diff --git a/counts.json b/counts.json index db6e4a6..27a1814 100644 --- a/counts.json +++ b/counts.json @@ -2326,16 +2326,16 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3582, - "2to3-3.10": 785, - "2to3-3.11": 259, + "2to3": 3585, + "2to3-3.10": 786, + "2to3-3.11": 260, "2to3-3.12": 157, "2to3-3.4": 6, "2to3-3.5": 103, "2to3-3.6": 341, "2to3-3.7": 382, "2to3-3.8": 572, - "2to3-3.9": 647, + "2to3-3.9": 648, "3EdgeTests": 1, "3_1_filter_mapQ_for_sam.pl": 1, "3seq": 1, @@ -4895,7 +4895,7 @@ "acdvalid": 23, "ace.pl": 56, "ace2contig": 2, - "ace2sam": 498, + "ace2sam": 499, "aci": 1, "aclocal.bak": 11, "acountry": 4272, @@ -4984,7 +4984,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4459, + "adig": 4460, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5100,7 +5100,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4459, + "ahost": 4460, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -5369,7 +5369,7 @@ "annembed": 1, "annonars": 1, "annosine2": 1, - "annot-tsv": 15, + "annot-tsv": 16, "annot_blast_btop2.pl": 7, "annotate": 244, "annotate-partitions.py": 7, @@ -5889,7 +5889,7 @@ "autometa-taxonomy-majority-vote": 2, "autometa-unclustered-recruitment": 2, "autometa-update-databases": 2, - "autopoint": 5252, + "autopoint": 5253, "autoreconf.bak": 10, "autoscan.bak": 10, "autoupdate.bak": 10, @@ -6492,7 +6492,7 @@ "bgenFileInfo": 1, "bgenix": 1, "bgreat": 4, - "bgzip": 687, + "bgzip": 688, "bgzip.pl": 4, "bgziptabix": 31, "bialign.py": 1, @@ -6675,7 +6675,7 @@ "blast2lca": 1, "blast2rma": 1, "blast2sam": 1, - "blast2sam.pl": 498, + "blast2sam.pl": 499, "blastMapAnalyzer2.pl": 1, "blastMining": 1, "blastMining_lca.sh": 1, @@ -6797,7 +6797,7 @@ "bowtie2-inspect-l": 108, "bowtie2-inspect-s": 108, "bowtie2_stuff.py": 1, - "bowtie2sam.pl": 498, + "bowtie2sam.pl": 499, "bowtie_PE_separate_then_join.pl": 1, "bowtie_mapper.sh": 1, "box": 1, @@ -6961,7 +6961,7 @@ "broad_utils.py": 1, "brockman_pipeline": 1, "brooklyn_plot": 1, - "brotli": 396, + "brotli": 397, "browse": 18, "bs_call": 2, "bs_seeker2-align.py": 1, @@ -7058,7 +7058,7 @@ "bundlelinks": 1, "bundler": 17, "bunwarpj": 4, - "bunzip2": 6526, + "bunzip2": 6529, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7109,16 +7109,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6526, - "bzcmp": 6526, - "bzdiff": 6526, - "bzegrep": 6526, - "bzfgrep": 6526, - "bzgrep": 6526, - "bzip2": 6526, - "bzip2recover": 6526, - "bzless": 6526, - "bzmore": 6526, + "bzcat": 6529, + "bzcmp": 6529, + "bzdiff": 6529, + "bzegrep": 6529, + "bzfgrep": 6529, + "bzgrep": 6529, + "bzip2": 6529, + "bzip2recover": 6529, + "bzless": 6529, + "bzmore": 6529, "c++": 4, "c++filt": 7, "c-index-test": 8, @@ -7135,7 +7135,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 7676, + "c_rehash": 7679, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7308,7 +7308,7 @@ "capnpc-c++": 51, "capnpc-capnp": 51, "capnpc-cython": 1, - "captoinfo": 7607, + "captoinfo": 7610, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -7394,7 +7394,7 @@ "cbSeurat": 1, "cbTool": 1, "cbUpgrade": 1, - "cbc": 96, + "cbc": 97, "cbi": 1, "cblaster": 1, "cbrunsli": 20, @@ -7743,7 +7743,7 @@ "cit2pmid": 1, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5714, + "cjpeg": 5715, "ckeygen": 1, "cksum": 82, "claMLST": 1, @@ -7849,7 +7849,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7607, + "clear": 7610, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -7898,7 +7898,7 @@ "closest_residues": 1, "cloudgene.yaml": 1, "clove": 1, - "clp": 97, + "clp": 98, "clsify": 1, "clstr2tree.pl": 43, "clstr2txt.pl": 43, @@ -8201,7 +8201,7 @@ "compileSpliceCands": 12, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5740, + "compile_et": 5741, "compiled_table.py": 1, "compleasm": 1, "complementBed": 266, @@ -8499,7 +8499,7 @@ "core_diversity_analyses.py": 1, "core_methods.py": 1, "core_overlap_plot.py": 1, - "corelist": 1660, + "corelist": 1661, "corepack": 11, "coreprocess.pl": 3, "coresnpfilter": 1, @@ -8600,7 +8600,7 @@ "cp2k_run": 1, "cp2k_shell.ssmp": 1, "cpack": 11, - "cpan": 1660, + "cpan": 1661, "cpancover": 6, "cpanm": 242, "cpat.py": 1, @@ -8839,7 +8839,7 @@ "curate_universe": 1, "curesim": 2, "curl": 5073, - "curl-config": 5857, + "curl-config": 5858, "curlywhirly": 1, "curve_keygen": 68, "cusp": 23, @@ -9437,7 +9437,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5714, + "djpeg": 5715, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -9505,7 +9505,7 @@ "docker_test_script": 1, "docking_py": 1, "docopt.py": 1, - "docutils": 76, + "docutils": 77, "doesitcache": 46, "dof4": 1, "dof4a": 1, @@ -9922,7 +9922,7 @@ "eggnog_to_sqlite3.py": 2, "egrep": 19, "ehhbin": 1, - "eido": 7, + "eido": 8, "eigenstrat": 1, "eigenstratQTL": 1, "eigenstrat_database_tools": 1, @@ -9992,8 +9992,8 @@ "enano": 1, "enasearch": 1, "enc": 1, - "enc2xs": 1660, - "encguess": 1660, + "enc2xs": 1661, + "encguess": 1661, "encode2var": 1, "encode_dir": 1, "encode_exclude_loci": 1, @@ -10025,7 +10025,7 @@ "enumall": 1, "enumerate_paths.py": 1, "env": 82, - "env-execute": 6764, + "env-execute": 6767, "env.yml": 1, "env_parallel": 99, "env_parallel.ash": 99, @@ -10042,7 +10042,7 @@ "environment.yml": 1, "envpath": 3, "envset.cmd": 1, - "envsubst": 5252, + "envsubst": 5253, "eoulsan.sh": 1, "epa-ng": 4, "epestfind": 23, @@ -10254,7 +10254,7 @@ "exporTPP.pl": 2, "export-itol.pl": 1, "export2graphlan.py": 1, - "export2sam.pl": 498, + "export2sam.pl": 499, "exportTools.sh": 1, "export_mitochondrial_contigs.py": 1, "export_norm_data": 1, @@ -10402,7 +10402,7 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 1986, + "f2py": 1988, "f2py2": 134, "f2py2.7": 134, "f2py3": 1586, @@ -10523,7 +10523,7 @@ "fasta-most": 13, "fasta-nr": 4, "fasta-re-match": 8, - "fasta-sanitize.pl": 298, + "fasta-sanitize.pl": 299, "fasta-shuffle-letters": 13, "fasta-splitter": 1, "fasta-strip-identifier": 2, @@ -11421,7 +11421,7 @@ "font-awesome-to-png": 2, "font2c": 3, "fontinst": 1, - "fonttools": 371, + "fonttools": 372, "fop": 1, "forceOneClusterPerPairMem.py": 1, "forest.py": 1, @@ -11508,7 +11508,7 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5775, + "freetype-config": 5776, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -12511,9 +12511,9 @@ "getscu": 1, "getsize": 13, "getsnvfreq_by_interval": 1, - "gettext": 5252, - "gettext.sh": 5252, - "gettextize": 5252, + "gettext": 5253, + "gettext.sh": 5253, + "gettextize": 5253, "getuniqgenomealign": 1, "getuniqgenomealign_interval": 1, "getuniqgenomealign_sample_names": 1, @@ -12985,13 +12985,13 @@ "group_significance.py": 1, "groups": 82, "grow-readbank": 2, - "grpc_cpp_plugin": 127, - "grpc_csharp_plugin": 127, - "grpc_node_plugin": 127, - "grpc_objective_c_plugin": 127, - "grpc_php_plugin": 127, - "grpc_python_plugin": 127, - "grpc_ruby_plugin": 127, + "grpc_cpp_plugin": 128, + "grpc_csharp_plugin": 128, + "grpc_node_plugin": 128, + "grpc_objective_c_plugin": 128, + "grpc_php_plugin": 128, + "grpc_python_plugin": 128, + "grpc_ruby_plugin": 128, "gs": 104, "gsbj": 104, "gscat": 2, @@ -13018,7 +13018,7 @@ "gsnapl.sse42": 11, "gsnd": 104, "gsort": 5, - "gss-client": 5740, + "gss-client": 5741, "gss-server": 2, "gst-completion-helper": 1, "gst-device-monitor-1.0": 225, @@ -13173,7 +13173,7 @@ "guidescan_processer": 1, "gunc": 1, "gunicorn": 6, - "gunzip": 17, + "gunzip": 18, "guppy": 21, "guppy_basecaller": 1, "gushr.py": 1, @@ -13232,15 +13232,15 @@ "gxwf-to-format2": 1, "gxwf-to-native": 1, "gxwf-viz": 1, - "gzexe": 17, - "gzip": 17, + "gzexe": 18, + "gzip": 18, "h-num": 1, "h-num.pl": 3, "h264dec": 9, "h264enc": 9, "h2load": 3929, - "h2ph": 1660, - "h2xs": 1660, + "h2ph": 1661, + "h2xs": 1661, "h4_ncdump": 122, "h4_ncgen": 122, "h4cc": 122, @@ -13706,7 +13706,7 @@ "htseq-count": 22, "htseq-count-barcodes": 14, "htseq-qa": 22, - "htsfile": 683, + "htsfile": 684, "htsget": 2, "htsinfer": 1, "httpcfg": 15, @@ -13720,7 +13720,7 @@ "huge-split.pl": 1, "huggingface-cli": 2, "hulk": 1, - "humanfriendly": 97, + "humanfriendly": 98, "humann": 1, "humann2": 2, "humann2_associate": 1, @@ -13882,20 +13882,20 @@ "idfetch": 1, "idiag-socket-details": 6, "idle": 331, - "idle3": 3252, - "idle3.10": 785, - "idle3.11": 259, + "idle3": 3255, + "idle3.10": 786, + "idle3.11": 260, "idle3.12": 157, "idle3.4": 6, "idle3.5": 103, "idle3.6": 341, "idle3.7": 382, "idle3.8": 572, - "idle3.9": 647, + "idle3.9": 648, "idlj": 117, "idmatrix.sh": 29, "idn": 30, - "idn2": 245, + "idn2": 246, "idpAssemble": 2, "idpQonvert": 2, "idpQuery": 2, @@ -14077,7 +14077,7 @@ "indexdb_cat": 7, "indexdb_rna": 5, "indexer": 4, - "indexlr": 7, + "indexlr": 8, "indexmaker": 1, "indexpub": 1, "infer_bp.pl": 1, @@ -14095,11 +14095,11 @@ "infoalign": 23, "infoassembly": 23, "infobase": 23, - "infocmp": 7607, + "infocmp": 7610, "inforesidue": 23, "informant.py": 1, "infoseq": 23, - "infotocap": 7607, + "infotocap": 7610, "ini2xml": 1, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -14158,7 +14158,7 @@ "installpackages.R": 1, "installvst": 15, "instance_events": 28, - "instmodsh": 1660, + "instmodsh": 1661, "int_seqs_to_char_strings.py": 58, "intake": 1, "intake-server": 1, @@ -14189,7 +14189,7 @@ "interop_plot_qscore_histogram": 4, "interop_plot_sample_qc": 4, "interop_summary": 4, - "interpolate_sam.pl": 498, + "interpolate_sam.pl": 499, "interprophet.rb": 1, "interproscan.sh": 1, "intersect": 5, @@ -14490,11 +14490,11 @@ "joingenes": 15, "joint-indels": 1, "joint-parsimony": 1, - "jp.py": 98, + "jp.py": 99, "jpackage": 112, "jpeg2hdf": 122, - "jpegtran": 5714, - "jpgicc": 959, + "jpegtran": 5715, + "jpgicc": 960, "jpredapi": 1, "jps": 529, "jq": 300, @@ -14508,13 +14508,13 @@ "json2gff": 1, "json2xml": 189, "json_collect_data_source.py": 1, - "json_pp": 1660, + "json_pp": 1661, "json_xs": 335, "jsondiff": 8, "jsonl2xml": 1, "jsonpatch": 8, "jsonpointer": 10, - "jsonschema": 202, + "jsonschema": 203, "jstack": 529, "jstat": 529, "jstatd": 529, @@ -14535,7 +14535,7 @@ "junctionalReads.py": 2, "junctions_from_sam": 1, "junctools": 1, - "jupyter": 141, + "jupyter": 142, "jupyter-bundlerextension": 37, "jupyter-console": 12, "jupyter-contrib": 1, @@ -14548,7 +14548,7 @@ "jupyter-lab": 2, "jupyter-labextension": 2, "jupyter-labhub": 2, - "jupyter-migrate": 141, + "jupyter-migrate": 142, "jupyter-nbclassic": 3, "jupyter-nbclassic-bundlerextension": 3, "jupyter-nbclassic-extension": 3, @@ -14561,19 +14561,19 @@ "jupyter-run": 51, "jupyter-server": 5, "jupyter-serverextension": 37, - "jupyter-troubleshoot": 141, - "jupyter-trust": 134, + "jupyter-troubleshoot": 142, + "jupyter-trust": 135, "just-first-key": 1, "just_blast_test.pl": 1, "jwebserver": 30, - "k5srvutil": 5740, + "k5srvutil": 5741, "k8": 158, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5740, + "kadmin": 5741, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -14667,7 +14667,7 @@ "kdbmeta.3.0.0": 2, "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, - "kdestroy": 5740, + "kdestroy": 5741, "kea-config": 35, "keep-header": 1, "keep-ribo-periodic": 1, @@ -14677,7 +14677,7 @@ "keggcharter.py": 1, "keggpathway_map.py": 1, "keyFreq": 1, - "keyctl": 2370, + "keyctl": 2371, "keygen": 1, "keyring": 10, "keytool": 529, @@ -14708,7 +14708,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5740, + "kinit": 5741, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 45, @@ -14721,7 +14721,7 @@ "kitsch": 9, "kitsune": 1, "kleborate": 1, - "klist": 5740, + "klist": 5741, "kma": 18, "kma_index": 18, "kma_shm": 18, @@ -14806,7 +14806,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5740, + "kpasswd": 5741, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -14853,7 +14853,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5740, + "krb5-config": 5741, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -14869,9 +14869,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5740, + "ksu": 5741, "ksw": 1, - "kswitch": 5740, + "kswitch": 5741, "ktClassifyBLAST": 16, "ktClassifyHits": 12, "ktGetContigMagnitudes": 16, @@ -14902,12 +14902,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5740, + "ktutil": 5741, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5740, + "kvno": 5741, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15059,8 +15059,8 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4072, - "libdeflate-gzip": 4072, + "libdeflate-gunzip": 4074, + "libdeflate-gzip": 4074, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, @@ -15069,9 +15069,9 @@ "libiomp5md.dll": 1, "liblist.pl": 1, "liblist.pl.bak": 1, - "libnetcfg": 1660, - "libpng-config": 5827, - "libpng16-config": 5827, + "libnetcfg": 1661, + "libpng-config": 5828, + "libpng16-config": 5828, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15127,7 +15127,7 @@ "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 959, + "linkicc": 960, "linknets": 2, "links2sql.pl": 7, "linksBed": 266, @@ -15373,11 +15373,11 @@ "lrelease-qt4": 3, "lrsim": 1, "lrtk": 1, - "lrunzip": 8, - "lrzcat": 8, - "lrzip": 8, - "lrztar": 8, - "lrzuntar": 8, + "lrunzip": 9, + "lrzcat": 9, + "lrzip": 9, + "lrztar": 9, + "lrzuntar": 9, "ls": 81, "lsblk": 12, "lscpu": 12, @@ -15432,17 +15432,17 @@ "lz4_decompress": 2, "lz4c": 3493, "lz4cat": 3493, - "lzcat": 7434, - "lzcmp": 7434, - "lzdiff": 7434, - "lzegrep": 7434, - "lzfgrep": 7434, - "lzgrep": 7434, - "lzless": 7434, - "lzma": 7434, - "lzmadec": 7434, - "lzmainfo": 7434, - "lzmore": 7434, + "lzcat": 7437, + "lzcmp": 7437, + "lzdiff": 7437, + "lzegrep": 7437, + "lzfgrep": 7437, + "lzgrep": 7437, + "lzless": 7437, + "lzma": 7437, + "lzmadec": 7437, + "lzmainfo": 7437, + "lzmore": 7437, "lzop_build_offset_table.py": 58, "m-party": 1, "m-tx": 1, @@ -15698,6 +15698,7 @@ "make_gene_folder.py": 2, "make_gene_model.R": 5, "make_genome": 1, + "make_genome_bf": 1, "make_gnuplot_graph.pl": 1, "make_gnuplot_graph.pl.bak": 1, "make_go_index.py": 2, @@ -15867,8 +15868,8 @@ "mapula": 1, "mapview": 44, "mapviewToBed.pl": 1, - "maq2sam-long": 498, - "maq2sam-short": 498, + "maq2sam-long": 499, + "maq2sam-short": 499, "mareymaps_untrimmed.smk": 1, "marge": 1, "margin_cons": 2, @@ -15880,7 +15881,7 @@ "mark_partial_genes.py": 2, "mark_productivity": 1, "mark_prophage_features.py": 2, - "markdown-it": 39, + "markdown-it": 40, "markdown_py": 115, "markdups": 1, "markermagu": 1, @@ -16106,9 +16107,9 @@ "md5cp.2.11.0": 9, "md5cp.3": 2, "md5cp.3.0.0": 2, - "md5fa": 498, + "md5fa": 499, "md5sum": 82, - "md5sum-lite": 498, + "md5sum-lite": 499, "md_coords": 11, "mdasim": 1, "mdassembler": 15, @@ -16567,7 +16568,7 @@ "miR_PREFeR.py": 1, "miRge-build": 1, "miRge3.0": 1, - "mi_bf_generate": 1, + "mi_bf_generate": 2, "mi_msi_train_test": 1, "mia": 1, "micall": 1, @@ -16947,24 +16948,24 @@ "mseqtools": 1, "msformatter": 1, "msfragger": 2, - "msgattrib": 5252, - "msgcat": 5252, - "msgcmp": 5252, - "msgcomm": 5252, - "msgconv": 5252, - "msgen": 5252, - "msgexec": 5252, + "msgattrib": 5253, + "msgcat": 5253, + "msgcmp": 5253, + "msgcomm": 5253, + "msgconv": 5253, + "msgen": 5253, + "msgexec": 5253, "msgf2pin": 1, "msgf_plus": 3, - "msgfilter": 5252, - "msgfmt": 5252, + "msgfilter": 5253, + "msgfmt": 5253, "msgfplus_search.rb": 1, - "msggrep": 5252, - "msginit": 5252, - "msgmerge": 5252, + "msggrep": 5253, + "msginit": 5253, + "msgmerge": 5253, "msgserv": 1, - "msgunfmt": 5252, - "msguniq": 5252, + "msgunfmt": 5253, + "msguniq": 5253, "msi": 1, "msi_cluster2reads": 1, "msi_clustr2map.pl": 1, @@ -17239,9 +17240,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 6900, + "ncurses6-config": 6903, "ncursesw5-config": 703, - "ncursesw6-config": 6901, + "ncursesw6-config": 6904, "ndg_httpclient": 2, "ndisasm": 1, "ndmetis": 57, @@ -17330,7 +17331,7 @@ "nf-test": 1, "nfe-umbrella-slice": 6, "ngd": 9, - "ngettext": 5252, + "ngettext": 5253, "ngg_barabasi_albert": 2, "ngg_barbell": 2, "ngg_complete": 2, @@ -17340,9 +17341,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4409, - "nghttpd": 4409, - "nghttpx": 4409, + "nghttp": 4410, + "nghttpd": 4410, + "nghttpx": 4410, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -17483,7 +17484,7 @@ "normalize_multicov.pl": 1, "normalize_oneD.R": 1, "normalize_table.py": 1, - "normalizer": 441, + "normalizer": 442, "normandcorrectwrapper.sh": 1, "nose2": 1, "nose2-2.7": 1, @@ -17500,7 +17501,7 @@ "novasplice": 1, "novo2maq": 1, "novo2paf": 2, - "novo2sam.pl": 499, + "novo2sam.pl": 500, "novoBreak": 1, "novoalign": 2, "novoalign-license-register": 2, @@ -17535,14 +17536,17 @@ "ntJoin": 1, "ntLink": 3, "ntLink_rounds": 3, + "ntRootAncestryPredictor.pl": 1, "ntSynt": 1, "ntbtls-config": 2, - "ntcard": 6, + "ntcard": 7, "ntdpal": 2, - "ntedit": 1, + "ntedit": 2, "ntedit-gr": 1, - "nthits": 3, - "nthll": 6, + "ntedit_run_pipeline.smk": 1, + "nthits": 4, + "nthits-bfq": 1, + "nthll": 7, "nthseq": 23, "nthseqset": 23, "ntjoin.py": 1, @@ -17553,6 +17557,8 @@ "ntm-profiler": 1, "ntresc03.pdb": 1, "ntresc03n.pdb": 1, + "ntroot": 1, + "ntroot_run_pipeline.smk": 1, "ntscan_unit_test": 5, "ntsynt_make_common_bf": 1, "ntsynt_make_repeat_bfs.py": 1, @@ -17860,11 +17866,11 @@ "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 7676, + "openssl": 7679, "opentargets_validator": 1, - "opj_compress": 615, - "opj_decompress": 615, - "opj_dump": 615, + "opj_compress": 616, + "opj_decompress": 616, + "opj_dump": 616, "opl2ofm": 1, "opsin": 1, "opt": 6, @@ -18572,7 +18578,7 @@ "perf": 1, "perfect-square": 2, "perform_controls.pl": 1, - "perl": 1660, + "perl": 1661, "perl-doc": 2, "perl-reversion": 9, "perl5.22.0": 54, @@ -18580,12 +18586,12 @@ "perl5.26.2": 369, "perl5.30.3": 5, "perl5.32.0": 64, - "perl5.32.1": 1168, - "perlbug": 1660, - "perldoc": 1660, - "perlivp": 1660, + "perl5.32.1": 1169, + "perlbug": 1661, + "perldoc": 1661, + "perlivp": 1661, "perltex": 1, - "perlthanks": 1660, + "perlthanks": 1661, "permuteGPAT++": 31, "permuteSmooth": 31, "permute_structure.pl": 1, @@ -18914,7 +18920,7 @@ "pickle_cat.py": 1, "pickorientation.awk": 1, "pickout": 1, - "piconv": 1660, + "piconv": 1661, "picopore": 1, "picopore-realtime": 1, "picopore-rename": 1, @@ -18922,7 +18928,7 @@ "picrust2_pipeline.py": 1, "pidof": 1, "pigeon": 1, - "pigz": 111, + "pigz": 112, "pilconvert.py": 23, "pildriver.py": 23, "pilercr": 7, @@ -18953,10 +18959,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3583, + "pip": 3586, "pip2": 1, "pip2.7": 1, - "pip3": 2509, + "pip3": 2512, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 1, @@ -19111,9 +19117,9 @@ "pktogf": 1, "pktype": 1, "pl2bat.pl": 3, - "pl2pm": 1660, + "pl2pm": 1661, "plaScope.sh": 1, - "plac_runner.py": 58, + "plac_runner.py": 59, "place_orient1.smk": 1, "place_orient2.smk": 1, "place_orient3.smk": 1, @@ -19146,8 +19152,8 @@ "plip": 1, "plncpro": 1, "plncpro_format_ff.sh": 1, - "plot-ampliconstats": 304, - "plot-bamstats": 498, + "plot-ampliconstats": 305, + "plot-bamstats": 499, "plot-bmprobs": 4, "plot-cnv": 1, "plot-insert-size-distribution": 2, @@ -19304,21 +19310,21 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 5827, + "png-fix-itxt": 5828, "pngcp": 89, - "pngfix": 5827, + "pngfix": 5828, "pngtogd": 230, "pngtogd2": 230, "pnps-gen": 1, "poa": 15, "pocheck": 1, "poclcc": 3, - "pod2html": 1660, - "pod2man": 1660, - "pod2text": 1660, - "pod2usage": 1660, + "pod2html": 1661, + "pod2man": 1661, + "pod2text": 1661, + "pod2usage": 1661, "pod_cover": 12, - "podchecker": 1660, + "podchecker": 1661, "podselect": 437, "poetry": 6, "pointwise_datasets_concatenator.py": 1, @@ -19529,6 +19535,7 @@ "primalscheme": 1, "primary_transcript.py": 1, "primer3_core": 2, + "primerForge": 1, "primer_average.py": 1, "primerclip": 1, "primersearch": 23, @@ -19743,7 +19750,7 @@ "protmapper": 1, "protobuf-net.dll": 2, "protobuf-net.xml": 2, - "protoc": 242, + "protoc": 243, "protoc-23.1.0": 1, "protoc-23.3.0": 4, "protoc-23.4.0": 6, @@ -19751,6 +19758,7 @@ "protoc-24.4.0": 16, "protoc-25.1.0": 4, "protoc-25.2.0": 2, + "protoc-25.3.0": 1, "protoc-gen-grpclib_python": 1, "protoc-gen-mypy": 1, "protoc-gen-mypy_grpc": 1, @@ -19778,7 +19786,7 @@ "protxml_to_table.rb": 1, "prov-compare": 9, "prov-convert": 9, - "prove": 1660, + "prove": 1661, "provean": 1, "provean.sh": 1, "provis": 1, @@ -19825,7 +19833,7 @@ "psiblast": 309, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 959, + "psicc": 960, "psiclass": 1, "psiphi": 23, "psite": 3, @@ -19835,7 +19843,7 @@ "psl2bed-float128": 14, "psl2bed-megarow": 14, "psl2bed-typical": 14, - "psl2sam.pl": 498, + "psl2sam.pl": 499, "psl2starch": 14, "psl2starch-float128": 14, "psl2starch-megarow": 14, @@ -19877,9 +19885,9 @@ "pt2to3": 72, "ptGAUL.sh": 1, "ptangle": 1, - "ptar": 1660, - "ptardiff": 1660, - "ptargrep": 1660, + "ptar": 1661, + "ptardiff": 1661, + "ptargrep": 1661, "ptdump": 72, "ptest": 1, "ptex": 1, @@ -19902,7 +19910,7 @@ "pull_database.py": 1, "pullseq": 2, "pulpdoctest": 2, - "pulptest": 85, + "pulptest": 86, "pulseaudio": 25, "puncsamfile.sh": 1, "pureclip": 1, @@ -19985,7 +19993,7 @@ "pxvcf2fa": 1, "py": 1, "py-spy": 6, - "py.test": 136, + "py.test": 137, "py.test-3.5": 2, "py.test-benchmark": 1, "py2": 1, @@ -20054,17 +20062,17 @@ "pydamage": 1, "pydemult": 1, "pydicom": 1, - "pydoc": 3582, - "pydoc3": 3252, - "pydoc3.10": 785, - "pydoc3.11": 259, + "pydoc": 3585, + "pydoc3": 3255, + "pydoc3.10": 786, + "pydoc3.11": 260, "pydoc3.12": 157, "pydoc3.4": 6, "pydoc3.5": 103, "pydoc3.6": 341, "pydoc3.7": 382, "pydoc3.8": 572, - "pydoc3.9": 647, + "pydoc3.9": 648, "pydownsampler": 1, "pyega3": 1, "pyemojify": 1, @@ -20079,12 +20087,12 @@ "pyflyte-execute": 1, "pyflyte-fast-execute": 1, "pyflyte-map-execute": 1, - "pyftmerge": 371, - "pyftsubset": 371, + "pyftmerge": 372, + "pyftsubset": 372, "pygal_gen.py": 2, "pygenetic_code": 1, "pygmentex": 1, - "pygmentize": 236, + "pygmentize": 237, "pygmes": 1, "pygrun": 1, "pygtail": 2, @@ -20151,14 +20159,14 @@ "pyrovelocity": 1, "pyrpipe": 1, "pyrpipe_diagnostic": 1, - "pyrsa-decrypt": 146, + "pyrsa-decrypt": 147, "pyrsa-decrypt-bigfile": 12, - "pyrsa-encrypt": 146, + "pyrsa-encrypt": 147, "pyrsa-encrypt-bigfile": 12, - "pyrsa-keygen": 146, - "pyrsa-priv2pub": 146, - "pyrsa-sign": 146, - "pyrsa-verify": 146, + "pyrsa-keygen": 147, + "pyrsa-priv2pub": 147, + "pyrsa-sign": 147, + "pyrsa-verify": 147, "pysamstats": 4, "pyscss": 3, "pyseer": 1, @@ -20179,10 +20187,10 @@ "pystache": 1, "pystache-test": 1, "pytensor-cache": 1, - "pytest": 136, + "pytest": 137, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3583, + "python": 3586, "python-argcomplete-check-easy-install-script": 337, "python-argcomplete-tcsh": 191, "python-build": 2, @@ -20193,13 +20201,13 @@ "python2.5-config": 1, "python2.7": 330, "python2.7-config": 313, - "python3": 3253, - "python3-config": 3252, - "python3.1": 1201, - "python3.10": 785, - "python3.10-config": 785, - "python3.11": 259, - "python3.11-config": 259, + "python3": 3256, + "python3-config": 3255, + "python3.1": 1203, + "python3.10": 786, + "python3.10-config": 786, + "python3.11": 260, + "python3.11-config": 260, "python3.12": 157, "python3.12-config": 157, "python3.4": 6, @@ -20220,8 +20228,8 @@ "python3.7m-config": 382, "python3.8": 572, "python3.8-config": 572, - "python3.9": 647, - "python3.9-config": 647, + "python3.9": 648, + "python3.9-config": 648, "pythonsh": 2, "pythontex": 1, "pytleap": 6, @@ -20491,7 +20499,7 @@ "randomly_subsample_fastq.py": 2, "randomreads.sh": 29, "randrep": 1, - "randseq": 1, + "randseq": 2, "randtree": 6, "rangen": 3, "rank-script.sh": 1, @@ -20588,7 +20596,7 @@ "rdfgraphisomorphism": 32, "rdfpipe": 32, "rdfs2dot": 32, - "rdjpgcom": 5714, + "rdjpgcom": 5715, "rdkit2fps": 1, "rdma_client": 16, "rdma_server": 16, @@ -20680,7 +20688,7 @@ "recgraph": 1, "reciprocal_blast_local": 1, "reciprocal_blast_local.py": 1, - "recode-sr-latin": 5252, + "recode-sr-latin": 5253, "recode_dir": 1, "recode_dir_legacy": 1, "recoder": 23, @@ -21041,7 +21049,7 @@ "rescue_fusion.py": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7607, + "reset": 7610, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -21346,18 +21354,18 @@ "rsidx": 1, "rsq": 1, "rsrq": 1, - "rst2html.py": 182, - "rst2html4.py": 174, - "rst2html5.py": 179, - "rst2latex.py": 182, - "rst2man.py": 182, - "rst2odt.py": 182, - "rst2odt_prepstyles.py": 182, - "rst2pseudoxml.py": 182, - "rst2s5.py": 182, - "rst2xetex.py": 182, - "rst2xml.py": 182, - "rstpep2html.py": 182, + "rst2html.py": 183, + "rst2html4.py": 175, + "rst2html5.py": 180, + "rst2latex.py": 183, + "rst2man.py": 183, + "rst2odt.py": 183, + "rst2odt_prepstyles.py": 183, + "rst2pseudoxml.py": 183, + "rst2s5.py": 183, + "rst2xetex.py": 183, + "rst2xml.py": 183, + "rstpep2html.py": 183, "rstream": 16, "rsv-typer": 1, "rsvg-convert": 165, @@ -21391,6 +21399,7 @@ "run-mummer3": 44, "run-ncbi-converter": 276, "run-ncbi-converter.bak": 1, + "run-ntedit": 1, "run-roh.pl": 155, "run-rpbp-pipeline": 2, "run-sepp.sh": 4, @@ -21720,7 +21729,7 @@ "sam2starch-float128": 14, "sam2starch-megarow": 14, "sam2starch-typical": 14, - "sam2vcf.pl": 498, + "sam2vcf.pl": 499, "samFLAGinfo.pl": 1, "samFilter": 1, "samMap.pl": 14, @@ -21778,8 +21787,8 @@ "samtoh5": 1, "samtom4": 1, "samtom5_dir": 1, - "samtools": 523, - "samtools.pl": 498, + "samtools": 524, + "samtools.pl": 499, "samtools_0.1.18": 3, "samtools_mpileup_to_var": 1, "samtoroc.sh": 29, @@ -21962,7 +21971,7 @@ "scitokens-test": 1, "scitokens-test-access": 1, "scitokens-verify": 1, - "sclient": 5740, + "sclient": 5741, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -22180,7 +22189,7 @@ "seq2onehot": 1, "seq2profile.pl": 5, "seq2science": 2, - "seq_cache_populate.pl": 498, + "seq_cache_populate.pl": 499, "seq_count": 2, "seq_diff": 1, "seq_download.py": 2, @@ -22377,7 +22386,7 @@ "sharq.3": 2, "sharq.3.0.0": 2, "shasta": 1, - "shasum": 1660, + "shasum": 1661, "shed-tools": 2, "shell_utils.py": 1, "shiboken2": 2, @@ -22472,7 +22481,7 @@ "sim-cover2": 2, "sim-shotgun": 2, "sim4db": 3, - "sim_client": 5740, + "sim_client": 5741, "sim_reads": 10, "sim_reads.o": 10, "sim_reads_tran": 10, @@ -22660,8 +22669,8 @@ "snakedeploy": 1, "snakefmt": 1, "snakelines": 1, - "snakemake": 101, - "snakemake-bash-completion": 101, + "snakemake": 102, + "snakemake-bash-completion": 102, "snakemake_util.py": 2, "snakeparse": 1, "snakeviz": 1, @@ -22732,7 +22741,7 @@ "snver-pool": 1, "soap": 2, "soap.coverage": 2, - "soap2sam.pl": 498, + "soap2sam.pl": 499, "soapcpp2": 1, "soapsplice": 1, "soapsuds": 15, @@ -22881,7 +22890,7 @@ "sphinx-quickstart": 39, "spine.pl": 1, "spinner.py": 1, - "splain": 1660, + "splain": 1661, "splash": 1, "splice_site_summary.pl": 1, "spliceai": 1, @@ -23019,7 +23028,7 @@ "sqlformat": 9, "sqlite.pl": 1, "sqlite3": 2704, - "sqlite3_analyzer": 7021, + "sqlite3_analyzer": 7024, "sqlitebrowser": 1, "sqlmetal": 15, "sqlsharp": 15, @@ -23325,7 +23334,7 @@ "stochastic": 4, "stochastic-smp": 4, "stock2ali.pl": 1, - "stone": 43, + "stone": 44, "storescp": 1, "storescu": 1, "str8rzr": 1, @@ -23354,7 +23363,7 @@ "streamlit": 6, "streamlit.cmd": 6, "streamsam.sh": 29, - "streamzip": 1232, + "streamzip": 1233, "streme": 6, "streme_xml_to_html": 6, "stress-ng": 1, @@ -23609,7 +23618,7 @@ "tab2krona.py": 1, "tab2mapper.pl": 1, "tab2ovls": 2, - "tabix": 687, + "tabix": 688, "tabix++": 23, "table2asn": 2, "table_add_column.py": 58, @@ -23618,8 +23627,8 @@ "tableproxy64": 1, "tableschema": 1, "tablet": 1, - "tabs": 7607, - "tabulate": 122, + "tabs": 7610, + "tabulate": 123, "tabulate.py": 1, "tabulator": 1, "tabutils": 1, @@ -23710,7 +23719,7 @@ "tantan": 1, "tap": 1, "tap2": 1, - "tar": 52, + "tar": 53, "taranis.py": 1, "taranis_configuration.py": 1, "tarchive2amos": 2, @@ -23785,9 +23794,9 @@ "tbtamr": 1, "tbvcfreport": 1, "tcdemux": 1, - "tclsh": 7258, + "tclsh": 7261, "tclsh8.5": 473, - "tclsh8.6": 7021, + "tclsh8.6": 7024, "tcode": 23, "tcsh": 3, "td_bignet": 2, @@ -23983,7 +23992,7 @@ "thumbpdf": 1, "tiara": 2, "tiara-test": 2, - "tic": 7607, + "tic": 7610, "tiddit": 1, "tides": 1, "tidk": 1, @@ -23998,16 +24007,16 @@ "tiff2rgba": 5291, "tiffcmp": 5291, "tiffcomment": 17, - "tiffcp": 5468, + "tiffcp": 5469, "tiffcrop": 5291, "tiffdither": 5291, - "tiffdump": 5468, + "tiffdump": 5469, "tifffile": 20, - "tiffinfo": 5468, + "tiffinfo": 5469, "tiffmedian": 5291, - "tiffset": 5468, - "tiffsplit": 5468, - "tificc": 959, + "tiffset": 5469, + "tiffsplit": 5469, + "tificc": 960, "tigStore": 3, "tiger-hash": 11, "tigge_check": 1, @@ -24061,7 +24070,7 @@ "titan-gc-prepare.py": 1, "titan.py": 1, "titration": 2, - "tjbench": 343, + "tjbench": 344, "tkconch": 1, "tkpp": 1, "tksm": 1, @@ -24091,7 +24100,7 @@ "to_upper_case.pl.bak": 1, "toco": 73, "toco_from_protos": 73, - "toe": 7607, + "toe": 7610, "tohnsw": 1, "toil": 3, "toil-cwl-runner": 3, @@ -24139,7 +24148,7 @@ "tpp_hostname": 2, "tpp_models.pl": 2, "tpptray.bat": 2, - "tput": 7607, + "tput": 7610, "tqdm": 330, "tr": 82, "trace_comment": 2, @@ -24208,7 +24217,7 @@ "transform_gfa.py": 1, "transformers-cli": 2, "transformseq": 13, - "transicc": 959, + "transicc": 960, "transit": 1, "transition_counter": 1, "transl": 1, @@ -24359,7 +24368,7 @@ "tryptic.py": 1, "ts": 3, "tsebra.py": 3, - "tset": 7607, + "tset": 7610, "tskit": 6, "tsort": 82, "tsp": 2, @@ -24394,7 +24403,7 @@ "tth-hash": 11, "ttree": 66, "tts": 5, - "ttx": 371, + "ttx": 372, "tty": 82, "turbocor": 1, "tutorial_eqtlbma.R": 1, @@ -24471,7 +24480,7 @@ "unbug.pl": 1, "unbug.sh": 1, "unbug_xarg.sh": 1, - "uncompress": 17, + "uncompress": 18, "uncovered": 2, "undersampling": 1, "undexar": 1, @@ -24532,14 +24541,14 @@ "unix2mac": 1, "unlink": 82, "unlz4": 3493, - "unlzma": 7434, + "unlzma": 7437, "unmapped2anchors.py": 1, "unmerge": 1, "unmerge-paired-reads.sh": 2, "unnaf": 1, "unpack200": 419, "unpickle.py": 1, - "unpigz": 111, + "unpigz": 112, "unquip": 1, "unshare": 12, "unsquashfs": 3, @@ -24549,7 +24558,7 @@ "unstarch-typical": 14, "untangle": 2, "unweight_fasta.py": 1, - "unxz": 7659, + "unxz": 7662, "unzip": 32, "unzip.sh": 28, "unziphdf5": 1, @@ -24557,7 +24566,7 @@ "unzipont": 1, "unzipont_dir": 1, "unzipsfx": 25, - "unzstd": 5124, + "unzstd": 5126, "update-blastdb.py": 1, "update-serotypefinder-db": 1, "update-sort-bed-migrate-candidates": 14, @@ -24628,7 +24637,7 @@ "utmpdump": 12, "utrgff2gbrowse.pl": 14, "utrrnaseq": 12, - "uuclient": 5740, + "uuclient": 5741, "uuid": 34, "uuid-config": 34, "uuidgen": 12, @@ -25302,16 +25311,16 @@ "wg-blimp": 1, "wgMLST": 1, "wgdi": 1, - "wget": 403, + "wget": 404, "wgetdir": 1, "wgmlst": 1, "wgs2ncbi": 1, - "wgsim": 499, - "wgsim_eval.pl": 499, + "wgsim": 500, + "wgsim_eval.pl": 500, "wham": 1, "whamg": 1, "whatshap": 14, - "wheel": 3582, + "wheel": 3585, "wheezy.template": 2, "whereis": 12, "which": 1, @@ -25354,9 +25363,9 @@ "winnowmap": 3, "wiq.py": 1, "wisestork": 1, - "wish": 7258, + "wish": 7261, "wish8.5": 473, - "wish8.6": 7021, + "wish8.6": 7024, "wkhtmltoimage": 2, "wkhtmltopdf": 2, "wlmscpfs": 1, @@ -25405,7 +25414,7 @@ "write_strain_fasta.py": 1, "writedb_entry": 1, "writedb_unit_test": 5, - "wrjpgcom": 5714, + "wrjpgcom": 5715, "ws": 2, "wsdl": 15, "wsdl2": 15, @@ -25471,7 +25480,7 @@ "x86_64-conda-linux-gnu-gfortran": 3322, "x86_64-conda-linux-gnu-gfortran.bin": 575, "x86_64-conda-linux-gnu-gprof": 3357, - "x86_64-conda-linux-gnu-ld": 5408, + "x86_64-conda-linux-gnu-ld": 5411, "x86_64-conda-linux-gnu-ld.bfd": 3357, "x86_64-conda-linux-gnu-ld.gold": 3357, "x86_64-conda-linux-gnu-nm": 3357, @@ -25507,7 +25516,7 @@ "x86_64-conda_cos6-linux-gnu-gfortran": 4091, "x86_64-conda_cos6-linux-gnu-gfortran.bin": 1344, "x86_64-conda_cos6-linux-gnu-gprof": 4124, - "x86_64-conda_cos6-linux-gnu-ld": 6242, + "x86_64-conda_cos6-linux-gnu-ld": 6245, "x86_64-conda_cos6-linux-gnu-ld.bfd": 4124, "x86_64-conda_cos6-linux-gnu-ld.gold": 4124, "x86_64-conda_cos6-linux-gnu-nm": 4124, @@ -25546,7 +25555,7 @@ "xgboost": 26, "xgboost.dll": 1, "xgboost.lib": 1, - "xgettext": 5252, + "xgettext": 5253, "xgui": 2, "xhmm": 1, "xinteract": 2, @@ -25617,7 +25626,7 @@ "xsltproc_lite": 7, "xstreme": 2, "xstreme_html_to_tsv": 2, - "xsubpp": 1660, + "xsubpp": 1661, "xsv": 1, "xtandem": 3, "xtb": 1, @@ -25639,16 +25648,16 @@ "xxhsum": 30, "xy-plot": 88, "xyalign": 1, - "xz": 7659, - "xzcat": 7434, - "xzcmp": 7434, - "xzdec": 7434, - "xzdiff": 7434, - "xzegrep": 7434, - "xzfgrep": 7434, - "xzgrep": 7434, - "xzless": 7434, - "xzmore": 7434, + "xz": 7662, + "xzcat": 7437, + "xzcmp": 7437, + "xzdec": 7437, + "xzdiff": 7437, + "xzegrep": 7437, + "xzfgrep": 7437, + "xzgrep": 7437, + "xzless": 7437, + "xzmore": 7437, "y2racc": 7, "yacc": 4, "yacht": 1, @@ -25685,46 +25694,46 @@ "yplan": 1, "yq": 289, "ytasm": 1, - "yte": 56, + "yte": 57, "zagros": 1, "zarp": 1, - "zcat": 17, - "zcmp": 17, + "zcat": 18, + "zcmp": 18, "zdb": 1, - "zdiff": 17, + "zdiff": 18, "zdump": 42, - "zegrep": 17, + "zegrep": 18, "zerone": 1, "zeta.r": 1, "zeta.r.bak": 1, "zff2genbank.pl": 1, "zff2gff3.pl": 2, - "zfgrep": 17, - "zforce": 17, + "zfgrep": 18, + "zforce": 18, "zfp": 20, "zga": 1, - "zgrep": 17, + "zgrep": 18, "zic": 42, - "zip": 15, + "zip": 16, "zipHomerResults.pl": 5, - "zipcloak": 1, + "zipcloak": 2, "zipcmp": 90, - "zipdetails": 1660, + "zipdetails": 1661, "zipgrep": 25, "zipinfo": 25, "zipmerge": 90, - "zipnote": 1, - "zipsplit": 1, + "zipnote": 2, + "zipsplit": 2, "ziptool": 90, "zless": 5, "zlib.net.dll": 4, "zlib_decompress": 5, - "zmore": 17, + "zmore": 18, "zmwfilter": 3, - "znew": 17, + "znew": 18, "zol": 1, "zoom": 1, - "zoom2sam.pl": 498, + "zoom2sam.pl": 499, "zopfli": 20, "zopflipng": 20, "zorro": 1, @@ -25734,10 +25743,10 @@ "zrun": 3, "zsh": 3, "zsh-5.8": 3, - "zstd": 5124, - "zstdcat": 5124, - "zstdgrep": 4922, - "zstdless": 4922, - "zstdmt": 5124, + "zstd": 5126, + "zstdcat": 5126, + "zstdgrep": 4924, + "zstdless": 4924, + "zstdmt": 5126, "ztr_dump": 2 } \ No newline at end of file diff --git a/quay.io/biocontainers/g/gb-io:0.3.1--py310he6195e5_0.json b/quay.io/biocontainers/g/gb-io:0.3.1--py310he6195e5_0.json new file mode 100644 index 0000000..79f6c5d --- /dev/null +++ b/quay.io/biocontainers/g/gb-io:0.3.1--py310he6195e5_0.json @@ -0,0 +1,74 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.10": "/usr/local/bin/2to3-3.10", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "idle3": "/usr/local/bin/idle3", + "idle3.10": "/usr/local/bin/idle3.10", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.10": "/usr/local/bin/pydoc3.10", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.10": "/usr/local/bin/python3.10", + "python3.10-config": "/usr/local/bin/python3.10-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "env-execute": "/usr/local/env-execute" +} \ No newline at end of file diff --git a/quay.io/biocontainers/n/ntroot:1.0.0--py39h68928f9_0.json b/quay.io/biocontainers/n/ntroot:1.0.0--py39h68928f9_0.json new file mode 100644 index 0000000..a512ea8 --- /dev/null +++ b/quay.io/biocontainers/n/ntroot:1.0.0--py39h68928f9_0.json @@ -0,0 +1,275 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.9": "/usr/local/bin/2to3-3.9", + "ace2sam": "/usr/local/bin/ace2sam", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annot-tsv": "/usr/local/bin/annot-tsv", + "autopoint": "/usr/local/bin/autopoint", + "bgzip": "/usr/local/bin/bgzip", + "blast2sam.pl": "/usr/local/bin/blast2sam.pl", + "bowtie2sam.pl": "/usr/local/bin/bowtie2sam.pl", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "cbc": "/usr/local/bin/cbc", + "clear": "/usr/local/bin/clear", + "clp": "/usr/local/bin/clp", + "compile_et": "/usr/local/bin/compile_et", + "corelist": "/usr/local/bin/corelist", + "cpan": "/usr/local/bin/cpan", + "curl-config": "/usr/local/bin/curl-config", + "docutils": "/usr/local/bin/docutils", + "eido": "/usr/local/bin/eido", + "enc2xs": "/usr/local/bin/enc2xs", + "encguess": "/usr/local/bin/encguess", + "envsubst": "/usr/local/bin/envsubst", + "export2sam.pl": "/usr/local/bin/export2sam.pl", + "f2py": "/usr/local/bin/f2py", + "fasta-sanitize.pl": "/usr/local/bin/fasta-sanitize.pl", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "grpc_cpp_plugin": "/usr/local/bin/grpc_cpp_plugin", + "grpc_csharp_plugin": "/usr/local/bin/grpc_csharp_plugin", + "grpc_node_plugin": "/usr/local/bin/grpc_node_plugin", + "grpc_objective_c_plugin": "/usr/local/bin/grpc_objective_c_plugin", + "grpc_php_plugin": "/usr/local/bin/grpc_php_plugin", + "grpc_python_plugin": "/usr/local/bin/grpc_python_plugin", + "grpc_ruby_plugin": "/usr/local/bin/grpc_ruby_plugin", + "gss-client": "/usr/local/bin/gss-client", + "gunzip": "/usr/local/bin/gunzip", + "gzexe": "/usr/local/bin/gzexe", + "gzip": "/usr/local/bin/gzip", + "h2ph": "/usr/local/bin/h2ph", + "h2xs": "/usr/local/bin/h2xs", + "htsfile": "/usr/local/bin/htsfile", + "humanfriendly": "/usr/local/bin/humanfriendly", + "idle3": "/usr/local/bin/idle3", + "idle3.9": "/usr/local/bin/idle3.9", + "idn2": "/usr/local/bin/idn2", + "indexlr": "/usr/local/bin/indexlr", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "instmodsh": "/usr/local/bin/instmodsh", + "interpolate_sam.pl": "/usr/local/bin/interpolate_sam.pl", + "jp.py": "/usr/local/bin/jp.py", + "json_pp": "/usr/local/bin/json_pp", + "jsonschema": "/usr/local/bin/jsonschema", + "jupyter": "/usr/local/bin/jupyter", + "jupyter-migrate": "/usr/local/bin/jupyter-migrate", + "jupyter-troubleshoot": "/usr/local/bin/jupyter-troubleshoot", + "jupyter-trust": "/usr/local/bin/jupyter-trust", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libnetcfg": "/usr/local/bin/libnetcfg", + "lrunzip": "/usr/local/bin/lrunzip", + "lrzcat": "/usr/local/bin/lrzcat", + "lrzip": "/usr/local/bin/lrzip", + "lrztar": "/usr/local/bin/lrztar", + "lrzuntar": "/usr/local/bin/lrzuntar", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make_genome_bf": "/usr/local/bin/make_genome_bf", + "maq2sam-long": "/usr/local/bin/maq2sam-long", + "maq2sam-short": "/usr/local/bin/maq2sam-short", + "markdown-it": "/usr/local/bin/markdown-it", + "md5fa": "/usr/local/bin/md5fa", + "md5sum-lite": "/usr/local/bin/md5sum-lite", + "mi_bf_generate": "/usr/local/bin/mi_bf_generate", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": 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"protoc-25.3.0": "/usr/local/bin/protoc-25.3.0", + "prove": "/usr/local/bin/prove", + "psl2sam.pl": "/usr/local/bin/psl2sam.pl", + "ptar": "/usr/local/bin/ptar", + "ptardiff": "/usr/local/bin/ptardiff", + "ptargrep": "/usr/local/bin/ptargrep", + "pulptest": "/usr/local/bin/pulptest", + "py.test": "/usr/local/bin/py.test", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.9": "/usr/local/bin/pydoc3.9", + "pygmentize": "/usr/local/bin/pygmentize", + "pyrsa-decrypt": "/usr/local/bin/pyrsa-decrypt", + "pyrsa-encrypt": "/usr/local/bin/pyrsa-encrypt", + "pyrsa-keygen": "/usr/local/bin/pyrsa-keygen", + "pyrsa-priv2pub": "/usr/local/bin/pyrsa-priv2pub", + "pyrsa-sign": "/usr/local/bin/pyrsa-sign", + "pyrsa-verify": "/usr/local/bin/pyrsa-verify", + "pytest": "/usr/local/bin/pytest", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.9": "/usr/local/bin/python3.9", + "python3.9-config": "/usr/local/bin/python3.9-config", + "randseq": "/usr/local/bin/randseq", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "reset": "/usr/local/bin/reset", + "rst2html.py": "/usr/local/bin/rst2html.py", + "rst2html4.py": "/usr/local/bin/rst2html4.py", + "rst2html5.py": "/usr/local/bin/rst2html5.py", + "rst2latex.py": "/usr/local/bin/rst2latex.py", + "rst2man.py": "/usr/local/bin/rst2man.py", + "rst2odt.py": "/usr/local/bin/rst2odt.py", + "rst2odt_prepstyles.py": "/usr/local/bin/rst2odt_prepstyles.py", + "rst2pseudoxml.py": "/usr/local/bin/rst2pseudoxml.py", + "rst2s5.py": "/usr/local/bin/rst2s5.py", + "rst2xetex.py": "/usr/local/bin/rst2xetex.py", + "rst2xml.py": "/usr/local/bin/rst2xml.py", + "rstpep2html.py": "/usr/local/bin/rstpep2html.py", + "run-ntedit": "/usr/local/bin/run-ntedit", + "sam2vcf.pl": "/usr/local/bin/sam2vcf.pl", + "samtools": "/usr/local/bin/samtools", + "samtools.pl": "/usr/local/bin/samtools.pl", + "sclient": "/usr/local/bin/sclient", + "seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl", + "shasum": "/usr/local/bin/shasum", + "sim_client": "/usr/local/bin/sim_client", + "snakemake": "/usr/local/bin/snakemake", + "snakemake-bash-completion": "/usr/local/bin/snakemake-bash-completion", + "soap2sam.pl": "/usr/local/bin/soap2sam.pl", + "splain": "/usr/local/bin/splain", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "stone": "/usr/local/bin/stone", + "streamzip": "/usr/local/bin/streamzip", + "tabix": "/usr/local/bin/tabix", + "tabs": "/usr/local/bin/tabs", + "tabulate": "/usr/local/bin/tabulate", + "tar": "/usr/local/bin/tar", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "uncompress": "/usr/local/bin/uncompress", + "unlzma": "/usr/local/bin/unlzma", + "unpigz": "/usr/local/bin/unpigz", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wget": "/usr/local/bin/wget", + "wgsim": "/usr/local/bin/wgsim", + "wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xgettext": "/usr/local/bin/xgettext", + "xsubpp": "/usr/local/bin/xsubpp", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "yte": "/usr/local/bin/yte", + "zcat": "/usr/local/bin/zcat", + "zcmp": "/usr/local/bin/zcmp", + "zdiff": "/usr/local/bin/zdiff", + "zegrep": "/usr/local/bin/zegrep", + "zfgrep": "/usr/local/bin/zfgrep", + "zforce": "/usr/local/bin/zforce", + "zgrep": "/usr/local/bin/zgrep", + "zip": "/usr/local/bin/zip", + "zipcloak": "/usr/local/bin/zipcloak", + "zipdetails": "/usr/local/bin/zipdetails", + "zipnote": "/usr/local/bin/zipnote", + "zipsplit": "/usr/local/bin/zipsplit", + "zmore": "/usr/local/bin/zmore", + "znew": "/usr/local/bin/znew", + "zoom2sam.pl": "/usr/local/bin/zoom2sam.pl", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt", + "env-execute": "/usr/local/env-execute" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/primerforge:0.7.4--pyhdfd78af_0.json b/quay.io/biocontainers/p/primerforge:0.7.4--pyhdfd78af_0.json new file mode 100644 index 0000000..6b10a29 --- /dev/null +++ b/quay.io/biocontainers/p/primerforge:0.7.4--pyhdfd78af_0.json @@ -0,0 +1,113 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.11": "/usr/local/bin/2to3-3.11", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "djpeg": "/usr/local/bin/djpeg", + "f2py": "/usr/local/bin/f2py", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "idle3": "/usr/local/bin/idle3", + "idle3.11": "/usr/local/bin/idle3.11", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "primerForge": "/usr/local/bin/primerForge", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.11": "/usr/local/bin/pydoc3.11", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.11": "/usr/local/bin/python3.11", + "python3.11-config": "/usr/local/bin/python3.11-config", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt", + "env-execute": "/usr/local/env-execute" +} \ No newline at end of file