diff --git a/counts.json b/counts.json index 675a3be..e609d4b 100644 --- a/counts.json +++ b/counts.json @@ -2326,16 +2326,16 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3786, + "2to3": 3790, "2to3-3.10": 828, "2to3-3.11": 279, - "2to3-3.12": 276, + "2to3-3.12": 279, "2to3-3.4": 6, "2to3-3.5": 103, "2to3-3.6": 343, "2to3-3.7": 383, "2to3-3.8": 577, - "2to3-3.9": 658, + "2to3-3.9": 659, "3EdgeTests": 1, "3_1_filter_mapQ_for_sam.pl": 1, "3seq": 1, @@ -2652,6 +2652,7 @@ "ChIPAssoc": 1, "Chainer": 2, "CheckDll.exe": 1, + "Cherry_single": 1, "Chorus2": 1, "ChorusDraftPrebuild": 1, "ChorusGUI": 1, @@ -3816,6 +3817,9 @@ "PgRC": 1, "PgSAgen": 2, "PgSAtest": 2, + "PhaGCN_single": 1, + "PhaMer_single": 1, + "PhaTYP_single": 1, "PhenotypeSubtree": 1, "PhenotypesToGenes": 1, "Phi": 3, @@ -3948,7 +3952,7 @@ "QueueingSystem.dll": 1, "QuickDeconvolution": 1, "QuickSNP.py": 1, - "R": 4680, + "R": 4682, "R-scape": 2, "R-scape-sim": 2, "R-scape-sim-nobps": 2, @@ -4285,7 +4289,7 @@ "Rprof": 1, "Rsample": 5, "Rsample-smp": 5, - "Rscript": 4681, + "Rscript": 4683, "RunTHetA.py": 1, "SAGE": 1, "SAMMPileUpReader.py": 1, @@ -5103,7 +5107,7 @@ "acdvalid": 27, "ace.pl": 56, "ace2contig": 2, - "ace2sam": 531, + "ace2sam": 532, "aci": 1, "aclocal.bak": 11, "acmbuild": 1, @@ -5202,7 +5206,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4600, + "adig": 4605, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5319,7 +5323,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4600, + "ahost": 4605, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -5598,7 +5602,7 @@ "annembed": 1, "annonars": 1, "annosine2": 1, - "annot-tsv": 53, + "annot-tsv": 54, "annot_blast_btop2.pl": 7, "annotate": 257, "annotate-partitions.py": 7, @@ -6130,7 +6134,7 @@ "autometa-taxonomy-majority-vote": 2, "autometa-unclustered-recruitment": 2, "autometa-update-databases": 2, - "autopoint": 5316, + "autopoint": 5318, "autoreconf.bak": 10, "autoscan.bak": 10, "autoupdate.bak": 10, @@ -6748,7 +6752,7 @@ "bgenFileInfo": 1, "bgenix": 1, "bgreat": 4, - "bgzip": 729, + "bgzip": 730, "bgzip.pl": 4, "bgziptabix": 32, "bialign.py": 1, @@ -6939,7 +6943,7 @@ "blast2lca": 1, "blast2rma": 1, "blast2sam": 1, - "blast2sam.pl": 531, + "blast2sam.pl": 532, "blastMapAnalyzer2.pl": 1, "blastMining": 1, "blastMining_lca.sh": 1, @@ -7063,7 +7067,7 @@ "bowtie2-inspect-l": 115, "bowtie2-inspect-s": 115, "bowtie2_stuff.py": 2, - "bowtie2sam.pl": 531, + "bowtie2sam.pl": 532, "bowtie_PE_separate_then_join.pl": 1, "bowtie_mapper.sh": 1, "box": 1, @@ -7334,7 +7338,7 @@ "bundlelinks": 2, "bundler": 19, "bunwarpj": 4, - "bunzip2": 6772, + "bunzip2": 6778, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7388,16 +7392,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6772, - "bzcmp": 6772, - "bzdiff": 6772, - "bzegrep": 6772, - "bzfgrep": 6772, - "bzgrep": 6772, - "bzip2": 6772, - "bzip2recover": 6772, - "bzless": 6772, - "bzmore": 6772, + "bzcat": 6778, + "bzcmp": 6778, + "bzdiff": 6778, + "bzegrep": 6778, + "bzfgrep": 6778, + "bzgrep": 6778, + "bzip2": 6778, + "bzip2recover": 6778, + "bzless": 6778, + "bzmore": 6778, "c++": 5, "c++filt": 8, "c-index-test": 8, @@ -7414,7 +7418,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 7917, + "c_rehash": 7923, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7490,7 +7494,7 @@ "cagecatProcess.py": 1, "cagee": 1, "cai": 28, - "cairo-trace": 5170, + "cairo-trace": 5172, "cairosvg": 6, "cal": 13, "calD": 1, @@ -7594,7 +7598,7 @@ "capnpc-capnp": 58, "capnpc-cython": 1, "capri_eval": 1, - "captoinfo": 7849, + "captoinfo": 7855, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -7931,7 +7935,7 @@ "checkqc-ws": 1, "checkstrand.sh": 1, "checksub": 1, - "checksum-profile": 2, + "checksum-profile": 3, "checktrans": 27, "checkv": 3, "cheetah": 10, @@ -8042,7 +8046,7 @@ "cit2pmid": 38, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5833, + "cjpeg": 5836, "ckeygen": 1, "cksum": 85, "claMLST": 1, @@ -8153,7 +8157,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7849, + "clear": 7855, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -8529,7 +8533,7 @@ "compileSpliceCands": 13, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5891, + "compile_et": 5896, "compiled_table.py": 1, "compleasm": 1, "complementBed": 280, @@ -8706,11 +8710,11 @@ "conv-template": 17, "convbkmk": 1, "convert": 77, - "convert-caffe2-to-onnx": 50, + "convert-caffe2-to-onnx": 52, "convert-ccds-to-bed": 3, "convert-fasta-to-v2.pl": 3, "convert-mirdeep2-fasta.py": 1, - "convert-onnx-to-caffe2": 50, + "convert-onnx-to-caffe2": 52, "convert-readcount-file.py": 1, "convert-regions": 2, "convert-sam-for-rsem": 1, @@ -8877,6 +8881,7 @@ "corsid_a": 1, "cortex_con_31": 1, "cortexpy": 2, + "cosigt": 1, "count-aligned-reads": 3, "count-kmers": 4, "count-median.py": 7, @@ -9140,7 +9145,7 @@ "cstacks": 1, "cstag": 1, "cstranslate": 4, - "csv-import": 70, + "csv-import": 71, "csv2kml": 1, "csv2rdf": 34, "csv2tsv": 1, @@ -9193,8 +9198,8 @@ "curate_spatial_data": 1, "curate_universe": 1, "curesim": 2, - "curl": 5146, - "curl-config": 5995, + "curl": 5148, + "curl-config": 6000, "curlywhirly": 1, "curve_keygen": 72, "cusp": 27, @@ -9348,7 +9353,7 @@ "dataset.py": 2, "dataset_manager.py": 1, "datasets": 3, - "datasets-cli": 3, + "datasets-cli": 4, "datashader": 2, "datatool": 349, "datavzrd": 2, @@ -9645,7 +9650,7 @@ "depth_calc.py": 1, "depth_estim_from_vcf.sh": 1, "depythontex": 1, - "derb": 5909, + "derb": 5913, "derep_stuff.py": 2, "deripcal": 1, "derna": 1, @@ -9689,6 +9694,7 @@ "determine_multiplicity.py": 1, "detrend.py": 1, "deva": 1, + "devider": 1, "dex2DB": 1, "dexar": 1, "dexqv": 1, @@ -9814,7 +9820,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5833, + "djpeg": 5836, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -10334,11 +10340,11 @@ "elandresult2bed": 1, "elastic-blast": 1, "elasticluster": 1, - "elasticurl": 62, - "elasticurl_cpp": 62, - "elastipubsub": 62, - "elastipubsub5": 51, - "elastishadow": 2, + "elasticurl": 63, + "elasticurl_cpp": 63, + "elastipubsub": 63, + "elastipubsub5": 52, + "elastishadow": 3, "elb-cost.py": 1, "elbadmin": 29, "elector": 1, @@ -10434,7 +10440,7 @@ "environment.yml": 1, "envpath": 3, "envset.cmd": 1, - "envsubst": 5316, + "envsubst": 5318, "eoulsan.sh": 1, "epa-ng": 4, "epestfind": 27, @@ -10656,7 +10662,7 @@ "exporTPP.pl": 2, "export-itol.pl": 1, "export2graphlan.py": 1, - "export2sam.pl": 531, + "export2sam.pl": 532, "exportTools.sh": 1, "export_mitochondrial_contigs.py": 1, "export_norm_data": 1, @@ -10823,16 +10829,16 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 2142, + "f2py": 2145, "f2py2": 136, "f2py2.7": 136, - "f2py3": 1596, + "f2py3": 1597, "f2py3.10": 446, "f2py3.11": 110, "f2py3.6": 127, "f2py3.7": 257, "f2py3.8": 246, - "f2py3.9": 410, + "f2py3.9": 411, "f4ratio": 2, "f5c": 1, "f77": 1, @@ -10950,7 +10956,7 @@ "fasta-most": 13, "fasta-nr": 4, "fasta-re-match": 8, - "fasta-sanitize.pl": 329, + "fasta-sanitize.pl": 330, "fasta-shuffle-letters": 13, "fasta-splitter": 1, "fasta-strip-identifier": 2, @@ -11286,19 +11292,19 @@ "fasxl": 2, "fathom": 2, "favites_lite.py": 1, - "fax2ps": 5306, - "fax2tiff": 5306, + "fax2ps": 5309, + "fax2tiff": 5309, "fba": 1, "fc": 1, - "fc-cache": 5374, - "fc-cat": 5374, - "fc-conflist": 4891, - "fc-list": 5374, - "fc-match": 5374, - "fc-pattern": 5374, - "fc-query": 5374, - "fc-scan": 5374, - "fc-validate": 5374, + "fc-cache": 5376, + "fc-cat": 5376, + "fc-conflist": 4893, + "fc-list": 5376, + "fc-match": 5376, + "fc-pattern": 5376, + "fc-query": 5376, + "fc-scan": 5376, + "fc-validate": 5376, "fc_actg_coordinate": 1, "fc_calc_cutoff": 1, "fc_consensus": 1, @@ -11968,7 +11974,7 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5897, + "freetype-config": 5900, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -11982,7 +11988,7 @@ "frg2fastq": 2, "frg2ta": 2, "frgs2clones": 3, - "fribidi": 4038, + "fribidi": 4040, "frictionless": 1, "frm_admin": 1, "frm_purged": 1, @@ -12329,6 +12335,7 @@ "gaeval": 1, "gaf_filter.py": 1, "gaf_filter2.py": 1, + "gafpack": 1, "gainLoss": 1, "gal2adf.pl": 1, "galah": 1, @@ -12580,17 +12587,17 @@ "genbank_to": 1, "genblastG": 1, "genbox": 1, - "genbrk": 5909, - "gencfu": 5909, + "genbrk": 5913, + "gencfu": 5913, "genclust": 1, - "gencnval": 5909, + "gencnval": 5913, "gencode_extract_relevant_gtf_exons.pl": 1, "gencode_singleton_unit_test": 5, "genconf": 1, "gencore": 1, "gencove": 1, "gendb": 13, - "gendict": 5909, + "gendict": 5913, "gendist": 10, "gene2protein.db3": 2, "gene2range": 215, @@ -12757,7 +12764,7 @@ "genotyphi.py": 1, "genpcz": 2, "genpept2gsi.pl": 2, - "genrb": 5909, + "genrb": 5913, "genreflex": 3, "genremdinputs.py": 6, "genrestr": 4, @@ -12912,7 +12919,7 @@ "get_general_stats.pl": 1, "get_genes_table.pl": 3, "get_genomes_info.py": 1, - "get_gprof": 12, + "get_gprof": 13, "get_homologues-est.pl": 1, "get_homologues.pl": 1, "get_homology.pl": 1, @@ -12926,7 +12933,7 @@ "get_mirdeep2_precursors.pl": 1, "get_mnv": 1, "get_mpilup_from_id_list.py": 2, - "get_objgraph": 62, + "get_objgraph": 63, "get_objgraph.py": 1, "get_obsolete_term_id_vs_def_in_go.pl": 1, "get_obsolete_term_id_vs_name_in_go.pl": 1, @@ -13036,9 +13043,9 @@ "getscu": 1, "getsize": 13, "getsnvfreq_by_interval": 1, - "gettext": 5316, - "gettext.sh": 5316, - "gettextize": 5316, + "gettext": 5318, + "gettext.sh": 5318, + "gettextize": 5318, "getu0.X86_64.LINUX": 1, "getu0.X86_64.SUNOS": 1, "getuniqgenomealign": 1, @@ -13118,7 +13125,7 @@ "gffutils-cli": 34, "gfinisher": 1, "gflags2man.py": 3, - "gflags_completions.sh": 79, + "gflags_completions.sh": 80, "gfmix": 1, "gfmix.yaml": 1, "gfmix_mammal.smk": 1, @@ -13529,13 +13536,13 @@ "grouperThreads2.32": 1, "groups": 85, "grow-readbank": 2, - "grpc_cpp_plugin": 161, - "grpc_csharp_plugin": 161, - "grpc_node_plugin": 161, - "grpc_objective_c_plugin": 161, - "grpc_php_plugin": 161, - "grpc_python_plugin": 161, - "grpc_ruby_plugin": 161, + "grpc_cpp_plugin": 162, + "grpc_csharp_plugin": 162, + "grpc_node_plugin": 162, + "grpc_objective_c_plugin": 162, + "grpc_php_plugin": 162, + "grpc_python_plugin": 162, + "grpc_ruby_plugin": 162, "gs": 106, "gsbj": 106, "gscat": 2, @@ -13549,9 +13556,9 @@ "gsf": 1, "gsf-office-thumbnailer": 1, "gsf-vba-dump": 1, - "gsl-config": 4579, - "gsl-histogram": 4579, - "gsl-randist": 4579, + "gsl-config": 4581, + "gsl-histogram": 4581, + "gsl-randist": 4581, "gslj": 106, "gslp": 106, "gsmap": 1, @@ -13563,7 +13570,7 @@ "gsnapl.sse42": 12, "gsnd": 106, "gsort": 5, - "gss-client": 5891, + "gss-client": 5896, "gss-server": 2, "gst-completion-helper": 1, "gst-device-monitor-1.0": 240, @@ -13923,7 +13930,7 @@ "haplogrep": 1, "haplogrep.jar": 1, "haplomap": 1, - "haplotag_bam": 1, + "haplotag_bam": 2, "haplotyper.Naive.pl": 1, "haplotyper.pl": 1, "haploview": 1, @@ -13965,10 +13972,10 @@ "haystack_run_test": 1, "haystack_tf_activity_plane": 1, "hb-info": 312, - "hb-ot-shape-closure": 5110, - "hb-shape": 5110, - "hb-subset": 4674, - "hb-view": 5067, + "hb-ot-shape-closure": 5112, + "hb-shape": 5112, + "hb-subset": 4676, + "hb-view": 5069, "hbvblast.sh": 1, "hca-matrix-downloader": 1, "hca-mtx-to-10x": 1, @@ -14283,7 +14290,7 @@ "htseq-count": 22, "htseq-count-barcodes": 14, "htseq-qa": 22, - "htsfile": 725, + "htsfile": 726, "htsget": 2, "htsinfer": 1, "httpcfg": 16, @@ -14295,7 +14302,7 @@ "huge-merge.pl": 2, "huge-sort.pl": 2, "huge-split.pl": 2, - "huggingface-cli": 3, + "huggingface-cli": 4, "hulk": 1, "humanfriendly": 114, "humann": 1, @@ -14346,21 +14353,21 @@ "humann_unpack_pathways": 1, "humid": 1, "hv-pipeline.py": 1, - "hwloc-annotate": 83, + "hwloc-annotate": 85, "hwloc-assembler": 2, "hwloc-assembler-remote": 2, - "hwloc-bind": 83, - "hwloc-calc": 83, - "hwloc-compress-dir": 83, - "hwloc-diff": 83, + "hwloc-bind": 85, + "hwloc-calc": 85, + "hwloc-compress-dir": 85, + "hwloc-diff": 85, "hwloc-distances": 2, - "hwloc-distrib": 83, - "hwloc-gather-cpuid": 81, - "hwloc-gather-topology": 83, - "hwloc-info": 83, - "hwloc-ls": 83, - "hwloc-patch": 83, - "hwloc-ps": 83, + "hwloc-distrib": 85, + "hwloc-gather-cpuid": 83, + "hwloc-gather-topology": 85, + "hwloc-info": 85, + "hwloc-ls": 85, + "hwloc-patch": 85, + "hwloc-ps": 85, "hyb_analyze": 1, "hyb_check": 1, "hyb_eval": 1, @@ -14428,9 +14435,9 @@ "ichar": 1, "icon-font-to-png": 2, "iconv": 5462, - "icu-config": 5909, - "icuexportdata": 2122, - "icuinfo": 5909, + "icu-config": 5913, + "icuexportdata": 2126, + "icuinfo": 5913, "id": 85, "id_conserved_regions.pl": 1, "idba": 10, @@ -14463,17 +14470,17 @@ "idfetch": 1, "idiag-socket-details": 14, "idle": 334, - "idle3": 3455, + "idle3": 3459, "idle3.10": 828, "idle3.11": 279, - "idle3.12": 276, + "idle3.12": 279, "idle3.13": 2, "idle3.4": 6, "idle3.5": 103, "idle3.6": 343, "idle3.7": 383, "idle3.8": 577, - "idle3.9": 658, + "idle3.9": 659, "idlj": 117, "idmatrix.sh": 31, "idn": 31, @@ -14687,11 +14694,11 @@ "infoalign": 27, "infoassembly": 27, "infobase": 27, - "infocmp": 7849, + "infocmp": 7855, "inforesidue": 27, "informant.py": 1, "infoseq": 27, - "infotocap": 7849, + "infotocap": 7855, "ini2xml": 38, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -14784,7 +14791,7 @@ "interop_plot_qscore_histogram": 4, "interop_plot_sample_qc": 4, "interop_summary": 4, - "interpolate_sam.pl": 531, + "interpolate_sam.pl": 532, "interprophet.rb": 1, "interproscan.sh": 1, "intersect": 5, @@ -14927,7 +14934,7 @@ "isql": 1, "iss": 2, "isutf8": 3, - "isympy": 38, + "isympy": 39, "it.cpython-36m-x86_64-linux-gnu.so": 1, "it.so": 1, "iterate": 2, @@ -15108,8 +15115,8 @@ "jp.py": 104, "jpackage": 134, "jpeg2hdf": 126, - "jpegtran": 5833, - "jpgicc": 1041, + "jpegtran": 5836, + "jpgicc": 1042, "jpredapi": 1, "jps": 554, "jq": 309, @@ -15131,7 +15138,7 @@ "jsonpath.py": 1, "jsonpath_ng": 1, "jsonpointer": 12, - "jsonschema": 224, + "jsonschema": 225, "jstack": 554, "jstat": 554, "jstatd": 554, @@ -15185,14 +15192,14 @@ "just-top-hits": 18, "just_blast_test.pl": 1, "jwebserver": 50, - "k5srvutil": 5891, - "k8": 169, + "k5srvutil": 5896, + "k8": 170, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5891, + "kadmin": 5896, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -15287,7 +15294,7 @@ "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, "kdbmeta.3.1.1": 1, - "kdestroy": 5891, + "kdestroy": 5896, "kea-config": 38, "keep-header": 1, "keep-ribo-periodic": 1, @@ -15298,7 +15305,7 @@ "keggcharter.py": 1, "keggpathway_map.py": 1, "keyFreq": 1, - "keyctl": 2520, + "keyctl": 2525, "keygen": 1, "keyring": 10, "keytool": 554, @@ -15329,7 +15336,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5891, + "kinit": 5896, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 56, @@ -15342,7 +15349,7 @@ "kitsch": 10, "kitsune": 1, "kleborate": 1, - "klist": 5891, + "klist": 5896, "kma": 19, "kma_index": 19, "kma_shm": 19, @@ -15432,7 +15439,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5891, + "kpasswd": 5896, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -15479,7 +15486,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5891, + "krb5-config": 5896, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -15495,9 +15502,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5891, + "ksu": 5896, "ksw": 1, - "kswitch": 5891, + "kswitch": 5896, "ktClassifyBLAST": 17, "ktClassifyHits": 13, "ktGetContigMagnitudes": 17, @@ -15528,12 +15535,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5891, + "ktutil": 5896, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5891, + "kvno": 5896, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15691,8 +15698,8 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4205, - "libdeflate-gzip": 4205, + "libdeflate-gunzip": 4209, + "libdeflate-gzip": 4209, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, @@ -15702,8 +15709,8 @@ "liblist.pl": 1, "liblist.pl.bak": 1, "libnetcfg": 1740, - "libpng-config": 5953, - "libpng16-config": 5953, + "libpng-config": 5956, + "libpng16-config": 5956, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15763,7 +15770,7 @@ "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 1041, + "linkicc": 1042, "linknets": 2, "links2sql.pl": 7, "linksBed": 280, @@ -15939,11 +15946,11 @@ "locus2bed": 1, "locuspocus": 1, "loeb-2.0.sh": 1, - "lofreq": 9, - "lofreq2_call_pparallel.py": 9, - "lofreq2_indel_ovlp.py": 8, - "lofreq2_somatic.py": 9, - "lofreq2_vcfplot.py": 8, + "lofreq": 10, + "lofreq2_call_pparallel.py": 10, + "lofreq2_indel_ovlp.py": 9, + "lofreq2_somatic.py": 10, + "lofreq2_vcfplot.py": 9, "log-pubmed": 1, "log.py": 1, "log4cpp-config": 1, @@ -15971,6 +15978,7 @@ "long_fastx": 1, "long_seq_tm_test": 3, "long_spanning_reads": 3, + "longcallR_nn": 1, "longest_path": 1, "longphase": 2, "longread.awk": 1, @@ -16039,8 +16047,8 @@ "lsmem": 13, "lsns": 13, "lss3": 29, - "lstopo": 83, - "lstopo-no-graphics": 83, + "lstopo": 85, + "lstopo-no-graphics": 85, "ltqnorm.pl": 1, "ltqnorm.pl.bak": 1, "ltr_finder": 3, @@ -16078,21 +16086,21 @@ "lwp-request": 200, "lyner": 1, "lz-ani": 1, - "lz4": 3539, + "lz4": 3540, "lz4_decompress": 2, - "lz4c": 3538, - "lz4cat": 3538, - "lzcat": 7674, - "lzcmp": 7674, - "lzdiff": 7674, - "lzegrep": 7674, - "lzfgrep": 7674, - "lzgrep": 7674, - "lzless": 7674, - "lzma": 7674, - "lzmadec": 7674, - "lzmainfo": 7674, - "lzmore": 7674, + "lz4c": 3539, + "lz4cat": 3539, + "lzcat": 7680, + "lzcmp": 7680, + "lzdiff": 7680, + "lzegrep": 7680, + "lzfgrep": 7680, + "lzgrep": 7680, + "lzless": 7680, + "lzma": 7680, + "lzmadec": 7680, + "lzmainfo": 7680, + "lzmore": 7680, "lzop_build_offset_table.py": 60, "m-party": 1, "m-tx": 1, @@ -16253,7 +16261,7 @@ "main_html_generator.py": 1, "makblk.pl": 4, "makdbs": 4, - "make": 4175, + "make": 4177, "make-barcodes.awk": 1, "make-cluster.R": 1, "make-conf": 2, @@ -16408,7 +16416,7 @@ "makechimeras.sh": 31, "makeclusterdb": 5, "makecontaminatedgenomes.sh": 31, - "makeconv": 5909, + "makeconv": 5913, "makedtx": 1, "makefasta.awk": 1, "makegeo": 38, @@ -16530,8 +16538,8 @@ "mapula": 1, "mapview": 46, "mapviewToBed.pl": 1, - "maq2sam-long": 531, - "maq2sam-short": 531, + "maq2sam-long": 532, + "maq2sam-short": 532, "mareymaps_untrimmed.smk": 1, "marge": 1, "margin_cons": 2, @@ -16776,9 +16784,9 @@ "md5cp.2.11.0": 10, "md5cp.3": 2, "md5cp.3.0.0": 2, - "md5fa": 531, + "md5fa": 532, "md5sum": 85, - "md5sum-lite": 531, + "md5sum-lite": 532, "md_coords": 12, "mdasim": 1, "mdassembler": 16, @@ -17293,7 +17301,7 @@ "minigzip": 4, "minimap": 1, "minimap-lite": 1, - "minimap2": 172, + "minimap2": 173, "minimap2-coverage": 2, "minimap2.py": 26, "minimap2_genome": 1, @@ -17605,9 +17613,9 @@ "mprof-report": 16, "mptopdf": 1, "mpxstats": 1, - "mqtt5_app": 51, - "mqtt5_canary": 51, - "mqtt5canary": 51, + "mqtt5_app": 52, + "mqtt5_canary": 52, + "mqtt5canary": 52, "mquad": 1, "mrcfile-header": 3, "mrcfile-validate": 3, @@ -17649,24 +17657,24 @@ "mseqtools": 1, "msformatter": 1, "msfragger": 2, - "msgattrib": 5316, - "msgcat": 5316, - "msgcmp": 5316, - "msgcomm": 5316, - "msgconv": 5316, - "msgen": 5316, - "msgexec": 5316, + "msgattrib": 5318, + "msgcat": 5318, + "msgcmp": 5318, + "msgcomm": 5318, + "msgconv": 5318, + "msgen": 5318, + "msgexec": 5318, "msgf2pin": 1, "msgf_plus": 3, - "msgfilter": 5316, - "msgfmt": 5316, + "msgfilter": 5318, + "msgfmt": 5318, "msgfplus_search.rb": 1, - "msggrep": 5316, - "msginit": 5316, - "msgmerge": 5316, + "msggrep": 5318, + "msginit": 5318, + "msgmerge": 5318, "msgserv": 1, - "msgunfmt": 5316, - "msguniq": 5316, + "msgunfmt": 5318, + "msguniq": 5318, "msi": 1, "msi_cluster2reads": 1, "msi_clustr2map.pl": 1, @@ -17970,9 +17978,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 7142, + "ncurses6-config": 7148, "ncursesw5-config": 703, - "ncursesw6-config": 7143, + "ncursesw6-config": 7149, "ndg_httpclient": 2, "ndisasm": 1, "ndmetis": 60, @@ -18067,7 +18075,7 @@ "nf-test": 1, "nfe-umbrella-slice": 6, "ngd": 12, - "ngettext": 5316, + "ngettext": 5318, "ngg_barabasi_albert": 2, "ngg_barbell": 2, "ngg_complete": 2, @@ -18077,9 +18085,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4547, - "nghttpd": 4547, - "nghttpx": 4547, + "nghttp": 4552, + "nghttpd": 4552, + "nghttpx": 4552, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -18222,7 +18230,7 @@ "normalize_multicov.pl": 1, "normalize_oneD.R": 1, "normalize_table.py": 1, - "normalizer": 500, + "normalizer": 503, "normandcorrectwrapper.sh": 1, "nose2": 1, "nose2-2.7": 1, @@ -18240,7 +18248,7 @@ "noveliso.py": 1, "novo2maq": 1, "novo2paf": 2, - "novo2sam.pl": 532, + "novo2sam.pl": 533, "novoBreak": 1, "novoalign": 2, "novoalign-license-register": 2, @@ -18330,7 +18338,7 @@ "number-lines": 1, "numfmt": 85, "numlines": 1, - "numpy-config": 56, + "numpy-config": 58, "nunit-console": 10, "nunit-console2": 10, "nunit-console4": 10, @@ -18615,12 +18623,12 @@ "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 7917, + "openssl": 7923, "opentargets_validator": 1, "operation.py": 1, - "opj_compress": 682, - "opj_decompress": 682, - "opj_dump": 682, + "opj_compress": 683, + "opj_decompress": 683, + "opj_dump": 683, "opl2ofm": 1, "opsin": 1, "opt": 6, @@ -18639,11 +18647,11 @@ "orator": 1, "orbd": 117, "orc-bugreport": 14, - "orc-contents": 75, - "orc-memory": 70, - "orc-metadata": 75, - "orc-scan": 70, - "orc-statistics": 75, + "orc-contents": 76, + "orc-memory": 71, + "orc-metadata": 76, + "orc-scan": 71, + "orc-statistics": 76, "orca-server": 1, "orcc": 14, "order.smk": 1, @@ -18839,7 +18847,7 @@ "paf_to_barplot.py": 1, "paf_to_dotplot.py": 1, "paf_to_heatmap.py": 1, - "paftools.js": 168, + "paftools.js": 169, "pager": 1, "painter.py": 20, "pair2tb": 1, @@ -18860,7 +18868,7 @@ "pairtools": 3, "pairwise_comparison": 1, "pal2nal.pl": 9, - "pal2rgb": 5306, + "pal2rgb": 5309, "pal_finder": 1, "paladin": 2, "palindrome": 27, @@ -18897,7 +18905,7 @@ "pandaseq-diff": 1, "pandaseq-hang": 1, "pandaxs": 1, - "pandoc": 341, + "pandoc": 342, "pandoc-citeproc": 63, "pandoc-lua": 16, "pandoc-server": 44, @@ -18909,10 +18917,10 @@ "panfeed-plot": 1, "pangenome_variants_to_treeWAS.pl": 1, "pango-collapse": 1, - "pango-list": 4035, + "pango-list": 4037, "pango-querymodules": 10, - "pango-segmentation": 2860, - "pango-view": 4838, + "pango-segmentation": 2862, + "pango-view": 4840, "pangoLEARN": 1, "pango_designation": 1, "pangolearn.smk": 1, @@ -19165,11 +19173,11 @@ "pcoaPlot.py": 2, "pcor": 1, "pcre-config": 4952, - "pcre2-config": 3759, - "pcre2_jit_test": 3683, - "pcre2grep": 3759, + "pcre2-config": 3761, + "pcre2_jit_test": 3685, + "pcre2grep": 3761, "pcre2posix_test": 113, - "pcre2test": 3759, + "pcre2test": 3761, "pcregrep": 4952, "pcretest": 4952, "pct2rgb": 1, @@ -19485,6 +19493,7 @@ "pgv-simpleplot": 2, "ph5diff": 3, "phables": 1, + "phabox": 1, "phame": 1, "phandango_mapper": 2, "phanotate.py": 3, @@ -19784,10 +19793,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3789, + "pip": 3793, "pip2": 1, "pip2.7": 1, - "pip3": 2712, + "pip3": 2716, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 3, @@ -19940,7 +19949,7 @@ "pkfix-helper": 1, "pkg-config": 78, "pkg-config.bin": 78, - "pkgdata": 5909, + "pkgdata": 5913, "pkginfo": 10, "pkill": 1, "pktogf": 1, @@ -19984,8 +19993,8 @@ "plip": 1, "plncpro": 1, "plncpro_format_ff.sh": 1, - "plot-ampliconstats": 335, - "plot-bamstats": 531, + "plot-ampliconstats": 336, + "plot-bamstats": 532, "plot-bmprobs": 4, "plot-cnv": 1, "plot-insert-size-distribution": 2, @@ -20147,9 +20156,9 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 5953, + "png-fix-itxt": 5956, "pngcp": 89, - "pngfix": 5953, + "pngfix": 5956, "pngtogd": 243, "pngtogd2": 243, "pnps-gen": 1, @@ -20270,8 +20279,8 @@ "ppi2html": 2, "pplacer": 22, "ppltotf": 1, - "ppm2tiff": 5306, - "pprodigal": 1, + "ppm2tiff": 5309, + "pprodigal": 2, "pprof": 2, "pprof-symbolize": 1, "ppserver": 7, @@ -20481,7 +20490,7 @@ "processhi-c.sh": 30, "processspeed.sh": 31, "proda": 1, - "prodigal": 120, + "prodigal": 121, "prodigal-gv": 6, "prodigal.py": 1, "prodigal_stuff.py": 2, @@ -20614,7 +20623,7 @@ "protmapper": 1, "protobuf-net.dll": 2, "protobuf-net.xml": 2, - "protoc": 282, + "protoc": 284, "protoc-23.1.0": 1, "protoc-23.3.0": 4, "protoc-23.4.0": 6, @@ -20622,7 +20631,7 @@ "protoc-24.4.0": 20, "protoc-25.1.0": 5, "protoc-25.2.0": 2, - "protoc-25.3.0": 29, + "protoc-25.3.0": 30, "protoc-27.5.0": 1, "protoc-gen-grpclib_python": 1, "protoc-gen-mypy": 1, @@ -20699,7 +20708,7 @@ "psiblast": 349, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 1041, + "psicc": 1042, "psiclass": 1, "psiphi": 27, "psirc": 1, @@ -20712,7 +20721,7 @@ "psl2bed-float128": 15, "psl2bed-megarow": 15, "psl2bed-typical": 15, - "psl2sam.pl": 531, + "psl2sam.pl": 532, "psl2starch": 15, "psl2starch-float128": 15, "psl2starch-megarow": 15, @@ -20939,18 +20948,18 @@ "pydemult": 1, "pydicom": 1, "pydna_repeatfinder": 1, - "pydoc": 3788, - "pydoc3": 3455, + "pydoc": 3792, + "pydoc3": 3459, "pydoc3.10": 828, "pydoc3.11": 279, - "pydoc3.12": 276, + "pydoc3.12": 279, "pydoc3.13": 2, "pydoc3.4": 6, "pydoc3.5": 103, "pydoc3.6": 343, "pydoc3.7": 383, "pydoc3.8": 577, - "pydoc3.9": 658, + "pydoc3.9": 659, "pydownsampler": 1, "pyega3": 1, "pyemojify": 1, @@ -21071,7 +21080,7 @@ "pytest": 151, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3789, + "python": 3793, "python-argcomplete-check-easy-install-script": 347, "python-argcomplete-tcsh": 191, "python-build": 2, @@ -21082,15 +21091,15 @@ "python2.5-config": 1, "python2.7": 333, "python2.7-config": 316, - "python3": 3456, - "python3-config": 3455, - "python3.1": 1385, + "python3": 3460, + "python3-config": 3459, + "python3.1": 1388, "python3.10": 828, "python3.10-config": 828, "python3.11": 279, "python3.11-config": 279, - "python3.12": 276, - "python3.12-config": 276, + "python3.12": 279, + "python3.12-config": 279, "python3.13": 2, "python3.13-config": 2, "python3.4": 6, @@ -21111,8 +21120,8 @@ "python3.7m-config": 383, "python3.8": 577, "python3.8-config": 577, - "python3.9": 658, - "python3.9-config": 658, + "python3.9": 659, + "python3.9-config": 659, "pythonsh": 2, "pythontex": 1, "pytleap": 6, @@ -21435,7 +21444,7 @@ "ratt": 2, "rav1e": 10, "raven": 4, - "raw2tiff": 5306, + "raw2tiff": 5309, "raw_n50": 10, "raw_n50.o": 10, "raw_vcf_parse.py": 1, @@ -21503,7 +21512,7 @@ "rdfgraphisomorphism": 34, "rdfpipe": 34, "rdfs2dot": 34, - "rdjpgcom": 5833, + "rdjpgcom": 5836, "rdkit2fps": 1, "rdma_client": 25, "rdma_server": 25, @@ -21602,7 +21611,7 @@ "recgraph": 1, "reciprocal_blast_local": 1, "reciprocal_blast_local.py": 1, - "recode-sr-latin": 5316, + "recode-sr-latin": 5318, "recode_dir": 1, "recode_dir_legacy": 1, "recoder": 27, @@ -21968,7 +21977,7 @@ "rescue_fusion.py": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7849, + "reset": 7855, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -22463,6 +22472,7 @@ "run_dbcan": 2, "run_dbcan.py": 1, "run_dbghaplo_pipeline": 1, + "run_devider_pipeline": 1, "run_difcover.sh": 1, "run_discoSnp++.sh": 1, "run_discoSnp++_ML.sh": 1, @@ -22695,7 +22705,7 @@ "sam2starch-float128": 15, "sam2starch-megarow": 15, "sam2starch-typical": 15, - "sam2vcf.pl": 531, + "sam2vcf.pl": 532, "samFLAGinfo.pl": 1, "samFilter": 1, "samMap.pl": 15, @@ -22755,8 +22765,8 @@ "samtoh5": 1, "samtom4": 1, "samtom5_dir": 1, - "samtools": 556, - "samtools.pl": 531, + "samtools": 557, + "samtools.pl": 532, "samtools_0.1.18": 3, "samtools_mpileup_to_var": 1, "samtoroc.sh": 31, @@ -22952,7 +22962,7 @@ "scitokens-test-access": 1, "scitokens-verify": 1, "sclass.X86_64.LINUX": 1, - "sclient": 5891, + "sclient": 5896, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -23059,7 +23069,7 @@ "sdsort": 2, "sdsplit": 2, "sdtether": 2, - "sdust": 156, + "sdust": 157, "se": 1, "sea": 2, "seagen": 3, @@ -23079,7 +23089,7 @@ "secondary2split.py": 1, "sectosupp": 1, "secutil": 16, - "sed": 3960, + "sed": 3962, "seealso": 27, "seedRand.py": 1, "seedme": 1, @@ -23180,7 +23190,7 @@ "seq2onehot": 1, "seq2profile.pl": 5, "seq2science": 2, - "seq_cache_populate.pl": 531, + "seq_cache_populate.pl": 532, "seq_count": 2, "seq_diff": 1, "seq_download.py": 2, @@ -23219,6 +23229,7 @@ "seqretsplit": 27, "seqscreen": 1, "seqsizzle": 1, + "seqspec": 1, "seqsplit": 4, "seqsrc_unit_test": 5, "seqstat": 4, @@ -23482,7 +23493,7 @@ "sim-cover2": 2, "sim-shotgun": 2, "sim4db": 3, - "sim_client": 5891, + "sim_client": 5896, "sim_reads": 10, "sim_reads.o": 10, "sim_reads_tran": 10, @@ -23780,7 +23791,7 @@ "snver-pool": 1, "soap": 2, "soap.coverage": 2, - "soap2sam.pl": 531, + "soap2sam.pl": 532, "soapcpp2": 1, "soapsplice": 1, "soapsuds": 16, @@ -24071,7 +24082,7 @@ "sqlformat": 9, "sqlite.pl": 1, "sqlite3": 2723, - "sqlite3_analyzer": 7239, + "sqlite3_analyzer": 7245, "sqlitebrowser": 1, "sqlmetal": 16, "sqlsharp": 16, @@ -24696,7 +24707,7 @@ "tab2krona.py": 1, "tab2mapper.pl": 1, "tab2ovls": 2, - "tabix": 729, + "tabix": 730, "tabix++": 24, "table2asn": 3, "table_add_column.py": 60, @@ -24706,7 +24717,7 @@ "tableschema": 1, "tablet": 1, "tabnum2id": 1, - "tabs": 7849, + "tabs": 7855, "tabulate": 142, "tabulate.py": 1, "tabulator": 1, @@ -24880,9 +24891,9 @@ "tbvcfreport": 1, "tcdemux": 1, "tcfinder": 1, - 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"run_devider_pipeline": "/usr/local/bin/run_devider_pipeline", + "sam2vcf.pl": "/usr/local/bin/sam2vcf.pl", + "samtools": "/usr/local/bin/samtools", + "samtools.pl": "/usr/local/bin/samtools.pl", + "sclient": "/usr/local/bin/sclient", + "sdust": "/usr/local/bin/sdust", + "seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl", + "sim_client": "/usr/local/bin/sim_client", + "soap2sam.pl": "/usr/local/bin/soap2sam.pl", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabix": "/usr/local/bin/tabix", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wgsim": "/usr/local/bin/wgsim", + "wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "write_contig_headers_vcf.py": "/usr/local/bin/write_contig_headers_vcf.py", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zoom2sam.pl": "/usr/local/bin/zoom2sam.pl", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/g/gafpack:0.1.0--h4349ce8_0.json b/quay.io/biocontainers/g/gafpack:0.1.0--h4349ce8_0.json new file mode 100644 index 0000000..d938880 --- /dev/null +++ b/quay.io/biocontainers/g/gafpack:0.1.0--h4349ce8_0.json @@ -0,0 +1,3 @@ +{ + "gafpack": "/usr/local/bin/gafpack" +} \ No newline at end of file diff --git a/quay.io/biocontainers/l/longcallr_nn:0.0.1--pyhdfd78af_0.json b/quay.io/biocontainers/l/longcallr_nn:0.0.1--pyhdfd78af_0.json new file mode 100644 index 0000000..55c64a9 --- /dev/null +++ b/quay.io/biocontainers/l/longcallr_nn:0.0.1--pyhdfd78af_0.json @@ -0,0 +1,176 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.9": "/usr/local/bin/2to3-3.9", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", + "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "f2py": "/usr/local/bin/f2py", + "f2py3": "/usr/local/bin/f2py3", + "f2py3.9": "/usr/local/bin/f2py3.9", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "freetype-config": "/usr/local/bin/freetype-config", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gss-client": "/usr/local/bin/gss-client", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.9": "/usr/local/bin/idle3.9", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "longcallR_nn": "/usr/local/bin/longcallR_nn", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "normalizer": "/usr/local/bin/normalizer", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "protoc": "/usr/local/bin/protoc", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.9": "/usr/local/bin/pydoc3.9", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.9": "/usr/local/bin/python3.9", + "python3.9-config": "/usr/local/bin/python3.9-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "toe": "/usr/local/bin/toe", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/phabox:2.0.0--pyh7e72e81_0.json b/quay.io/biocontainers/p/phabox:2.0.0--pyh7e72e81_0.json new file mode 100644 index 0000000..e1e062b --- /dev/null +++ b/quay.io/biocontainers/p/phabox:2.0.0--pyh7e72e81_0.json @@ -0,0 +1,186 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "Cherry_single": "/usr/local/bin/Cherry_single", + "PhaGCN_single": "/usr/local/bin/PhaGCN_single", + "PhaMer_single": "/usr/local/bin/PhaMer_single", + "PhaTYP_single": "/usr/local/bin/PhaTYP_single", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "checksum-profile": "/usr/local/bin/checksum-profile", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", + "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", + "csv-import": "/usr/local/bin/csv-import", + "curl-config": "/usr/local/bin/curl-config", + "datasets-cli": "/usr/local/bin/datasets-cli", + "derb": "/usr/local/bin/derb", + "elasticurl": "/usr/local/bin/elasticurl", + "elasticurl_cpp": "/usr/local/bin/elasticurl_cpp", + "elastipubsub": "/usr/local/bin/elastipubsub", + "elastipubsub5": "/usr/local/bin/elastipubsub5", + "elastishadow": "/usr/local/bin/elastishadow", + "f2py": "/usr/local/bin/f2py", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "get_gprof": "/usr/local/bin/get_gprof", + "get_objgraph": "/usr/local/bin/get_objgraph", + "gflags_completions.sh": "/usr/local/bin/gflags_completions.sh", + "grpc_cpp_plugin": "/usr/local/bin/grpc_cpp_plugin", + "grpc_csharp_plugin": "/usr/local/bin/grpc_csharp_plugin", + "grpc_node_plugin": "/usr/local/bin/grpc_node_plugin", + "grpc_objective_c_plugin": "/usr/local/bin/grpc_objective_c_plugin", + "grpc_php_plugin": "/usr/local/bin/grpc_php_plugin", + "grpc_python_plugin": "/usr/local/bin/grpc_python_plugin", + "grpc_ruby_plugin": "/usr/local/bin/grpc_ruby_plugin", + "gss-client": "/usr/local/bin/gss-client", + "huggingface-cli": "/usr/local/bin/huggingface-cli", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "isympy": "/usr/local/bin/isympy", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "makeconv": "/usr/local/bin/makeconv", + "mqtt5_app": "/usr/local/bin/mqtt5_app", + "mqtt5_canary": "/usr/local/bin/mqtt5_canary", + "mqtt5canary": "/usr/local/bin/mqtt5canary", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "normalizer": "/usr/local/bin/normalizer", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "orc-contents": "/usr/local/bin/orc-contents", + "orc-memory": "/usr/local/bin/orc-memory", + "orc-metadata": "/usr/local/bin/orc-metadata", + "orc-scan": "/usr/local/bin/orc-scan", + "orc-statistics": "/usr/local/bin/orc-statistics", + "phabox": "/usr/local/bin/phabox", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "pprodigal": "/usr/local/bin/pprodigal", + "prodigal": "/usr/local/bin/prodigal", + "protoc": "/usr/local/bin/protoc", + "protoc-25.3.0": "/usr/local/bin/protoc-25.3.0", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "timezone-dump": "/usr/local/bin/timezone-dump", + "toe": "/usr/local/bin/toe", + "torch_shm_manager": "/usr/local/bin/torch_shm_manager", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transformers-cli": "/usr/local/bin/transformers-cli", + "tset": "/usr/local/bin/tset", + "undill": "/usr/local/bin/undill", + "unlz4": "/usr/local/bin/unlz4", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xxh128sum": "/usr/local/bin/xxh128sum", + "xxh32sum": "/usr/local/bin/xxh32sum", + "xxh64sum": "/usr/local/bin/xxh64sum", + "xxhsum": "/usr/local/bin/xxhsum", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/r/r-archr:1.0.2--r41hdbdd923_0.json b/quay.io/biocontainers/r/r-archr:1.0.2--r41hdbdd923_0.json new file mode 100644 index 0000000..832072d --- /dev/null +++ b/quay.io/biocontainers/r/r-archr:1.0.2--r41hdbdd923_0.json @@ -0,0 +1,248 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "autopoint": "/usr/local/bin/autopoint", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "envsubst": "/usr/local/bin/envsubst", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": "/usr/local/bin/msgexec", + "msgfilter": "/usr/local/bin/msgfilter", + "msgfmt": "/usr/local/bin/msgfmt", + "msggrep": "/usr/local/bin/msggrep", + "msginit": "/usr/local/bin/msginit", + "msgmerge": "/usr/local/bin/msgmerge", + "msgunfmt": "/usr/local/bin/msgunfmt", + "msguniq": "/usr/local/bin/msguniq", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "ngettext": "/usr/local/bin/ngettext", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pandoc": "/usr/local/bin/pandoc", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2_jit_test": "/usr/local/bin/pcre2_jit_test", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xgettext": "/usr/local/bin/xgettext", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xmlwf": "/usr/local/bin/xmlwf", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/r/r-chromvarmotifs:0.2.0--r41hdfd78af_0.json b/quay.io/biocontainers/r/r-chromvarmotifs:0.2.0--r41hdfd78af_0.json new file mode 100644 index 0000000..94903ad --- /dev/null +++ b/quay.io/biocontainers/r/r-chromvarmotifs:0.2.0--r41hdfd78af_0.json @@ -0,0 +1,247 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "autopoint": "/usr/local/bin/autopoint", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "envsubst": "/usr/local/bin/envsubst", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": "/usr/local/bin/msgexec", + "msgfilter": "/usr/local/bin/msgfilter", + "msgfmt": "/usr/local/bin/msgfmt", + "msggrep": "/usr/local/bin/msggrep", + "msginit": "/usr/local/bin/msginit", + "msgmerge": "/usr/local/bin/msgmerge", + "msgunfmt": "/usr/local/bin/msgunfmt", + "msguniq": "/usr/local/bin/msguniq", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "ngettext": "/usr/local/bin/ngettext", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2_jit_test": "/usr/local/bin/pcre2_jit_test", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xgettext": "/usr/local/bin/xgettext", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xmlwf": "/usr/local/bin/xmlwf", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/seqspec:0.3.0--pyhdfd78af_0.json b/quay.io/biocontainers/s/seqspec:0.3.0--pyhdfd78af_0.json new file mode 100644 index 0000000..058ce48 --- /dev/null +++ b/quay.io/biocontainers/s/seqspec:0.3.0--pyhdfd78af_0.json @@ -0,0 +1,84 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "f2py": "/usr/local/bin/f2py", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jsonschema": "/usr/local/bin/jsonschema", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "normalizer": "/usr/local/bin/normalizer", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "reset": "/usr/local/bin/reset", + "seqspec": "/usr/local/bin/seqspec", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file