fix: clean up target path upon storage in order to avoid merges of directories #25
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Sequence Diagram(s)sequenceDiagram
participant Client
participant StoragePlugin
participant FileSystem
Client->>StoragePlugin: store_object(data)
StoragePlugin->>FileSystem: Check target path
alt Target is a directory
StoragePlugin->>FileSystem: Remove contents (shutil.rmtree)
else Target is a file
StoragePlugin->>FileSystem: Remove file (unlink)
end
StoragePlugin->>FileSystem: Store new object
FileSystem-->>StoragePlugin: Confirm storage
StoragePlugin-->>Client: Success
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- snakemake_storage_plugin_fs/init.py (1 hunks)
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snakemake_storage_plugin_fs/__init__.py (1)
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**/*.py: Do not suggest to add trailing commas.
Do not suggest type annotations for functions that are defined inside of functions or methods.
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snakemake_storage_plugin_fs/__init__.py (1)
211-215: LGTM! Verify cleanup logic.The cleanup logic in
store_objectis well-implemented, ensuring no residual data conflicts by correctly handling both directories and files.However, verify that the cleanup logic aligns with the intended behavior across the codebase, especially considering any potential side effects of removing existing data.
Verification successful
Cleanup logic appears isolated to
store_objectmethod.The
store_objectmethod's cleanup logic does not seem to have external dependencies or references elsewhere in the codebase, suggesting it is self-contained.Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Verify the cleanup logic in `store_object`. # Test: Search for references to `store_object` to ensure cleanup logic is consistent with usage expectations. rg --type python -A 5 $'store_object'Length of output: 67
Script:
#!/bin/bash # Description: Verify the cleanup logic in `store_object`. # Test: Search for references to `store_object` in Python files to ensure cleanup logic is consistent with usage expectations. rg 'store_object' --glob '*.py' -A 5Length of output: 545
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Files selected for processing (1)
- snakemake_storage_plugin_fs/init.py (1 hunks)
Additional context used
Path-based instructions (1)
snakemake_storage_plugin_fs/__init__.py (1)
Pattern
**/*.py: Do not suggest to add trailing commas.
Do not suggest type annotations for functions that are defined inside of functions or methods.
Do not suggest type annotation of theselfargument of methods.
Do not suggest type annotation of theclsargument of classmethods.
Additional comments not posted (1)
snakemake_storage_plugin_fs/__init__.py (1)
211-216: LGTM! Verify error handling and race conditions.The cleanup logic in the
store_objectmethod is well-implemented. Usingshutil.rmtreefor directories andunlinkwithmissing_ok=Truefor files is appropriate.However, ensure that the method handles potential race conditions and errors, especially in concurrent environments.
🤖 I have created a release *beep* *boop* --- ## [1.0.6](v1.0.5...v1.0.6) (2024-08-16) ### Bug Fixes * clean up target path upon storage in order to avoid merges of directories ([#25](#25)) ([5a9bd27](5a9bd27)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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