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returning more & richer information from rust SeqToHash struct/iterator #3339

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ctb opened this issue Sep 26, 2024 · 0 comments
Open

returning more & richer information from rust SeqToHash struct/iterator #3339

ctb opened this issue Sep 26, 2024 · 0 comments
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@ctb
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ctb commented Sep 26, 2024

Over in oxli-bio/oxli, @Adamtaranto and I have been implementing k-mer functionality (no sketching!) on top of SeqToHashes in Rust, and then exposing it to Python via pyo3.

Most recently, we just added a kmers_and_hashes method that returns canonical k-mers and their hashes see oxli-bio/oxli#40. We're talking there and in oxli-bio/oxli#66 about how to pull relevant functionality back into sourmash, too.

We are not yet using protein k-mers, but we hope to get there soon: oxli-bio/oxli#38

Some fun related issues popped up in this repo -

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