532,28 +1394,6 @@ dependencies = [ "serde", ] -[[package]] -name = "sha1" -version = "0.10.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f04293dc80c3993519f2d7f6f511707ee7094fe0c6d3406feb330cdb3540eba3" -dependencies = [ - "cfg-if", - "cpufeatures", - "digest", -] - -[[package]] -name = "sha2" -version = "0.10.7" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "479fb9d862239e610720565ca91403019f2f00410f1864c5aa7479b950a76ed8" -dependencies = [ - "cfg-if", - "cpufeatures", - "digest", -] - [[package]] name = "shlex" version = "1.1.0" @@ -1572,18 +1412,6 @@ version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8542b68b8800c3cda649d2c72d688b6907b30f1580043135d61669d4aad1c175" -[[package]] -name = "size" -version = "0.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9fed904c7fb2856d868b92464fc8fa597fce366edea1a9cbfaa8cb5fe080bd6d" - -[[package]] -name = "slicestring" -version = "0.1.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "636b979c5672ac7c2a1120ca0a9a6074cd090dadfec42af6f8a5baea1223d180" - [[package]] name = "smallvec" version = "1.11.0" @@ -1599,9 +1427,9 @@ checksum = "bceb57dc07c92cdae60f5b27b3fa92ecaaa42fe36c55e22dbfb0b44893e0b1f7" [[package]] name = "sourmash" version = "0.12.0" +source = "git+https://github.com/sourmash-bio/sourmash?branch=lirber/mastiff#cfe28341af5847235bbf853424ee4917995665ee" dependencies = [ "az", - "bytecount", "byteorder", "camino", "cfg-if", @@ -1620,7 +1448,6 @@ dependencies = [ "niffler", "nohash-hasher", "num-iter", - "numsep", "once_cell", "ouroboros", "piz", @@ -1631,7 +1458,6 @@ dependencies = [ "rocksdb", "serde", "serde_json", - "size", "thiserror", "twox-hash", "typed-builder", @@ -1646,12 +1472,6 @@ version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f" -[[package]] -name = "subtle" -version = "2.5.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "81cdd64d312baedb58e21336b31bc043b77e01cc99033ce76ef539f78e965ebc" - [[package]] name = "syn" version = "1.0.109" @@ -1745,23 +1565,6 @@ dependencies = [ "winapi", ] -[[package]] -name = "time" -version = "0.3.28" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "17f6bb557fd245c28e6411aa56b6403c689ad95061f50e4be16c274e70a17e48" -dependencies = [ - "deranged", - "serde", - "time-core", -] - -[[package]] -name = "time-core" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb" - [[package]] name = "tinyvec" version = "1.6.0" @@ -1799,12 +1602,6 @@ dependencies = [ "syn 1.0.109", ] -[[package]] -name = "typenum" -version = "1.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "497961ef93d974e23eb6f433eb5fe1b7930b659f06d12dec6fc44a8f554c0bba" - [[package]] name = "unicode-ident" version = "1.0.11" @@ -1873,9 +1670,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "wasm-bindgen" -version = "0.2.87" +version = "0.2.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7706a72ab36d8cb1f80ffbf0e071533974a60d0a308d01a5d0375bf60499a342" +checksum = "7daec296f25a1bae309c0cd5c29c4b260e510e6d813c286b19eaadf409d40fce" dependencies = [ "cfg-if", "serde", @@ -1885,9 +1682,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-backend" -version = "0.2.87" +version = "0.2.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5ef2b6d3c510e9625e5fe6f509ab07d66a760f0885d858736483c32ed7809abd" +checksum = "e397f4664c0e4e428e8313a469aaa58310d302159845980fd23b0f22a847f217" dependencies = [ "bumpalo", "log", @@ -1900,9 +1697,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.87" +version = "0.2.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dee495e55982a3bd48105a7b947fd2a9b4a8ae3010041b9e0faab3f9cd028f1d" +checksum = "5961017b3b08ad5f3fe39f1e79877f8ee7c23c5e5fd5eb80de95abc41f1f16b2" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -1910,9 +1707,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.87" +version = "0.2.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "54681b18a46765f095758388f2d0cf16eb8d4169b639ab575a8f5693af210c7b" +checksum = "c5353b8dab669f5e10f5bd76df26a9360c748f054f862ff5f3f8aae0c7fb3907" dependencies = [ "proc-macro2", "quote", @@ -1923,9 +1720,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-shared" -version = "0.2.87" +version = "0.2.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca6ad05a4870b2bf5fe995117d3728437bd27d7cd5f06f13c17443ef369775a1" +checksum = "0d046c5d029ba91a1ed14da14dca44b68bf2f124cfbaf741c54151fdb3e0750b" [[package]] name = "web-sys" @@ -2067,27 +1864,9 @@ version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261" dependencies = [ - "aes", "byteorder", - "bzip2", - "constant_time_eq", "crc32fast", "crossbeam-utils", - "flate2", - "hmac", - "pbkdf2", - "sha1", - "time 0.3.28", - "zstd 0.11.2+zstd.1.5.2", -] - -[[package]] -name = "zstd" -version = "0.11.2+zstd.1.5.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "20cc960326ece64f010d2d2107537f26dc589a6573a316bd5b1dba685fa5fde4" -dependencies = [ - "zstd-safe 5.0.2+zstd.1.5.2", ] [[package]] @@ -2096,17 +1875,7 @@ version = "0.12.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1a27595e173641171fc74a1232b7b1c7a7cb6e18222c11e9dfb9888fa424c53c" dependencies = [ - "zstd-safe 6.0.6", -] - -[[package]] -name = "zstd-safe" -version = "5.0.2+zstd.1.5.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1d2a5585e04f9eea4b2a3d1eca508c4dee9592a89ef6f450c11719da0726f4db" -dependencies = [ - "libc", - "zstd-sys", + "zstd-safe", ] [[package]] diff --git a/Cargo.toml b/Cargo.toml index 45cc21c5..0ce8b0e7 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -21,7 +21,7 @@ log = "0.4.14" env_logger = "0.10.1" simple-error = "0.3.0" anyhow = "1.0.75" -zip = "0.6" +zip = { version = "0.6", default-features = false } tempfile = "3.8" needletail = "0.5.1" csv = "1.3.0"