_quarto.yml

project:
  type: website
  output-dir: docs

toc: true
toc-depth: 3

format:
  html:
    theme: cerulean
    css: styles.css
    html-math-method: katex
    code-fold: false
    code-link: true
    code-copy: true
    code-block-bg: true
    code-block-border-left: "#31BAE9"
    anchor-sections: true
    link-external-newwindow: true
    df-print: paged

execute:
  cache: true
  freeze: true

website:
  title: "mizer course"
  site-url: "https://mizer.course.nov22.sizespectrum.org"
  favicon: images/favicon-16x16.png
  repo-url: https://github.com/sizespectrum/mizerCourse_Nov22
  repo-actions: [edit, issue]
  twitter-card:
    site: "@mizer_model"
    creator: "gustavdelius"
  open-graph: true
  comments:
    giscus:
      repo: sizespectrum/mizerCourse_Nov22
      category: Comments
      reactions-enabled: false
      input-position: bottom
      repo-id: R_kgDOISYpnA
      category-id: DIC_kwDOISYpnM4CSJOj
      loading: lazy
      mapping: title
  search: 
    location: navbar
    type: textbox
  page-navigation: true
  sidebar:
    style: "docked"
    search: true
    contents:
      - section: "Prepare"
        href: prepare/index.qmd
        contents:
          - text: Introduce yourself
            href: prepare/introduce-yourself.qmd
          - text: Install tools
            href: prepare/install-tools.qmd
          - text: Use Git and GitHub
            href: prepare/use-git-and-github.qmd
      - section: "Week 1: Understand"
        href: understand/index.qmd
        contents:
        - text: Observed size spectra
          href: understand/observed-size-spectra.qmd
        - text: Single species spectra
          href: understand/single-species-spectra.qmd
        - text: Predation, growth and mortality
          href: understand/predation-growth-and-mortality.qmd
        - text: Species interactions
          href: understand/species-interactions.qmd
        - text: Dynamics of size spectra
          href: understand/dynamics-of-spectra.qmd
      - section: "Week 2: Build"
        href: build/index.qmd
        contents:
          - text: Find species parameters
            href: build/find-species-parameters.qmd
          - text: Create your first model
            href: build/create-first-model.qmd
          - text: Tune to diet data
            href: build/refine-diet.qmd
          - text: Tune to landings data
            href: build/refine-landings.qmd
      - section: "Week 3: Use"
        href: use/index.qmd
        contents:
          - text: Tune resilience
            href: use/tune-resilience.qmd
          - text: Explore fishing scenarios
            href: use/fishing-scenarios.qmd
          - text: Change resources
            href: use/change-resources.qmd
          - text: Explore further scenarios
            href: use/further-scenarios.qmd
      - text: Troubleshooting
        href: troubleshooting.qmd