From a3379bb76933703f77fae13d2a850eef053bc396 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Johannes=20K=C3=B6ster?= Date: Mon, 11 Mar 2024 21:42:08 +0100 Subject: [PATCH] fix: avoid redundant steps related to shared fs usage (#19) --- pyproject.toml | 2 +- snakemake_executor_plugin_slurm_jobstep/__init__.py | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 1a5163a..feea629 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,7 +16,7 @@ keywords = ["snakemake", "plugin", "executor", "cluster", "slurm"] [tool.poetry.dependencies] python = "^3.11" snakemake-interface-common = "^1.13.0" -snakemake-interface-executor-plugins = "^8.2.0" +snakemake-interface-executor-plugins = "^9.0.0" [tool.poetry.group.dev.dependencies] black = ">=23.7,<25.0" diff --git a/snakemake_executor_plugin_slurm_jobstep/__init__.py b/snakemake_executor_plugin_slurm_jobstep/__init__.py index 0362801..19a82d5 100644 --- a/snakemake_executor_plugin_slurm_jobstep/__init__.py +++ b/snakemake_executor_plugin_slurm_jobstep/__init__.py @@ -32,6 +32,7 @@ pass_default_resources_args=True, pass_envvar_declarations_to_cmd=False, auto_deploy_default_storage_provider=False, + spawned_jobs_assume_shared_fs=True, )