fix: adapt to changes in snakemake-interface-executor-plugins

snakemake · Sep 20, 2023 · e8ef5e7 · e8ef5e7
1 parent 0b283c4
commit e8ef5e7
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -11,16 +11,16 @@ readme = "README.md"
 
 [tool.poetry.dependencies]
 python = "^3.9"
-snakemake-interface-common = "^1.3.2"
-snakemake-interface-executor-plugins = "^3.0.0"
+snakemake-interface-common = "^1.4.1"
+snakemake-interface-executor-plugins = "^4.0.0"
 
 
 [tool.poetry.group.dev.dependencies]
 black = "^23.7.0"
 flake8 = "^6.1.0"
 coverage = "^7.3.1"
 pytest = "^7.4.2"
-snakemake = {git = "https://github.com/snakemake/snakemake.git", branch = "feat/api-rewrite"}
+snakemake = {git = "https://github.com/snakemake/snakemake.git"}
 
 [build-system]
 requires = ["poetry-core"]

diff --git a/snakemake_executor_plugin_slurm_jobstep/__init__.py b/snakemake_executor_plugin_slurm_jobstep/__init__.py
@@ -12,7 +12,7 @@
 from snakemake_interface_executor_plugins.workflow import WorkflowExecutorInterface
 from snakemake_interface_executor_plugins.logging import LoggerExecutorInterface
 from snakemake_interface_executor_plugins.jobs import (
-    ExecutorJobInterface,
+    JobExecutorInterface,
 )
 from snakemake_interface_executor_plugins.settings import ExecMode
 
@@ -56,7 +56,7 @@ def __init__(
         # only needed for commented out jobstep handling below
         self.jobid = os.getenv("SLURM_JOB_ID")
 
-    def run_job(self, job: ExecutorJobInterface):
+    def run_job(self, job: JobExecutorInterface):
         # Implement here how to run a job.
         # You can access the job's resources, etc.
         # via the job object.