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reach out to other genbank and GTDB consumers to ~standardize fromfile format? #1908

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ctb opened this issue Mar 29, 2022 · 0 comments
Open

reach out to other genbank and GTDB consumers to ~standardize fromfile format? #1908

ctb opened this issue Mar 29, 2022 · 0 comments

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@ctb
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ctb commented Mar 29, 2022

re #1885 and #1671,

I'm wondering if other people who work with Genbank wide things like @shenwei356 might be interested in converging on a format here? Right now I just have:

identprefix,ident,name,genome_filename,protein_filename
GCF_000018865,GCF_000018865.1,GCF_000018865.1 s__Chloroflexus aurantiacus,ncbi-assemblies/GCF_000018865.1_ASM1886v1_genomic.fna.gz,ncbi-assemblies/GCF_000018865.1_ASM1886v1_protein.faa.gz

which is hopefully pretty self-explanatory :)
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