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Over in oxli-bio/oxli, @Adamtaranto and I have been implementing k-mer functionality (no sketching!) on top of SeqToHashes in Rust, and then exposing it to Python via pyo3.
Most recently, we just added a kmers_and_hashes method that returns canonical k-mers and their hashes see oxli-bio/oxli#40. We're talking there and in oxli-bio/oxli#66 about how to pull relevant functionality back into sourmash, too.
We are not yet using protein k-mers, but we hope to get there soon: oxli-bio/oxli#38
Over in oxli-bio/oxli, @Adamtaranto and I have been implementing k-mer functionality (no sketching!) on top of
SeqToHashes
in Rust, and then exposing it to Python via pyo3.Most recently, we just added a
kmers_and_hashes
method that returns canonical k-mers and their hashes see oxli-bio/oxli#40. We're talking there and in oxli-bio/oxli#66 about how to pull relevant functionality back into sourmash, too.We are not yet using protein k-mers, but we hope to get there soon: oxli-bio/oxli#38
Some fun related issues popped up in this repo -
(hashval, sequence, strand, position)
sig kmers
#2856 as part of thisThe text was updated successfully, but these errors were encountered: