diff --git a/CHANGELOG.md b/CHANGELOG.md index 1c629481..d3fd87d3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,10 @@ # Release Notes +## v0.10.1 Bugfixes (24/03/2022) + +### Fixed + +- Fix with creating tensors on correct devices (#908) +- Fix with MultiLoss when calculating gradient (#908) ## v0.10.0 Adding N-HiTS network (N-BEATS successor) (23/03/2022) diff --git a/docs/requirements.txt b/docs/requirements.txt index c52e71e2..22920760 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -15,3 +15,5 @@ statsmodels ipython nbconvert>=6.3.0 recommonmark>=0.7.1 +# Jinja2 3.1.0 breaks docs. Keep until nbconvert or Jinja2 fixes it. +jinja2<3.1.0 diff --git a/poetry.lock b/poetry.lock index 61dddf7e..ada7c24c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -52,7 +52,7 @@ python-versions = "*" [[package]] name = "alembic" -version = "1.7.5" +version = "1.7.7" description = "A database migration tool for SQLAlchemy." category = "main" optional = false @@ -77,11 +77,11 @@ python-versions = "*" [[package]] name = "astroid" -version = "2.9.0" +version = "2.9.3" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false -python-versions = "~=3.6" +python-versions = ">=3.6.2" [package.dependencies] lazy-object-proxy = ">=1.4.0" @@ -91,14 +91,14 @@ wrapt = ">=1.11,<1.14" [[package]] name = "async-timeout" -version = "4.0.1" +version = "4.0.2" description = "Timeout context manager for asyncio programs" category = "main" optional = false python-versions = ">=3.6" [package.dependencies] -typing-extensions = ">=3.6.5" +typing-extensions = {version = ">=3.6.5", markers = "python_version < \"3.8\""} [[package]] name = "asynctest" @@ -118,21 +118,21 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "attrs" -version = "21.2.0" +version = "21.4.0" description = "Classes Without Boilerplate" category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "autopage" -version = "0.4.0" +version = "0.5.0" description = "A library to provide automatic paging for console output" category = "main" optional = false @@ -157,21 +157,6 @@ category = "dev" optional = false python-versions = "*" -[[package]] -name = "backports.entry-points-selectable" -version = "1.1.1" -description = "Compatibility shim providing selectable entry points for older implementations" -category = "dev" -optional = false -python-versions = ">=2.7" - -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] - [[package]] name = "beautifulsoup4" version = "4.10.0" @@ -227,11 +212,11 @@ webencodings = "*" [[package]] name = "cachetools" -version = "4.2.4" +version = "5.0.0" description = "Extensible memoizing collections and decorators" category = "main" optional = false -python-versions = "~=3.5" +python-versions = "~=3.7" [[package]] name = "certifi" @@ -262,7 +247,7 @@ python-versions = ">=3.6.1" [[package]] name = "charset-normalizer" -version = "2.0.9" +version = "2.0.12" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false @@ -273,7 +258,7 @@ unicode_backport = ["unicodedata2"] [[package]] name = "click" -version = "8.0.3" +version = "8.0.4" description = "Composable command line interface toolkit" category = "dev" optional = false @@ -285,7 +270,7 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "cliff" -version = "3.10.0" +version = "3.10.1" description = "Command Line Interface Formulation Framework" category = "main" optional = false @@ -313,7 +298,7 @@ numpy = "*" [[package]] name = "cmd2" -version = "2.3.3" +version = "2.4.0" description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" category = "main" optional = false @@ -323,8 +308,7 @@ python-versions = ">=3.6" attrs = ">=16.3.0" importlib-metadata = {version = ">=1.6.0", markers = "python_version < \"3.8\""} pyperclip = ">=1.6" -pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""} -pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""} +pyreadline3 = {version = "*", markers = "sys_platform == \"win32\""} typing-extensions = {version = "*", markers = "python_version < \"3.8\""} wcwidth = ">=0.1.7" @@ -398,7 +382,7 @@ python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [[package]] name = "decorator" -version = "5.1.0" +version = "5.1.1" description = "Decorators for Humans" category = "dev" optional = false @@ -430,11 +414,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "entrypoints" -version = "0.3" +version = "0.4" description = "Discover and load entry points from installed packages." category = "dev" optional = false -python-versions = ">=2.7" +python-versions = ">=3.6" [[package]] name = "execnet" @@ -449,11 +433,11 @@ testing = ["pre-commit"] [[package]] name = "filelock" -version = "3.4.0" +version = "3.6.0" description = "A platform independent file lock." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"] @@ -461,28 +445,28 @@ testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-co [[package]] name = "flake8" -version = "4.0.1" +version = "3.9.2" description = "the modular source code checker: pep8 pyflakes and co" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [package.dependencies] -importlib-metadata = {version = "<4.3", markers = "python_version < \"3.8\""} +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.8.0,<2.9.0" -pyflakes = ">=2.4.0,<2.5.0" +pycodestyle = ">=2.7.0,<2.8.0" +pyflakes = ">=2.3.0,<2.4.0" [[package]] name = "fonttools" -version = "4.28.3" +version = "4.31.2" description = "Tools to manipulate font files" category = "main" optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=13.0.0)", "xattr"] +all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] graphite = ["lz4 (>=1.7.4.2)"] interpolatable = ["scipy", "munkres"] lxml = ["lxml (>=4.0,<5)"] @@ -491,16 +475,16 @@ plot = ["matplotlib"] symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] -unicode = ["unicodedata2 (>=13.0.0)"] +unicode = ["unicodedata2 (>=14.0.0)"] woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] [[package]] name = "frozenlist" -version = "1.2.0" +version = "1.3.0" description = "A list-like structure which implements collections.abc.MutableSequence" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "fsspec" @@ -546,14 +530,14 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "google-auth" -version = "2.3.3" +version = "2.6.2" description = "Google Authentication Library" category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" [package.dependencies] -cachetools = ">=2.0.0,<5.0" +cachetools = ">=2.0.0,<6.0" pyasn1-modules = ">=0.2.1" rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} six = ">=1.9.0" @@ -591,7 +575,7 @@ docs = ["sphinx"] [[package]] name = "grpcio" -version = "1.42.0" +version = "1.45.0" description = "HTTP/2-based RPC framework" category = "main" optional = false @@ -601,15 +585,15 @@ python-versions = ">=3.6" six = ">=1.5.2" [package.extras] -protobuf = ["grpcio-tools (>=1.42.0)"] +protobuf = ["grpcio-tools (>=1.45.0)"] [[package]] name = "identify" -version = "2.4.0" +version = "2.4.12" description = "File identification library for Python" category = "dev" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7" [package.extras] license = ["ukkonen"] @@ -632,19 +616,20 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "importlib-metadata" -version = "4.2.0" +version = "4.11.3" description = "Read metadata from Python packages" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +perf = ["ipython"] +testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] [[package]] name = "importlib-resources" @@ -701,7 +686,7 @@ test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] [[package]] name = "ipython" -version = "7.31.1" +version = "7.32.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -731,14 +716,6 @@ parallel = ["ipyparallel"] qtconsole = ["qtconsole"] test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] -[[package]] -name = "ipython-genutils" -version = "0.2.0" -description = "Vestigial utilities from IPython" -category = "dev" -optional = false -python-versions = "*" - [[package]] name = "isort" version = "5.10.1" @@ -770,11 +747,11 @@ testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] name = "jinja2" -version = "3.0.3" +version = "3.1.0" description = "A very fast and expressive template engine." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] MarkupSafe = ">=2.0" @@ -792,7 +769,7 @@ python-versions = ">=3.6" [[package]] name = "jsonschema" -version = "4.2.1" +version = "4.4.0" description = "An implementation of JSON Schema validation for Python" category = "dev" optional = false @@ -803,6 +780,7 @@ attrs = ">=17.4.0" importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] @@ -810,7 +788,7 @@ format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- [[package]] name = "jupyter-client" -version = "7.1.0" +version = "7.1.2" description = "Jupyter protocol implementation and client libraries" category = "dev" optional = false @@ -831,7 +809,7 @@ test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-comm [[package]] name = "jupyter-core" -version = "4.9.1" +version = "4.9.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" optional = false @@ -854,53 +832,61 @@ pygments = ">=2.4.1,<3" [[package]] name = "kiwisolver" -version = "1.3.2" +version = "1.4.0" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false python-versions = ">=3.7" +[package.dependencies] +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} + [[package]] name = "lazy-object-proxy" -version = "1.7.0" +version = "1.7.1" description = "A fast and thorough lazy object proxy." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">=3.6" [[package]] name = "mako" -version = "1.1.6" -description = "A super-fast templating language that borrows the best ideas from the existing templating languages." +version = "1.2.0" +description = "A super-fast templating language that borrows the best ideas from the existing templating languages." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.7" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} MarkupSafe = ">=0.9.2" [package.extras] babel = ["babel"] lingua = ["lingua"] +testing = ["pytest"] [[package]] name = "markdown" -version = "3.3.5" +version = "3.3.6" description = "Python implementation of Markdown." category = "main" optional = false python-versions = ">=3.6" +[package.dependencies] +importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} + [package.extras] testing = ["coverage", "pyyaml"] [[package]] name = "markupsafe" -version = "2.0.1" +version = "2.1.1" description = "Safely add untrusted strings to HTML/XML markup." category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "matplotlib" @@ -950,15 +936,15 @@ python-versions = "*" [[package]] name = "multidict" -version = "5.2.0" +version = "6.0.2" description = "multidict implementation" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "mypy" -version = "0.941" +version = "0.942" description = "Optional static typing for Python" category = "dev" optional = false @@ -985,32 +971,32 @@ python-versions = "*" [[package]] name = "nbclient" -version = "0.5.9" +version = "0.5.13" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7.0" [package.dependencies] jupyter-client = ">=6.1.5" nbformat = ">=5.0" nest-asyncio = "*" -traitlets = ">=4.2" +traitlets = ">=5.0.0" [package.extras] -dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] -test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +test = ["ipython (<8.0.0)", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] [[package]] name = "nbconvert" -version = "6.3.0" +version = "6.4.4" description = "Converting Jupyter Notebooks" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] +beautifulsoup4 = "*" bleach = "*" defusedxml = "*" entrypoints = ">=0.2.2" @@ -1026,29 +1012,28 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"] -webpdf = ["pyppeteer (==0.2.6)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (>=1,<1.1)"] +webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.1.3" +version = "5.2.0" description = "The Jupyter Notebook format" category = "dev" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" [package.dependencies] -ipython-genutils = "*" jsonschema = ">=2.4,<2.5.0 || >2.5.0" jupyter-core = "*" traitlets = ">=4.1" [package.extras] fast = ["fastjsonschema"] -test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] +test = ["check-manifest", "fastjsonschema", "testpath", "pytest"] [[package]] name = "nbsphinx" @@ -1092,16 +1077,16 @@ python-versions = ">=3.7" [[package]] name = "oauthlib" -version = "3.1.1" +version = "3.2.0" description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" category = "main" optional = false python-versions = ">=3.6" [package.extras] -rsa = ["cryptography (>=3.0.0,<4)"] +rsa = ["cryptography (>=3.0.0)"] signals = ["blinker (>=1.4.0)"] -signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] +signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"] [[package]] name = "optuna" @@ -1224,7 +1209,7 @@ test = ["pytest", "pytest-cov", "scipy"] [[package]] name = "pbr" -version = "5.8.0" +version = "5.8.1" description = "Python Build Reasonableness" category = "main" optional = false @@ -1259,11 +1244,11 @@ python-versions = ">=3.7" [[package]] name = "platformdirs" -version = "2.4.0" +version = "2.5.1" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] @@ -1286,14 +1271,14 @@ testing = ["pytest", "pytest-benchmark"] [[package]] name = "plumbum" -version = "1.7.1" +version = "1.7.2" description = "Plumbum: shell combinators library" category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [package.dependencies] -pypiwin32 = {version = "*", markers = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""} +pywin32 = {version = "*", markers = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""} [package.extras] dev = ["paramiko", "psutil", "pytest", "pytest-cov", "pytest-mock", "pytest-timeout"] @@ -1327,11 +1312,11 @@ virtualenv = ">=20.0.8" [[package]] name = "prettytable" -version = "2.4.0" +version = "3.2.0" description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} @@ -1342,7 +1327,7 @@ tests = ["pytest", "pytest-cov", "pytest-lazy-fixture"] [[package]] name = "prompt-toolkit" -version = "3.0.24" +version = "3.0.28" description = "Library for building powerful interactive command lines in Python" category = "dev" optional = false @@ -1353,7 +1338,7 @@ wcwidth = "*" [[package]] name = "protobuf" -version = "3.19.1" +version = "3.19.4" description = "Protocol Buffers" category = "main" optional = false @@ -1418,11 +1403,11 @@ pyasn1 = ">=0.4.6,<0.5.0" [[package]] name = "pycodestyle" -version = "2.8.0" +version = "2.7.0" description = "Python style guide checker" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pycparser" @@ -1461,7 +1446,7 @@ python-versions = ">=3.6" [[package]] name = "pyflakes" -version = "2.4.0" +version = "2.3.1" description = "passive checker of Python programs" category = "dev" optional = false @@ -1469,7 +1454,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pygments" -version = "2.10.0" +version = "2.11.2" description = "Pygments is a syntax highlighting package written in Python." category = "dev" optional = false @@ -1494,7 +1479,7 @@ typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\"" [[package]] name = "pyparsing" -version = "3.0.6" +version = "3.0.7" description = "Python parsing module" category = "main" optional = false @@ -1511,28 +1496,9 @@ category = "main" optional = false python-versions = "*" -[[package]] -name = "pypiwin32" -version = "223" -description = "" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -pywin32 = ">=223" - -[[package]] -name = "pyreadline" -version = "2.1" -description = "A python implmementation of GNU readline." -category = "main" -optional = false -python-versions = "*" - [[package]] name = "pyreadline3" -version = "3.3" +version = "3.4.1" description = "A python implementation of GNU readline." category = "main" optional = false @@ -1540,11 +1506,11 @@ python-versions = "*" [[package]] name = "pyrsistent" -version = "0.18.0" +version = "0.18.1" description = "Persistent/Functional/Immutable data structures" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "pytest" @@ -1681,7 +1647,7 @@ test = ["coverage (>5.2.0,<6.3)", "codecov (>=2.1)", "pytest (>=6.0)", "pytest-r [[package]] name = "pytz" -version = "2021.3" +version = "2022.1" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -1689,7 +1655,7 @@ python-versions = "*" [[package]] name = "pywin32" -version = "302" +version = "303" description = "Python for Window Extensions" category = "dev" optional = false @@ -1730,7 +1696,7 @@ sphinx = ">=1.3.1" [[package]] name = "requests" -version = "2.26.0" +version = "2.27.1" description = "Python HTTP for Humans." category = "main" optional = false @@ -1748,7 +1714,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "requests-oauthlib" -version = "1.3.0" +version = "1.3.1" description = "OAuthlib authentication support for Requests." category = "main" optional = false @@ -1805,7 +1771,7 @@ numpy = ">=1.16.5" [[package]] name = "setuptools-scm" -version = "6.3.2" +version = "6.4.2" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false @@ -1816,7 +1782,8 @@ packaging = ">=20.0" tomli = ">=1.0.0" [package.extras] -toml = ["setuptools (>=42)", "tomli (>=1.0.0)"] +test = ["pytest (>=6.2)", "virtualenv (>20)"] +toml = ["setuptools (>=42)"] [[package]] name = "six" @@ -1844,7 +1811,7 @@ python-versions = ">=3.6" [[package]] name = "sphinx" -version = "4.3.2" +version = "4.4.0" description = "Python documentation generator" category = "dev" optional = false @@ -1856,6 +1823,7 @@ babel = ">=1.3" colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} docutils = ">=0.14,<0.18" imagesize = "*" +importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} Jinja2 = ">=2.3" packaging = "*" Pygments = ">=2.0" @@ -1870,7 +1838,7 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.920)", "docutils-stubs", "types-typed-ast", "types-pkg-resources", "types-requests"] +lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"] test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] [[package]] @@ -1946,7 +1914,7 @@ test = ["pytest"] [[package]] name = "sqlalchemy" -version = "1.4.28" +version = "1.4.32" description = "Database Abstraction Library" category = "main" optional = false @@ -2011,7 +1979,7 @@ pbr = ">=2.0.0,<2.1.0 || >2.1.0" [[package]] name = "tensorboard" -version = "2.7.0" +version = "2.8.0" description = "TensorBoard lets you watch Tensors Flow" category = "main" optional = false @@ -2040,7 +2008,7 @@ python-versions = ">=3.6" [[package]] name = "tensorboard-plugin-wit" -version = "1.8.0" +version = "1.8.1" description = "What-If Tool TensorBoard plugin." category = "main" optional = false @@ -2056,18 +2024,18 @@ python-versions = "*" [[package]] name = "testpath" -version = "0.5.0" +version = "0.6.0" description = "Test utilities for code working with files and commands" category = "dev" optional = false python-versions = ">= 3.5" [package.extras] -test = ["pytest", "pathlib2"] +test = ["pytest"] [[package]] name = "threadpoolctl" -version = "3.0.0" +version = "3.1.0" description = "threadpoolctl" category = "main" optional = false @@ -2091,11 +2059,11 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "tomli" -version = "1.2.3" +version = "2.0.1" description = "A lil' TOML parser" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "torch" @@ -2110,7 +2078,7 @@ typing-extensions = "*" [[package]] name = "torchmetrics" -version = "0.6.1" +version = "0.7.3" description = "PyTorch native Metrics" category = "main" optional = false @@ -2119,17 +2087,18 @@ python-versions = ">=3.6" [package.dependencies] numpy = ">=1.17.2" packaging = "*" +pyDeprecate = ">=0.3.0,<0.4.0" torch = ">=1.3.1" [package.extras] -all = ["pystoi", "pesq (>=0.0.3)", "pycocotools (>=2.0.2)", "torchvision", "sphinxcontrib-mockautodoc", "sphinx-copybutton (>=0.3)", "sphinx (>=4.0)", "pandoc (>=1.0)", "pytorch-lightning (>=1.1)", "sphinx-autodoc-typehints (>=1.0)", "myst-parser", "sphinx-togglebutton (>=0.2)", "docutils (>=0.16)", "nbsphinx (>=0.8)", "sphinxcontrib-fulltoc (>=1.0)", "sphinx-paramlinks (>=0.5.1)", "scipy", "torch-fidelity", "lpips", "pytorch-lightning 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not torch.is_tensor(self.scale_) and np.isscalar(self.scale_): + if isinstance(self.scale_, np.ndarray) and np.isscalar(self.scale_): self.scale_ = self.scale_.astype(y_scale.dtype) elif self.method == "robust": diff --git a/pytorch_forecasting/metrics.py b/pytorch_forecasting/metrics.py index f24bfef0..ec655cb8 100644 --- a/pytorch_forecasting/metrics.py +++ b/pytorch_forecasting/metrics.py @@ -1,7 +1,7 @@ """ Implementation of metrics for (mulit-horizon) timeseries forecasting. """ -from typing import Dict, List, Tuple, Union +from typing import Any, Callable, Dict, List, Optional, Tuple, Union import warnings import scipy.stats @@ -11,7 +11,6 @@ import torch.nn.functional as F from torch.nn.utils import rnn from torchmetrics import Metric as LightningMetric -from torchmetrics.metric import CompositionalMetric from pytorch_forecasting.utils import create_mask, unpack_sequence, unsqueeze_like @@ -152,6 +151,9 @@ def _sync_dist(self, dist_sync_fn=None, process_group=None) -> None: # No syncing required here. syncing will be done in metric_a and metric_b pass + def _wrap_compute(self, compute: Callable) -> Callable: + return compute + def reset(self) -> None: self.torchmetric.reset() @@ -264,7 +266,7 @@ def __len__(self) -> int: """ return len(self.metrics) - def update(self, y_pred: torch.Tensor, y_actual: torch.Tensor, **kwargs): + def update(self, y_pred: torch.Tensor, y_actual: torch.Tensor, **kwargs) -> None: """ Update composite metric @@ -272,9 +274,6 @@ def update(self, y_pred: torch.Tensor, y_actual: torch.Tensor, **kwargs): y_pred: network output y_actual: actual values **kwargs: arguments to update function - - Returns: - torch.Tensor: metric value on which backpropagation can be applied """ for idx, metric in enumerate(self.metrics): try: @@ -306,6 +305,55 @@ def compute(self) -> torch.Tensor: results = torch.stack(results, dim=0).sum(0) return results + @torch.jit.unused + def forward(self, y_pred: torch.Tensor, y_actual: torch.Tensor, **kwargs): + """ + Calculate composite metric + + Args: + y_pred: network output + y_actual: actual values + **kwargs: arguments to update function + + Returns: + torch.Tensor: metric value on which backpropagation can be applied + """ + results = [] + for idx, metric in enumerate(self.metrics): + try: + res = metric( + y_pred[idx], + (y_actual[0][idx], y_actual[1]), + **{ + name: value[idx] if isinstance(value, (list, tuple)) else value + for name, value in kwargs.items() + }, + ) + except TypeError: # silently update without kwargs if not supported + res = metric(y_pred[idx], (y_actual[0][idx], y_actual[1])) + results.append(res * self.weights[idx]) + + if len(results) == 1: + results = results[0] + else: + results = torch.stack(results, dim=0).sum(0) + return results + + def _wrap_compute(self, compute: Callable) -> Callable: + return compute + + def _sync_dist(self, dist_sync_fn: Optional[Callable] = None, process_group: Optional[Any] = None) -> None: + # No syncing required here. syncing will be done in metrics + pass + + def reset(self) -> None: + for metric in self.metrics: + metric.reset() + + def persistent(self, mode: bool = False) -> None: + for metric in self.metrics: + metric.persistent(mode=mode) + def to_prediction(self, y_pred: torch.Tensor, **kwargs) -> torch.Tensor: """ Convert network prediction into a point prediction. @@ -746,7 +794,7 @@ def to_quantiles(self, out: Dict[str, torch.Tensor], quantiles=None): quantiles = self.quantiles predictions = super().to_prediction(out) return torch.stack( - [torch.tensor(scipy.stats.poisson(predictions.detach().numpy()).ppf(q)) for q in quantiles], dim=-1 + [torch.tensor(scipy.stats.poisson(predictions.detach().cpu().numpy()).ppf(q)) for q in quantiles], dim=-1 ).to(predictions.device) diff --git a/pytorch_forecasting/models/base_model.py b/pytorch_forecasting/models/base_model.py index f66a05e9..b53389b2 100644 --- a/pytorch_forecasting/models/base_model.py +++ b/pytorch_forecasting/models/base_model.py @@ -866,7 +866,7 @@ def log_gradient_flow(self, named_parameters: Dict[str, torch.Tensor]) -> None: for name, p in named_parameters: if p.grad is not None and p.requires_grad and "bias" not in name: layers.append(name) - ave_grads.append(p.grad.abs().mean()) + ave_grads.append(p.grad.abs().cpu().mean()) self.logger.experiment.add_histogram(tag=name, values=p.grad, global_step=self.global_step) fig, ax = plt.subplots() ax.plot(ave_grads) diff --git a/pytorch_forecasting/models/temporal_fusion_transformer/__init__.py b/pytorch_forecasting/models/temporal_fusion_transformer/__init__.py index 9012d8b9..394c2a61 100644 --- a/pytorch_forecasting/models/temporal_fusion_transformer/__init__.py +++ b/pytorch_forecasting/models/temporal_fusion_transformer/__init__.py @@ -596,7 +596,9 @@ def interpret_output( encoder_attention = out["encoder_attention"] shifts = encoder_attention.size(3) - out["encoder_lengths"] new_index = ( - torch.arange(encoder_attention.size(3))[None, None, None].expand_as(encoder_attention) + torch.arange(encoder_attention.size(3), device=encoder_attention.device)[None, None, None].expand_as( + encoder_attention + ) - shifts[:, None, None, None] ) % encoder_attention.size(3) encoder_attention = torch.gather(encoder_attention, dim=3, index=new_index)