From 6e51f34caea5629a98b6981051f8d32d69db1e5b Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 19 Dec 2024 01:07:38 +0000 Subject: [PATCH] Automated deployment with updated cache 2024-12-19 --- counts.json | 1494 +++++++++-------- .../b/bindashtree:0.1.0--h3ab6199_0.json | 3 + ...r-alphamissenser:1.2.0--r44hdfd78af_0.json | 223 +++ ...onductor-anvilaz:1.0.0--r44hdfd78af_0.json | 223 +++ ...ductor-anvilbase:1.0.0--r44hdfd78af_0.json | 223 +++ ...nductor-anvilgcp:1.0.0--r44hdfd78af_0.json | 223 +++ ...uctor-assorthead:1.0.0--r44hdfd78af_0.json | 223 +++ ...h1121501frmavecs:1.0.0--r44hdfd78af_0.json | 222 +++ ...tor-biocroxytest:1.2.0--r44hdfd78af_0.json | 226 +++ .../c/chain2paf:0.1.1--h3ab6199_0.json | 3 + .../e/echidna:1.0.2--pyhdfd78af_0.json | 287 ++++ .../e/equirep:1.0.0--h9948957_0.json | 3 + .../g/gpatch:0.3.5--pyhdfd78af_0.json | 107 ++ .../g/gxf2chrom:0.1.0--h9948957_1.json | 3 + .../m/mcscanx:0.1--h9948957_0.json | 5 + .../o/occultercut:1.1--h503566f_1.json | 318 ++++ .../p/paf2chain:0.1.1--h3ab6199_0.json | 3 + .../p/popins2:0.13.0--h077b44d_0.json | 144 ++ .../p/pseqsid:1.0.2--h4349ce8_0.json | 3 + .../biocontainers/r/reago:_1.1--py27_0.json | 23 + .../s/seshat:0.10.0--py313hdfd78af_0.json | 191 +++ .../s/smcpp:1.15.4--py39hac1eaed_0.json | 344 ++++ .../s/softsv:1.4.2--hb891895_0.json | 55 + .../s/spclust:28.5.19--h425c490_1.json | 104 ++ ...superintervals:0.2.5--py310h8ea774a_0.json | 53 + .../v/virdig:1.0.0--h5ca1c30_0.json | 54 + 26 files changed, 4024 insertions(+), 736 deletions(-) create mode 100644 quay.io/biocontainers/b/bindashtree:0.1.0--h3ab6199_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-alphamissenser:1.2.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-anvilaz:1.0.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-anvilbase:1.0.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-anvilgcp:1.0.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-assorthead:1.0.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-ath1121501frmavecs:1.0.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/b/bioconductor-biocroxytest:1.2.0--r44hdfd78af_0.json create mode 100644 quay.io/biocontainers/c/chain2paf:0.1.1--h3ab6199_0.json create mode 100644 quay.io/biocontainers/e/echidna:1.0.2--pyhdfd78af_0.json create mode 100644 quay.io/biocontainers/e/equirep:1.0.0--h9948957_0.json create mode 100644 quay.io/biocontainers/g/gpatch:0.3.5--pyhdfd78af_0.json create mode 100644 quay.io/biocontainers/g/gxf2chrom:0.1.0--h9948957_1.json create mode 100644 quay.io/biocontainers/m/mcscanx:0.1--h9948957_0.json create mode 100644 quay.io/biocontainers/o/occultercut:1.1--h503566f_1.json create mode 100644 quay.io/biocontainers/p/paf2chain:0.1.1--h3ab6199_0.json create mode 100644 quay.io/biocontainers/p/popins2:0.13.0--h077b44d_0.json create mode 100644 quay.io/biocontainers/p/pseqsid:1.0.2--h4349ce8_0.json create mode 100644 quay.io/biocontainers/r/reago:_1.1--py27_0.json create mode 100644 quay.io/biocontainers/s/seshat:0.10.0--py313hdfd78af_0.json create mode 100644 quay.io/biocontainers/s/smcpp:1.15.4--py39hac1eaed_0.json create mode 100644 quay.io/biocontainers/s/softsv:1.4.2--hb891895_0.json create mode 100644 quay.io/biocontainers/s/spclust:28.5.19--h425c490_1.json create mode 100644 quay.io/biocontainers/s/superintervals:0.2.5--py310h8ea774a_0.json create mode 100644 quay.io/biocontainers/v/virdig:1.0.0--h5ca1c30_0.json diff --git a/counts.json b/counts.json index 0990d0e..c27b8af 100644 --- a/counts.json +++ b/counts.json @@ -2249,8 +2249,8 @@ ".open": 6, ".open-cravat-post-link.sh": 1, ".openmpi-post-link.sh": 44, - ".openssl-libcrypto-fix": 238, - ".openssl-post-link.sh": 238, + ".openssl-libcrypto-fix": 237, + ".openssl-post-link.sh": 237, ".orthomcl-post-link.sh": 1, ".pasa-post-link.sh": 2, ".pbaa-post-link.sh": 1, @@ -2326,16 +2326,16 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3838, - "2to3-3.10": 839, + "2to3": 3842, + "2to3-3.10": 840, "2to3-3.11": 286, - "2to3-3.12": 303, - "2to3-3.4": 6, + "2to3-3.12": 305, + "2to3-3.4": 5, "2to3-3.5": 103, "2to3-3.6": 344, "2to3-3.7": 383, "2to3-3.8": 580, - "2to3-3.9": 661, + "2to3-3.9": 662, "3EdgeTests": 1, "3_1_filter_mapQ_for_sam.pl": 1, "3seq": 1, @@ -2527,7 +2527,7 @@ "BedpeGeneAnnotation": 1, "BedpeSort": 1, "BedpeToBed": 1, - "Bifrost": 7, + "Bifrost": 8, "Binner": 1, "Binning_refiner": 1, "Binsanity": 1, @@ -2922,6 +2922,7 @@ "EnumVal": 55, "Epifany": 1, "Epsilon-NB.py": 1, + "EquiRep": 1, "ErrorCorrection": 1, "ErrorCount.sh": 2, "EsViritu": 1, @@ -3105,6 +3106,7 @@ "GNUVID_preprocessor.py": 1, "GNUVID_update_db.py": 1, "GO.db_3.5.0_R_x86_64-pc-linux-gnu.tar.gz": 2, + "GPatch": 1, "GSAlign": 1, "GSeeF": 1, "GSvar.ini.example": 1, @@ -3415,6 +3417,8 @@ "MBG": 3, "MBICseq": 1, "MCPB.py": 7, + "MCScanX": 1, + "MCScanX_h": 1, "MEGAN": 1, "MGCplotter": 1, "MHG": 1, @@ -3688,6 +3692,7 @@ "ORFfinder": 1, "ORNA": 1, "OSSolverService": 3, + "OcculterCut": 1, "Octopus": 1, "OligoWalk": 5, "Oncotator": 1, @@ -3961,7 +3966,7 @@ "QueueingSystem.dll": 1, "QuickDeconvolution": 1, "QuickSNP.py": 1, - "R": 4687, + "R": 4694, "R-scape": 2, "R-scape-sim": 2, "R-scape-sim-nobps": 2, @@ -4300,7 +4305,7 @@ "Rprof": 1, "Rsample": 5, "Rsample-smp": 5, - "Rscript": 4688, + "Rscript": 4695, "RunTHetA.py": 1, "Run_abSENSE.py": 1, "SAGE": 1, @@ -4482,6 +4487,7 @@ "SneakerNetPlugins.pl": 1, "SnpSift": 2, "SoftClipsToSplitReads": 1, + "SoftSV": 1, "SolexaQA++": 1, "SoloTE_RepeatMasker_to_BED.py": 1, "SoloTE_pipeline.py": 1, @@ -5131,7 +5137,7 @@ "acdvalid": 27, "ace.pl": 56, "ace2contig": 2, - "ace2sam": 537, + "ace2sam": 538, "aci": 1, "aclocal.bak": 11, "acmbuild": 1, @@ -5149,8 +5155,8 @@ "actc": 1, "action_report.py": 2, "activate": 1343, - "activate-global-python-argcomplete": 350, - "acyclic": 203, + "activate-global-python-argcomplete": 351, + "acyclic": 204, "adVNTR-Filtering": 1, "ada_model_builder_ntChange.R": 1, "ada_model_predictor.R": 1, @@ -5230,7 +5236,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4643, + "adig": 4654, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5336,7 +5342,7 @@ "aggregateBinDepths.pl": 6, "aggregateContigOverlapsByBin.pl": 6, "aggregate_align_metrics.py": 1, - "aggregate_profile.pl": 76, + "aggregate_profile.pl": 77, "aggregate_regions.awk": 1, "aggregate_scores_in_intervals.py": 60, "agouti": 1, @@ -5347,7 +5353,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4643, + "ahost": 4654, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -5627,9 +5633,9 @@ "annembed": 1, "annonars": 1, "annosine2": 1, - "annot-tsv": 63, + "annot-tsv": 64, "annot_blast_btop2.pl": 7, - "annotate": 257, + "annotate": 260, "annotate-partitions.py": 7, "annotate.py": 39, "annotate.pyc": 1, @@ -6028,7 +6034,7 @@ "ase-gui": 4, "ase-info": 4, "ase-run": 4, - "aserver": 468, + "aserver": 471, "asession": 3, "asgal": 1, "asgal_BitVector.py": 1, @@ -6091,7 +6097,7 @@ "assign_eggnog_funccats.pl": 1, "assign_taxonomy.py": 1, "assign_taxonomy_by_blast_result.py": 1, - "assistant": 260, + "assistant": 262, "assistant-qt4": 3, "assistant6": 3, "astalavista": 1, @@ -6114,7 +6120,7 @@ "atropos": 2, "atst": 2, "attotree": 1, - "attr": 51, + "attr": 53, "augment-bam": 1, "augur": 1, "augustify.py": 10, @@ -6161,7 +6167,7 @@ "autometa-taxonomy-majority-vote": 2, "autometa-unclustered-recruitment": 2, "autometa-update-databases": 2, - "autopoint": 5327, + "autopoint": 5329, "autoreconf.bak": 10, "autoscan.bak": 10, "autoupdate.bak": 10, @@ -6265,7 +6271,7 @@ "bali-phy-pkg": 1, "bali-subsample": 1, "balrog": 1, - "balsam": 50, + "balsam": 52, "baltic.py": 1, "bam": 1, "bam-extractor": 2, @@ -6465,7 +6471,7 @@ "bamtofastq": 3, "bamtofastq.py": 1, "bamtofastq_dir": 1, - "bamtools": 50, + "bamtools": 51, "bamtools-2.4.0": 3, "bamtools-2.4.1": 4, "bamutils": 1, @@ -6649,7 +6655,7 @@ "bcftools": 185, "bcgTree.pl": 1, "bcl_to_fastq": 1, - "bcomps": 203, + "bcomps": 204, "bcool": 2, "bcov": 1, "bcov2-strip": 1, @@ -6663,7 +6669,7 @@ "bdei_u": 1, "bdf2gdfont.PLS": 5, "bdf2gdfont.pl": 92, - "bdftogd": 243, + "bdftogd": 246, "bdss_ci_paths": 1, "beacon": 1, "beacon2-import": 1, @@ -6781,7 +6787,7 @@ "bgenFileInfo": 1, "bgenix": 1, "bgreat": 4, - "bgzip": 739, + "bgzip": 740, "bgzip.pl": 4, "bgziptabix": 32, "bialign.py": 1, @@ -6831,6 +6837,7 @@ "bind.pl": 1, "bind.pl.bak": 1, "bindash": 1, + "bindashtree": 1, "bindingsite": 1, "binette": 1, "binhex.pl": 59, @@ -6974,7 +6981,7 @@ "blast2lca": 1, "blast2rma": 1, "blast2sam": 1, - "blast2sam.pl": 537, + "blast2sam.pl": 538, "blastMapAnalyzer2.pl": 1, "blastMining": 1, "blastMining_lca.sh": 1, @@ -7100,7 +7107,7 @@ "bowtie2-inspect-l": 116, "bowtie2-inspect-s": 116, "bowtie2_stuff.py": 2, - "bowtie2sam.pl": 537, + "bowtie2sam.pl": 538, "bowtie_PE_separate_then_join.pl": 1, "bowtie_mapper.sh": 1, "box": 1, @@ -7267,7 +7274,7 @@ "broad_utils.py": 1, "brockman_pipeline": 1, "brooklyn_plot": 1, - "brotli": 488, + "brotli": 490, "browse": 18, "bs_call": 2, "bs_seeker2-align.py": 1, @@ -7372,7 +7379,7 @@ "bundlelinks": 2, "bundler": 19, "bunwarpj": 4, - "bunzip2": 6853, + "bunzip2": 6869, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7381,7 +7388,7 @@ "buscolite": 1, "bustools": 2, "bvop": 1, - "bwa": 173, + "bwa": 174, "bwa-aln-interactive": 1, "bwa-mem2": 8, "bwa-mem2.avx": 8, @@ -7426,16 +7433,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6853, - "bzcmp": 6853, - "bzdiff": 6853, - "bzegrep": 6853, - "bzfgrep": 6853, - "bzgrep": 6853, - "bzip2": 6854, - "bzip2recover": 6853, - "bzless": 6853, - "bzmore": 6853, + "bzcat": 6869, + "bzcmp": 6869, + "bzdiff": 6869, + "bzegrep": 6869, + "bzfgrep": 6869, + "bzgrep": 6869, + "bzip2": 6870, + "bzip2recover": 6869, + "bzless": 6869, + "bzmore": 6869, "c++": 5, "c++filt": 8, "c-index-test": 8, @@ -7452,7 +7459,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 8000, + "c_rehash": 8014, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7529,7 +7536,7 @@ "cagecatProcess.py": 1, "cagee": 1, "cai": 28, - "cairo-trace": 5187, + "cairo-trace": 5198, "cairosvg": 6, "cal": 13, "calD": 1, @@ -7602,7 +7609,7 @@ "campyagainst": 1, "campygstyper": 1, "canal": 2, - "canbusutil": 192, + "canbusutil": 194, "canda": 1, "candf": 1, "candidate_variants_finder": 1, @@ -7634,7 +7641,7 @@ "capnpc-cython": 1, "capost2gnu": 1, "capri_eval": 1, - "captoinfo": 7931, + "captoinfo": 7945, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -7741,7 +7748,7 @@ "ccmake": 12, "ccne-acc": 1, "ccne-fast": 1, - "ccomps": 203, + "ccomps": 204, "cconfig": 1, "ccphylo": 2, "ccqtl": 1, @@ -7829,7 +7836,7 @@ "cert2spc": 16, "certmgr": 16, "certtool": 33, - "certutil": 190, + "certutil": 192, "cesar": 1, "cestat-cov": 2, "cestats": 7, @@ -7868,6 +7875,7 @@ "chado": 1, "chado2gff3": 1, "chain2dim": 3, + "chain2paf": 1, "chainAntiRepeat": 1, "chainFilter": 1, "chainMergeSort": 2, @@ -8036,6 +8044,7 @@ "chrom_sizes.pl": 92, "chromap": 1, "chromatiblock": 1, + "chromedriver-path": 1, "chromograph": 1, "chromopainter2chromopainterv2.pl": 1, "chromosight": 1, @@ -8058,7 +8067,7 @@ "circle_map++": 1, "circledetector.py": 1, "circminer": 1, - "circo": 203, + "circo": 204, "circos": 22, "circos.exe": 22, "circtools": 1, @@ -8083,7 +8092,7 @@ "cit2pmid": 41, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5878, + "cjpeg": 5889, "ckeygen": 1, "cksum": 86, "claMLST": 1, @@ -8194,7 +8203,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7931, + "clear": 7945, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -8286,7 +8295,7 @@ "clustalw2": 81, "clustalw2fasta": 13, "clustalw2phylip": 13, - "cluster": 208, + "cluster": 209, "cluster-picker": 2, "cluster2bed.pl": 5, "cluster2bedgraph.pl": 5, @@ -8572,7 +8581,7 @@ "compileSpliceCands": 13, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5938, + "compile_et": 5951, "compiled_table.py": 1, "compleasm": 1, "complementBed": 281, @@ -8750,11 +8759,11 @@ "conv-template": 17, "convbkmk": 1, "convert": 77, - "convert-caffe2-to-onnx": 59, + "convert-caffe2-to-onnx": 60, "convert-ccds-to-bed": 3, "convert-fasta-to-v2.pl": 3, "convert-mirdeep2-fasta.py": 1, - "convert-onnx-to-caffe2": 59, + "convert-onnx-to-caffe2": 60, "convert-readcount-file.py": 1, "convert-regions": 2, "convert-sam-for-rsem": 1, @@ -8886,7 +8895,7 @@ "core_diversity_analyses.py": 1, "core_methods.py": 1, "core_overlap_plot.py": 1, - "corelist": 1751, + "corelist": 1752, "corepack": 12, "coreprocess.pl": 3, "coresnpfilter": 1, @@ -8994,7 +9003,7 @@ "cp2k_run": 1, "cp2k_shell.ssmp": 1, "cpack": 12, - "cpan": 1751, + "cpan": 1752, "cpancover": 6, "cpanm": 245, "cpat.py": 1, @@ -9235,7 +9244,7 @@ "cuffquant": 2, "cuppa": 1, "cuppa-chart": 1, - "cups-config": 220, + "cups-config": 223, "curare": 1, "curare_wizard": 1, "curate_chemical_data": 1, @@ -9243,8 +9252,8 @@ "curate_spatial_data": 1, "curate_universe": 1, "curesim": 2, - "curl": 5156, - "curl-config": 6038, + "curl": 5163, + "curl-config": 6049, "curlywhirly": 1, "curve_keygen": 73, "cusp": 27, @@ -9313,11 +9322,11 @@ "cxpm": 60, "cycle_finder": 1, "cyclone": 1, - "cygdb": 85, + "cygdb": 86, "cyntenator": 1, "cyrcular": 1, - "cython": 85, - "cythonize": 85, + "cython": 86, + "cythonize": 86, "cytocad": 2, "cytoscape.sh": 14, "cytosnake": 1, @@ -9468,16 +9477,16 @@ "dbscan": 1, "dbsnp_iit": 12, "dbtell": 27, - "dbus-cleanup-sockets": 267, - "dbus-daemon": 267, + "dbus-cleanup-sockets": 269, + "dbus-daemon": 269, "dbus-daemon-launch-helper": 1, - "dbus-launch": 267, - "dbus-monitor": 267, - "dbus-run-session": 267, - "dbus-send": 267, - "dbus-test-tool": 267, - "dbus-update-activation-environment": 267, - "dbus-uuidgen": 267, + "dbus-launch": 269, + "dbus-monitor": 269, + "dbus-run-session": 269, + "dbus-send": 269, + "dbus-test-tool": 269, + "dbus-update-activation-environment": 269, + "dbus-uuidgen": 269, "dbxcompress": 27, "dbxedam": 27, "dbxfasta": 27, @@ -9639,7 +9648,7 @@ "del01_delete_db_entries.py": 1, "del_from_prfl.pl": 15, "del_parse.py": 1, - "delaunay": 148, + "delaunay": 149, "deldup": 1, "delete_db": 1, "deletion_profile.py": 3, @@ -9704,7 +9713,7 @@ "depth_calc.py": 1, "depth_estim_from_vcf.sh": 1, "depythontex": 1, - "derb": 5939, + "derb": 5952, "derep_stuff.py": 2, "deripcal": 1, "derna": 1, @@ -9730,7 +9739,7 @@ "design_edit_metric_tags.py": 1, "design_large.py": 1, "design_naively.py": 2, - "designer": 260, + "designer": 262, "designer-qt4": 3, "designer6": 3, "desman": 1, @@ -9801,7 +9810,7 @@ "differential_abundance.py": 1, "differential_md_score": 1, "differential_modification": 1, - "diffimg": 146, + "diffimg": 147, "difflist2bed.pl": 5, "diffmat_precalc": 1, "diffseq": 27, @@ -9810,7 +9819,7 @@ "digestdb": 2, "digestiflow-cli": 1, "digestiflow-demux": 1, - "dijkstra": 203, + "dijkstra": 204, "dimacs-solver": 4, "dimacs-to-lgf": 4, "dimspy": 1, @@ -9912,7 +9921,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5878, + "djpeg": 5889, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -10008,11 +10017,11 @@ "dosage_score": 1, "dosage_score_plot": 1, "dosimple": 1, - "dot": 203, + "dot": 204, "dot2ct": 5, - "dot2gxl": 203, + "dot2gxl": 204, "dot2pp": 4, - "dot_builtins": 203, + "dot_builtins": 204, "dotenv": 9, "dotmatcher": 27, "dotpath": 27, @@ -10265,6 +10274,7 @@ "duplicateCol.pl": 5, "duplicate_file": 1, "duplicate_finder.py": 1, + "duplicate_gene_classifier": 1, "duplicate_header_remover.pl": 22, "duplicated_records_remover.py": 1, "dupliconToSVG.pl": 15, @@ -10341,8 +10351,8 @@ "easy-fuse": 1, "easy.py": 1, "easy_install": 1729, - "easy_install-2.7": 39, - "easy_install-3.4": 6, + "easy_install-2.7": 40, + "easy_install-3.4": 5, "easy_install-3.5": 74, "easy_install-3.6": 73, "easydev_buildPackage": 12, @@ -10382,7 +10392,7 @@ "edgembar": 1, "edgembar-WriteGraphHtml.py": 1, "edgembar-amber2dats.py": 1, - "edgepaint": 203, + "edgepaint": 204, "edgeredef": 5, "edialign": 27, "edirect.pl": 88, @@ -10487,8 +10497,8 @@ "enano": 1, "enasearch": 1, "enc": 1, - "enc2xs": 1751, - "encguess": 1751, + "enc2xs": 1752, + "encguess": 1752, "encode2var": 1, "encode_dir": 1, "encode_exclude_loci": 1, @@ -10537,7 +10547,7 @@ "environment.yml": 1, "envpath": 3, "envset.cmd": 1, - "envsubst": 5327, + "envsubst": 5329, "eoulsan.sh": 1, "epa-ng": 4, "epestfind": 27, @@ -10777,7 +10787,7 @@ "exporTPP.pl": 2, "export-itol.pl": 1, "export2graphlan.py": 1, - "export2sam.pl": 537, + "export2sam.pl": 538, "exportTools.sh": 1, "export_mitochondrial_contigs.py": 1, "export_norm_data": 1, @@ -10944,7 +10954,7 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 2196, + "f2py": 2199, "f2py2": 136, "f2py2.7": 136, "f2py3": 1604, @@ -11072,7 +11082,7 @@ "fasta-most": 13, "fasta-nr": 4, "fasta-re-match": 8, - "fasta-sanitize.pl": 335, + "fasta-sanitize.pl": 336, "fasta-shuffle-letters": 13, "fasta-splitter": 1, "fasta-strip-identifier": 2, @@ -11409,19 +11419,19 @@ "fasxl": 2, "fathom": 2, "favites_lite.py": 1, - "fax2ps": 5348, - "fax2tiff": 5348, + "fax2ps": 5359, + "fax2tiff": 5359, "fba": 1, "fc": 1, - "fc-cache": 5391, - "fc-cat": 5391, - "fc-conflist": 4908, - "fc-list": 5391, - "fc-match": 5391, - "fc-pattern": 5391, - "fc-query": 5391, - "fc-scan": 5391, - "fc-validate": 5391, + "fc-cache": 5402, + "fc-cat": 5402, + "fc-conflist": 4919, + "fc-list": 5402, + "fc-match": 5402, + "fc-pattern": 5402, + "fc-query": 5402, + "fc-scan": 5402, + "fc-validate": 5402, "fc_actg_coordinate": 1, "fc_calc_cutoff": 1, "fc_consensus": 1, @@ -11477,7 +11487,7 @@ "fdollop": 2, "fdolmove": 2, "fdolpenny": 2, - "fdp": 203, + "fdp": 204, "fdr_cutoff.py": 1, "fdrawgram": 2, "fdrawtree": 2, @@ -11923,10 +11933,10 @@ "fixfrg": 2, "fixgaps.sh": 30, "fixlib": 2, - "fixqt4headers.pl": 251, + "fixqt4headers.pl": 253, "fixremdcouts.py": 7, "fkitsch": 2, - "flac": 54, + "flac": 56, "flag_circular.py": 2, "flagstats-quickbam": 1, "flaimapper": 1, @@ -12003,7 +12013,7 @@ "font-awesome-to-png": 2, "font2c": 3, "fontinst": 1, - "fonttools": 462, + "fonttools": 464, "fop": 1, "forceOneClusterPerPairMem.py": 1, "forest.py": 1, @@ -12095,7 +12105,7 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5941, + "freetype-config": 5952, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -12109,7 +12119,7 @@ "frg2fastq": 2, "frg2ta": 2, "frgs2clones": 3, - "fribidi": 4047, + "fribidi": 4057, "frictionless": 1, "frm_admin": 1, "frm_purged": 1, @@ -12491,7 +12501,7 @@ "gapless.sh": 1, "gapmm2": 1, "gappa": 2, - "gapplication": 2362, + "gapplication": 2364, "gapseq": 1, "garnett_check_markers.R": 1, "garnett_classify_cells.R": 1, @@ -12547,7 +12557,7 @@ "gbrowse.conf": 15, "gbrowseold2gff3.pl": 15, "gbsx": 1, - "gc": 205, + "gc": 206, "gc-assembler": 1, "gc-content-plot": 2, "gc3s": 1, @@ -12583,9 +12593,9 @@ "gctb": 1, "gctx2gct": 2, "gcv": 2, - "gd2copypal": 243, - "gd2togif": 243, - "gd2topng": 243, + "gd2copypal": 246, + "gd2togif": 246, + "gd2topng": 246, "gdal-config": 40, "gdal2tiles": 1, "gdal2tiles.py": 6, @@ -12651,27 +12661,27 @@ "gdbm_dump": 25, "gdbm_load": 25, "gdbmtool": 25, - "gdbus": 1668, - "gdbus-codegen": 1666, + "gdbus": 1670, + "gdbus-codegen": 1668, "gdc-client": 1, - "gdcmpgif": 243, + "gdcmpgif": 246, "gddiag": 22, "gdi": 1, "gdiff": 1, "gdistribution": 1, - "gdk-pixbuf-csource": 217, - "gdk-pixbuf-pixdata": 217, - "gdk-pixbuf-query-loaders": 217, - "gdk-pixbuf-thumbnailer": 216, + "gdk-pixbuf-csource": 218, + "gdk-pixbuf-pixdata": 218, + "gdk-pixbuf-query-loaders": 218, + "gdk-pixbuf-thumbnailer": 217, "gdlib-config": 44, "gdmicro": 1, "gdown": 4, - "gdparttopng": 243, + "gdparttopng": 246, "gdrive": 1, "gdsctools_anova": 1, "gdsctools_regression": 1, "gdtools": 1, - "gdtopng": 243, + "gdtopng": 246, "gecco": 2, "geckodriver": 2, "geecee": 27, @@ -12709,17 +12719,17 @@ "genbank_to": 1, "genblastG": 1, "genbox": 1, - "genbrk": 5939, - "gencfu": 5939, + "genbrk": 5952, + "gencfu": 5952, "genclust": 1, - "gencnval": 5939, + "gencnval": 5952, "gencode_extract_relevant_gtf_exons.pl": 1, "gencode_singleton_unit_test": 5, "genconf": 1, "gencore": 1, "gencove": 1, "gendb": 13, - "gendict": 5939, + "gendict": 5952, "gendist": 10, "gene2protein.db3": 2, "gene2range": 218, @@ -12887,7 +12897,7 @@ "genotyphi.py": 1, "genpcz": 2, "genpept2gsi.pl": 2, - "genrb": 5939, + "genrb": 5952, "genreflex": 3, "genremdinputs.py": 7, "genrestr": 4, @@ -13140,7 +13150,7 @@ "getdepth_min": 1, "getdepth_min_dir": 1, "getfastq.sh": 1, - "getfattr": 51, + "getfattr": 53, "getfeatures.py": 2, "getfilesToTaxNodes": 1, "getgenomealigndepth": 1, @@ -13166,9 +13176,9 @@ "getscu": 1, "getsize": 13, "getsnvfreq_by_interval": 1, - "gettext": 5327, - "gettext.sh": 5327, - "gettextize": 5327, + "gettext": 5329, + "gettext.sh": 5329, + "gettextize": 5329, "getu0.X86_64.LINUX": 1, "getu0.X86_64.SUNOS": 1, "getuniqgenomealign": 1, @@ -13275,23 +13285,23 @@ "ghmm-config": 3, "ghostx": 3, "ghostz": 1, - "gi-compile-repository": 22, - "gi-decompile-typelib": 22, - "gi-inspect-typelib": 22, + "gi-compile-repository": 24, + "gi-decompile-typelib": 24, + "gi-inspect-typelib": 24, "gi2ancestors.sh": 31, "gi2taxid.sh": 31, "gid-taxid": 1, "gie": 44, - "gif2h5": 582, + "gif2h5": 583, "gif2hdf": 130, - "gif2rgb": 782, + "gif2rgb": 783, "gif2tiff": 189, "gif2webp": 357, - "gifbuild": 782, - "gifclrmp": 782, + "gifbuild": 783, + "gifclrmp": 783, "gifecho": 39, "giffilter": 25, - "giffix": 782, + "giffix": 783, "gifinto": 39, "gifmaker.py": 20, "gifrop": 1, @@ -13302,18 +13312,18 @@ "gifrop_pannotate.R": 1, "gifrop_plots.R": 1, "gifsponge": 25, - "giftext": 782, - "giftogd2": 243, - "giftool": 782, + "giftext": 783, + "giftogd2": 246, + "giftool": 783, "gigrnd.py": 1, "gil2bin": 1, "gimbleprep": 1, "gimme": 4, "gimme_taxa.py": 10, "ginsi": 113, - "gio": 1556, + "gio": 1558, "gio-launch-desktop": 668, - "gio-querymodules": 1668, + "gio-querymodules": 1670, "gisaid-batch": 1, "git": 31, "git-clang-format": 7, @@ -13342,11 +13352,11 @@ "glam2scan": 13, "glam2scan2html": 13, "glewinfo": 1, - "glib-compile-resources": 1666, - "glib-compile-schemas": 1668, - "glib-genmarshal": 1666, - "glib-gettextize": 1666, - "glib-mkenums": 1666, + "glib-compile-resources": 1668, + "glib-compile-schemas": 1670, + "glib-genmarshal": 1668, + "glib-gettextize": 1668, + "glib-mkenums": 1668, "glim-diff.awk": 2, "glimmer3": 2, "glimmerhmm": 16, @@ -13357,7 +13367,7 @@ "glnexus_cli": 1, "glob_res.pl": 1, "global.json": 1, - "glpsol": 254, + "glpsol": 255, "glsearch36": 7, "gm": 2, "gm2ranges": 41, @@ -13387,7 +13397,7 @@ "gmk_m3": 2, "gmk_msh": 2, "gmk_ub2": 2, - "gml2gv": 203, + "gml2gv": 204, "gmsc-mapper": 1, "gmt2regions": 1, "gmtkDMLPtrain": 4, @@ -13432,7 +13442,7 @@ "gnmmanage": 39, "gnos_pull.pl": 3, "gnparser": 1, - "gnuplot": 24, + "gnuplot": 26, "gnuplot_qt": 1, "gnutls-cli": 33, "gnutls-cli-debug": 33, @@ -13475,7 +13485,7 @@ "goalign": 1, "goalign_test.sh": 1, "goat-cli": 1, - "gobject-query": 1666, + "gobject-query": 1668, "goblin": 1, "gocr": 2, "gocr.tcl": 2, @@ -13516,7 +13526,7 @@ "gomo_highlight": 13, "goname": 27, "google-api": 1, - "google-oauthlib-tool": 62, + "google-oauthlib-tool": 63, "google_accounts_daemon": 1, "google_clock_skew_daemon": 1, "google_instance_setup": 1, @@ -13547,13 +13557,13 @@ "gpg-agent": 2, "gpg-card": 2, "gpg-connect-agent": 2, - "gpg-error": 41, + "gpg-error": 43, "gpg-error-config": 4, "gpg-wks-client": 2, "gpg-wks-server": 2, "gpgconf": 2, "gpgparsemail": 2, - "gpgrt-config": 41, + "gpgrt-config": 43, "gpgscm": 2, "gpgsm": 2, "gpgsplit": 2, @@ -13595,7 +13605,7 @@ "graphmap": 2, "graphmap2": 1, "graphmb": 1, - "graphml2gv": 203, + "graphml2gv": 204, "graphtyper": 1, "graphunzip.py": 1, "grappaResultParser": 1, @@ -13612,7 +13622,7 @@ "grep": 25, "grep.py": 1, "grepf": 1, - "gresource": 1668, + "gresource": 1670, "gretel": 1, "gretel-snpper": 1, "gretl": 1, @@ -13682,13 +13692,13 @@ "gsea": 1, "gsea-cli": 1, "gseapy": 6, - "gsettings": 1668, + "gsettings": 1670, "gsf": 1, "gsf-office-thumbnailer": 1, "gsf-vba-dump": 1, - "gsl-config": 4588, - "gsl-histogram": 4588, - "gsl-randist": 4588, + "gsl-config": 4596, + "gsl-histogram": 4596, + "gsl-randist": 4596, "gslj": 106, "gslp": 106, "gsmap": 1, @@ -13700,18 +13710,18 @@ "gsnapl.sse42": 12, "gsnd": 106, "gsort": 5, - "gss-client": 5938, + "gss-client": 5951, "gss-server": 2, "gst-completion-helper": 1, - "gst-device-monitor-1.0": 244, - "gst-discoverer-1.0": 244, - "gst-inspect-1.0": 258, - "gst-launch-1.0": 258, - "gst-play-1.0": 244, + "gst-device-monitor-1.0": 246, + "gst-discoverer-1.0": 246, + "gst-inspect-1.0": 260, + "gst-launch-1.0": 260, + "gst-play-1.0": 246, "gst-plugin-scanner": 1, "gst-ptp-helper": 1, - "gst-stats-1.0": 258, - "gst-typefind-1.0": 258, + "gst-stats-1.0": 260, + "gst-typefind-1.0": 260, "gstacks": 1, "gsutil": 11, "gt": 13, @@ -13720,8 +13730,8 @@ "gtdb_to_taxdump.py": 1, "gtdbtk": 2, "gtest": 3, - "gtester": 1666, - "gtester-report": 1666, + "gtester": 1668, + "gtester-report": 1668, "gtf-to-bed12": 3, "gtf2aa.pl": 13, "gtf2bed": 16, @@ -13770,20 +13780,20 @@ "gthgetseq": 3, "gthsplit": 3, "gthsplit2dim.sh": 3, - "gtk-builder-convert": 188, + "gtk-builder-convert": 189, "gtk-builder-tool": 4, - "gtk-demo": 188, + "gtk-demo": 189, "gtk-encode-symbolic-svg": 4, "gtk-launch": 4, - "gtk-query-immodules-2.0": 188, + "gtk-query-immodules-2.0": 189, "gtk-query-immodules-3.0": 4, "gtk-query-settings": 4, "gtk-update-icon-cache": 186, "gtop": 2, - "gts-config": 148, - "gts2dxf": 148, - "gts2oogl": 148, - "gts2stl": 148, + "gts-config": 149, + "gts2dxf": 149, + "gts2oogl": 149, + "gts2stl": 149, "gts_compare": 1, "gts_copy": 1, "gts_count": 1, @@ -13791,10 +13801,10 @@ "gts_filter": 1, "gts_get": 1, "gts_ls": 1, - "gtscheck": 148, - "gtscompare": 148, + "gtscheck": 149, + "gtscompare": 149, "gtst": 2, - "gtstemplate": 148, + "gtstemplate": 149, "gtt-align-and-trim-parallel.sh": 1, "gtt-amino-acid-parallel.sh": 1, "gtt-amino-acid-serial.sh": 1, @@ -13855,6 +13865,7 @@ "guidescan_cutting_specificity_processer": 1, "guidescan_guidequery": 1, "guidescan_processer": 1, + "guispclust": 1, "gunc": 1, "gunicorn": 6, "gunzip": 23, @@ -13863,13 +13874,13 @@ "gushr.py": 1, "gustaf": 2, "gustaf_mate_joining": 2, - "gv2gml": 203, - "gv2gxl": 203, + "gv2gml": 204, + "gv2gxl": 204, "gvcf2bed": 2, "gvcf2coverage": 1, "gvcf_regions.py": 1, "gvcfgenotyper": 1, - "gvcolor": 203, + "gvcolor": 204, "gvf2bed": 15, "gvf2bed-float128": 15, "gvf2bed-megarow": 15, @@ -13879,11 +13890,11 @@ "gvf2starch-megarow": 15, "gvf2starch-typical": 15, "gvf_iit": 12, - "gvgen": 203, - "gvmap": 203, - "gvmap.sh": 203, - "gvpack": 203, - "gvpr": 203, + "gvgen": 204, + "gvmap": 204, + "gvmap.sh": 204, + "gvpack": 204, + "gvpr": 204, "gw-forcefield.py": 1, "gw-join_parts.py": 1, "gw-merge_topologies.py": 1, @@ -13906,8 +13917,9 @@ "gx-fastq-trimmer": 2, "gx-fastq-trimmer-by-quality": 2, "gxf2bed": 1, - "gxl2dot": 203, - "gxl2gv": 203, + "gxf2chrom": 1, + "gxl2dot": 204, + "gxl2gv": 204, "gxw2consensus.pl": 1, "gxw2consensus.pl.bak": 1, "gxw2stats.pl": 1, @@ -13925,40 +13937,40 @@ "h264dec": 12, "h264enc": 12, "h2load": 3929, - "h2ph": 1751, - "h2xs": 1751, + "h2ph": 1752, + "h2xs": 1752, "h4_ncdump": 130, "h4_ncgen": 130, "h4cc": 130, "h4redeploy": 130, - "h52gif": 582, - "h5c++": 582, - "h5cc": 587, - "h5clear": 566, - "h5copy": 582, - "h5debug": 582, - "h5delete": 122, - "h5diff": 582, - "h5dump": 584, - "h5fc": 569, - "h5format_convert": 566, + "h52gif": 583, + "h5c++": 583, + "h5cc": 588, + "h5clear": 567, + "h5copy": 583, + "h5debug": 583, + "h5delete": 123, + "h5diff": 583, + "h5dump": 585, + "h5fc": 570, + "h5format_convert": 567, "h5fuse": 2, - "h5fuse.sh": 87, - "h5import": 582, - "h5jam": 582, - "h5ls": 582, - "h5mkgrp": 582, + "h5fuse.sh": 88, + "h5import": 583, + "h5jam": 583, + "h5ls": 583, + "h5mkgrp": 583, "h5pcc": 3, "h5perf": 3, - "h5perf_serial": 582, + "h5perf_serial": 583, "h5pfc": 3, - "h5redeploy": 582, - "h5repack": 582, - "h5repart": 582, - "h5stat": 582, - "h5tools_test_utils": 66, - "h5unjam": 582, - "h5watch": 566, + "h5redeploy": 583, + "h5repack": 583, + "h5repart": 583, + "h5stat": 583, + "h5tools_test_utils": 67, + "h5unjam": 583, + "h5watch": 567, "hAMRoaster": 1, "h_num": 1, "haarz.x": 1, @@ -14106,11 +14118,11 @@ "haystack_pipeline": 1, "haystack_run_test": 1, "haystack_tf_activity_plane": 1, - "hb-info": 324, - "hb-ot-shape-closure": 5126, - "hb-shape": 5126, - "hb-subset": 4690, - "hb-view": 5083, + "hb-info": 335, + "hb-ot-shape-closure": 5137, + "hb-shape": 5137, + "hb-subset": 4701, + "hb-view": 5094, "hbvblast.sh": 1, "hca-matrix-downloader": 1, "hca-mtx-to-10x": 1, @@ -14431,7 +14443,7 @@ "htseq-count": 22, "htseq-count-barcodes": 14, "htseq-qa": 22, - "htsfile": 735, + "htsfile": 736, "htsget": 2, "htsinfer": 1, "httpcfg": 16, @@ -14494,21 +14506,21 @@ "humann_unpack_pathways": 1, "humid": 1, "hv-pipeline.py": 1, - "hwloc-annotate": 99, + "hwloc-annotate": 100, "hwloc-assembler": 2, "hwloc-assembler-remote": 2, - "hwloc-bind": 99, - "hwloc-calc": 99, - "hwloc-compress-dir": 99, - "hwloc-diff": 99, + "hwloc-bind": 100, + "hwloc-calc": 100, + "hwloc-compress-dir": 100, + "hwloc-diff": 100, "hwloc-distances": 2, - "hwloc-distrib": 99, - "hwloc-gather-cpuid": 97, - "hwloc-gather-topology": 99, - "hwloc-info": 99, - "hwloc-ls": 99, - "hwloc-patch": 99, - "hwloc-ps": 99, + "hwloc-distrib": 100, + "hwloc-gather-cpuid": 98, + "hwloc-gather-topology": 100, + "hwloc-info": 100, + "hwloc-ls": 100, + "hwloc-patch": 100, + "hwloc-ps": 100, "hyb_analyze": 1, "hyb_check": 1, "hyb_eval": 1, @@ -14577,9 +14589,9 @@ "ichar": 1, "icon-font-to-png": 2, "iconv": 5462, - "icu-config": 5939, - "icuexportdata": 2150, - "icuinfo": 5939, + "icu-config": 5952, + "icuexportdata": 2163, + "icuinfo": 5952, "id": 86, "id_conserved_regions.pl": 1, "idba": 10, @@ -14612,18 +14624,18 @@ "idespair": 1, "idfetch": 1, "idiag-socket-details": 14, - "idle": 334, - "idle3": 3530, - "idle3.10": 839, + "idle": 335, + "idle3": 3536, + "idle3.10": 840, "idle3.11": 286, - "idle3.12": 303, - "idle3.13": 25, - "idle3.4": 6, + "idle3.12": 305, + "idle3.13": 28, + "idle3.4": 5, "idle3.5": 103, "idle3.6": 344, "idle3.7": 383, "idle3.8": 580, - "idle3.9": 661, + "idle3.9": 662, "idlj": 117, "idmatrix.sh": 31, "idn": 31, @@ -14694,7 +14706,7 @@ "igor": 1, "igor-compute_pgen": 1, "igphyml": 1, - "igraph": 55, + "igraph": 56, "igraph_extract_clusters.R": 1, "igv": 1, "igv_hidpi": 1, @@ -14838,11 +14850,11 @@ "infoalign": 27, "infoassembly": 27, "infobase": 27, - "infocmp": 7931, + "infocmp": 7945, "inforesidue": 27, "informant.py": 1, "infoseq": 27, - "infotocap": 7931, + "infotocap": 7945, "ini2xml": 41, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -14882,7 +14894,7 @@ "install": 86, "install.db.tables.r": 5, "install.pl": 2, - "installBiocDataPackage.sh": 300, + "installBiocDataPackage.sh": 301, "installMetaphyler.pl": 1, "installPackages.R": 1, "install_archived_sybilSBML.sh": 1, @@ -14904,7 +14916,7 @@ "installpackages.R": 1, "installvst": 16, "instance_events": 29, - "instmodsh": 1751, + "instmodsh": 1752, "int_seqs_to_char_strings.py": 60, "intake": 1, "intake-server": 1, @@ -14935,7 +14947,7 @@ "interop_plot_qscore_histogram": 4, "interop_plot_sample_qc": 4, "interop_summary": 4, - "interpolate_sam.pl": 537, + "interpolate_sam.pl": 538, "interprophet.rb": 1, "interproscan.sh": 1, "intersect": 5, @@ -15007,8 +15019,8 @@ "ipopt": 1, "ipopt_sens": 1, "ipostproc": 1, - "ippeveprinter": 220, - "ipptool": 220, + "ippeveprinter": 223, + "ipptool": 223, "ipr_update_gff": 1, "iprocdic": 1, "iprscan2gff3": 1, @@ -15079,7 +15091,7 @@ "isql": 1, "iss": 2, "isutf8": 3, - "isympy": 43, + "isympy": 44, "it.cpython-36m-x86_64-linux-gnu.so": 1, "it.so": 1, "iterate": 2, @@ -15178,8 +15190,8 @@ "jamo-normalize": 1, "jannovar": 1, "jaotc": 312, - "jar": 556, - "jarsigner": 556, + "jar": 557, + "jarsigner": 557, "jasmine": 3, "jasmine.jar": 1, "jasmine_igv.jar": 1, @@ -15190,22 +15202,22 @@ "jaspscan": 27, "jass": 1, "jass_preprocessing": 1, - "java": 556, + "java": 557, "java-rmi.cgi": 112, - "javac": 556, - "javadoc": 556, + "javac": 557, + "javadoc": 557, "javah": 112, - "javap": 556, + "javap": 557, "javareconf": 1, "jbig2dec": 1, "jbrowse": 1, "jcast": 1, "jclusterfunk": 2, - "jcmd": 556, - "jconsole": 556, - "jdb": 556, - "jdeprscan": 447, - "jdeps": 555, + "jcmd": 557, + "jconsole": 557, + "jdb": 557, + "jdeprscan": 448, + "jdeps": 556, "je": 2, "jellyfish": 48, "jemalloc-config": 14, @@ -15213,22 +15225,22 @@ "jembossctl": 27, "jeprof": 14, "jf_aligner": 1, - "jfr": 391, + "jfr": 392, "jgiDwnld": 2, "jgi_gc": 1, "jgi_summarize_bam_contig_depths": 6, "jgoslin": 1, "jhat": 112, - "jhsdb": 447, - "jimage": 447, - "jinfo": 556, + "jhsdb": 448, + "jimage": 448, + "jinfo": 557, "jiv": 6, "jiwer": 1, "jjs": 422, - "jlink": 447, + "jlink": 448, "jlpm": 4, - "jmap": 556, - "jmod": 447, + "jmap": 557, + "jmod": 448, "jmztab-m": 1, "job-shop": 1, "jobTreeKill": 2, @@ -15260,24 +15272,24 @@ "joint-indels": 1, "joint-parsimony": 1, "jp.py": 109, - "jpackage": 135, + "jpackage": 136, "jpeg2hdf": 130, - "jpegtran": 5878, - "jpgicc": 1078, + "jpegtran": 5889, + "jpgicc": 1081, "jpredapi": 1, - "jps": 556, - "jq": 313, + "jps": 557, + "jq": 314, "jronn": 1, - "jrunscript": 556, + "jrunscript": 557, "js-beautify": 1, "jsadebugd": 112, "jscan": 1, "jsearch": 1, - "jshell": 447, + "jshell": 448, "json2gff": 1, "json2xml": 230, "json_collect_data_source.py": 1, - "json_pp": 1751, + "json_pp": 1752, "json_xs": 376, "jsondiff": 9, "jsonl2xml": 41, @@ -15286,9 +15298,9 @@ "jsonpath_ng": 1, "jsonpointer": 15, "jsonschema": 233, - "jstack": 556, - "jstat": 556, - "jstatd": 556, + "jstack": 557, + "jstat": 557, + "jstatd": 557, "juicer": 1, "juicer_shortform2pairs.pl": 22, "julia": 6, @@ -15338,15 +15350,15 @@ "just-first-key": 20, "just-top-hits": 21, "just_blast_test.pl": 1, - "jwebserver": 51, - "k5srvutil": 5938, + "jwebserver": 52, + "k5srvutil": 5951, "k8": 171, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5938, + "kadmin": 5951, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -15441,7 +15453,7 @@ "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, "kdbmeta.3.1.1": 1, - "kdestroy": 5938, + "kdestroy": 5951, "kea-config": 38, "keep-header": 1, "keep-ribo-periodic": 1, @@ -15453,10 +15465,10 @@ "keggpathway_map.py": 1, "kestrel": 1, "keyFreq": 1, - "keyctl": 2567, + "keyctl": 2580, "keygen": 1, "keyring": 11, - "keytool": 556, + "keytool": 557, "kget": 18, "kget.2": 18, "kget.2.10.0": 1, @@ -15484,7 +15496,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5938, + "kinit": 5951, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 57, @@ -15497,7 +15509,7 @@ "kitsch": 10, "kitsune": 1, "kleborate": 1, - "klist": 5938, + "klist": 5951, "kma": 19, "kma_index": 19, "kma_shm": 19, @@ -15589,7 +15601,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5938, + "kpasswd": 5951, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -15636,7 +15648,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5938, + "krb5-config": 5951, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -15652,9 +15664,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5938, + "ksu": 5951, "ksw": 1, - "kswitch": 5938, + "kswitch": 5951, "ktClassifyBLAST": 17, "ktClassifyHits": 13, "ktGetContigMagnitudes": 17, @@ -15685,12 +15697,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5938, + "ktutil": 5951, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5938, + "kvno": 5951, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15705,7 +15717,7 @@ "lambda": 1, "lambda2": 1, "lambda_indexer": 1, - "lame": 49, + "lame": 51, "lamp": 1, "langford-number": 2, "largeb_despair": 1, @@ -15786,24 +15798,24 @@ "lc": 16, "lc_approx": 1, "lckdo": 3, - "lconvert": 260, + "lconvert": 262, "lconvert-qt4": 3, "lcp.bat": 1, "ld": 8, "ld.awk": 1, "ld.bfd": 8, "ld.gold": 8, - "ldapadd": 3, - "ldapcompare": 3, - "ldapdelete": 3, - "ldapexop": 3, - "ldapmodify": 3, - "ldapmodrdn": 3, - "ldappasswd": 3, - "ldapsearch": 3, - "ldapurl": 3, - "ldapvc": 3, - "ldapwhoami": 3, + "ldapadd": 5, + "ldapcompare": 5, + "ldapdelete": 5, + "ldapexop": 5, + "ldapmodify": 5, + "ldapmodrdn": 5, + "ldappasswd": 5, + "ldapsearch": 5, + "ldapurl": 5, + "ldapvc": 5, + "ldapwhoami": 5, "ldc-build-runtime": 17, "ldc-profdata": 17, "ldc-prune-cache": 17, @@ -15861,8 +15873,8 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4257, - "libdeflate-gzip": 4257, + "libdeflate-gunzip": 4270, + "libdeflate-gzip": 4270, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, @@ -15871,9 +15883,9 @@ "libiomp5md.dll": 1, "liblist.pl": 1, "liblist.pl.bak": 1, - "libnetcfg": 1751, - "libpng-config": 5997, - "libpng16-config": 5997, + "libnetcfg": 1752, + "libpng-config": 6008, + "libpng16-config": 6008, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15924,7 +15936,7 @@ "linearfold": 1, "linearpartition": 1, "lingenome": 1, - "linguist": 260, + "linguist": 262, "linguist-qt4": 3, "linguist6": 3, "linguistic_sequence_complexity.py": 1, @@ -15933,7 +15945,7 @@ "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 1078, + "linkicc": 1081, "linknets": 2, "links2sql.pl": 7, "linksBed": 281, @@ -16167,7 +16179,7 @@ "lp_solve": 15, "lpconvert": 1, "lpp_assign_leaflets": 1, - "lprodump": 50, + "lprodump": 52, "lprsetup.sh": 106, "lpython": 3, "lq_adapt.py": 1, @@ -16182,8 +16194,8 @@ "lq_utils.py": 1, "lr2gene.pl": 1, "lra": 2, - "lrelease": 260, - "lrelease-pro": 50, + "lrelease": 262, + "lrelease-pro": 52, "lrelease-qt4": 3, "lrge": 1, "lrsim": 1, @@ -16214,8 +16226,8 @@ "lsmem": 13, "lsns": 13, "lss3": 29, - "lstopo": 99, - "lstopo-no-graphics": 99, + "lstopo": 100, + "lstopo-no-graphics": 100, "ltqnorm.pl": 1, "ltqnorm.pl.bak": 1, "ltr_finder": 3, @@ -16240,8 +16252,8 @@ "lumpy_filter": 2, "lumpyexpress": 2, "lumpyexpress.config": 2, - "lupdate": 260, - "lupdate-pro": 50, + "lupdate": 262, + "lupdate-pro": 52, "lupdate-qt4": 3, "lusstr": 1, "lut_pdiffCI.dat": 4, @@ -16253,21 +16265,21 @@ "lwp-request": 200, "lyner": 1, "lz-ani": 1, - "lz4": 3555, + "lz4": 3557, "lz4_decompress": 2, - "lz4c": 3554, - "lz4cat": 3554, - "lzcat": 7750, - "lzcmp": 7750, - "lzdiff": 7750, - "lzegrep": 7750, - "lzfgrep": 7750, - "lzgrep": 7750, - "lzless": 7750, - "lzma": 7750, - "lzmadec": 7750, - "lzmainfo": 7750, - "lzmore": 7750, + "lz4c": 3556, + "lz4cat": 3556, + "lzcat": 7760, + "lzcmp": 7760, + "lzdiff": 7760, + "lzegrep": 7760, + "lzfgrep": 7760, + "lzgrep": 7760, + "lzless": 7760, + "lzma": 7760, + "lzmadec": 7760, + "lzmainfo": 7760, + "lzmore": 7760, "lzop_build_offset_table.py": 60, "m-party": 1, "m-tx": 1, @@ -16428,7 +16440,7 @@ "main_html_generator.py": 1, "makblk.pl": 4, "makdbs": 4, - "make": 4183, + "make": 4190, "make-barcodes.awk": 1, "make-cluster.R": 1, "make-conf": 2, @@ -16585,7 +16597,7 @@ "makechimeras.sh": 31, "makeclusterdb": 5, "makecontaminatedgenomes.sh": 31, - "makeconv": 5939, + "makeconv": 5952, "makedtx": 1, "makefasta.awk": 1, "makegeo": 39, @@ -16707,8 +16719,8 @@ "mapula": 1, "mapview": 46, "mapviewToBed.pl": 1, - "maq2sam-long": 537, - "maq2sam-short": 537, + "maq2sam-long": 538, + "maq2sam-short": 538, "mareymaps_untrimmed.smk": 1, "marge": 1, "margin_cons": 2, @@ -16953,9 +16965,9 @@ "md5cp.2.11.0": 10, "md5cp.3": 2, "md5cp.3.0.0": 2, - "md5fa": 537, + "md5fa": 538, "md5sum": 86, - "md5sum-lite": 537, + "md5sum-lite": 538, "md_coords": 12, "mda_hole": 1, "mdasim": 1, @@ -17228,7 +17240,7 @@ "meryl-simple": 5, "merylqury2analysis.py": 1, "mesg": 13, - "meshdebug": 50, + "meshdebug": 52, "mess": 1, "message-count": 2, "message-extract": 2, @@ -17279,7 +17291,7 @@ "metadata_conda_debug.yaml": 32, "metadata_merger.py": 1, "metaeuk": 5, - "metaflac": 54, + "metaflac": 56, "metagene": 3, "metagenome_pipeline.py": 1, "metagenomics": 1, @@ -17609,7 +17621,7 @@ "mlst_download_functions.jl": 2, "mltree": 1, "mm-alignments.pl": 1, - "mm2gv": 203, + "mm2gv": 204, "mm2plus": 1, "mm2plus.avx": 1, "mm2plus.avx2": 1, @@ -17645,7 +17657,7 @@ "mobster": 1, "mobster-to-vcf": 1, "mobsuiteRepresentativeFasta.pl": 2, - "moc": 260, + "moc": 262, "moc-qt4": 3, "moca": 1, "mock-cwl-runner": 3, @@ -17767,27 +17779,28 @@ "mpest": 1, "mpfp++": 1, "mpfp++64": 1, - "mpg123": 39, - "mpg123-id3dump": 39, - "mpg123-strip": 39, + "mpg123": 41, + "mpg123-id3dump": 41, + "mpg123-strip": 41, "mpi.pl": 1, - "mpiCC": 77, - "mpic++": 92, + "mpiCC": 78, + "mpic++": 93, "mpicalc": 40, - "mpicc": 92, + "mpicc": 93, "mpich2version": 1, "mpichversion": 14, - "mpicxx": 92, - "mpiexec": 92, + "mpicxx": 93, + "mpiexec": 93, "mpiexec.hydra": 15, - "mpif77": 92, - "mpif90": 92, - "mpifort": 91, + "mpif77": 93, + "mpif90": 93, + "mpifort": 92, "mpileup2sync": 1, "mpileup2sync.pl": 1, "mpinab2c": 6, "mpire-dashboard": 2, - "mpirun": 92, + "mpirun": 93, + "mpispclust": 1, "mpiswipe": 1, "mpivars": 14, "mpl_utils.py": 1, @@ -17843,24 +17856,24 @@ "mseqtools": 1, "msformatter": 1, "msfragger": 2, - "msgattrib": 5327, - "msgcat": 5327, - "msgcmp": 5327, - "msgcomm": 5327, - "msgconv": 5327, - "msgen": 5327, - "msgexec": 5327, + "msgattrib": 5329, + "msgcat": 5329, + "msgcmp": 5329, + "msgcomm": 5329, + "msgconv": 5329, + "msgen": 5329, + "msgexec": 5329, "msgf2pin": 1, "msgf_plus": 3, - "msgfilter": 5327, - "msgfmt": 5327, + "msgfilter": 5329, + "msgfmt": 5329, "msgfplus_search.rb": 1, - "msggrep": 5327, - "msginit": 5327, - "msgmerge": 5327, + "msggrep": 5329, + "msginit": 5329, + "msgmerge": 5329, "msgserv": 1, - "msgunfmt": 5327, - "msguniq": 5327, + "msgunfmt": 5329, + "msguniq": 5329, "msi": 1, "msi_cluster2reads": 1, "msi_clustr2map.pl": 1, @@ -17989,7 +18002,7 @@ "mupdf-x11": 1, "mupdf-x11-curl": 1, "muraster": 1, - "muscle": 77, + "muscle": 78, "musixflx": 1, "musixtex": 1, "muspinsim": 1, @@ -18129,7 +18142,7 @@ "nasm": 1, "nasp": 1, "native2ascii": 112, - "natsort": 175, + "natsort": 176, "nb-classify": 1, "nb-train": 1, "nbmodel_stan2.py": 1, @@ -18171,9 +18184,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 7224, + "ncurses6-config": 7238, "ncursesw5-config": 703, - "ncursesw6-config": 7225, + "ncursesw6-config": 7239, "ndfes": 1, "ndfes-AvgFESs.py": 1, "ndfes-CheckEquil.py": 1, @@ -18189,7 +18202,7 @@ "ndmetis": 60, "ndx2resttop": 3, "nearblack": 40, - "neato": 203, + "neato": 204, "nebulizer": 1, "necat": 1, "nedbit-features-calculator": 1, @@ -18278,7 +18291,7 @@ "nf-test": 1, "nfe-umbrella-slice": 7, "ngd": 12, - "ngettext": 5327, + "ngettext": 5329, "ngg_barabasi_albert": 2, "ngg_barbell": 2, "ngg_complete": 2, @@ -18288,9 +18301,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4590, - "nghttpd": 4590, - "nghttpx": 4590, + "nghttp": 4601, + "nghttpd": 4601, + "nghttpx": 4601, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -18415,7 +18428,7 @@ "noncoding-trainer.pl": 2, "nonogram": 2, "nonpareil": 1, - "nop": 203, + "nop": 204, "nopilesum": 1, "noreturn": 27, "norm": 1, @@ -18435,7 +18448,7 @@ "normalize_multicov.pl": 1, "normalize_oneD.R": 1, "normalize_table.py": 1, - "normalizer": 524, + "normalizer": 526, "normandcorrectwrapper.sh": 1, "nose2": 1, "nose2-2.7": 1, @@ -18453,7 +18466,7 @@ "noveliso.py": 1, "novo2maq": 1, "novo2paf": 2, - "novo2sam.pl": 538, + "novo2sam.pl": 539, "novoBreak": 1, "novoalign": 2, "novoalign-license-register": 2, @@ -18484,8 +18497,8 @@ "nrex": 1, "nseg": 6, "nsenter": 8, - "nspr-config": 190, - "nss-config": 190, + "nspr-config": 192, + "nss-config": 192, "ntJoin": 2, "ntLink": 3, "ntLink_rounds": 3, @@ -18544,11 +18557,11 @@ "nullarbor.pl": 1, "nulltype_module.py": 1, "numCI": 4, - "numba": 176, + "numba": 177, "number-lines": 1, "numfmt": 86, "numlines": 1, - "numpy-config": 86, + "numpy-config": 88, "nunit-console": 10, "nunit-console2": 10, "nunit-console4": 10, @@ -18788,13 +18801,13 @@ "omero.bat": 3, "omfonts": 1, "omicsdi": 1, - "ompi-clean": 77, + "ompi-clean": 78, "ompi-dvm": 4, "ompi-ps": 4, - "ompi-server": 77, + "ompi-server": 78, "ompi-submit": 1, "ompi-top": 4, - "ompi_info": 77, + "ompi_info": 78, "omssa2pepXML": 1, "omssa_search.rb": 1, "omssacl": 1, @@ -18804,7 +18817,7 @@ "oncotator": 1, "one_field_per_line.py": 60, "onehot2seq": 1, - "onig-config": 313, + "onig-config": 314, "onnxruntime_test": 3, "ontime": 1, "ontocount": 27, @@ -18822,7 +18835,7 @@ "opal.py": 1, "opal_stats.py": 1, "opal_workflow.py": 1, - "opal_wrapper": 77, + "opal_wrapper": 78, "ope": 2, "open-shop": 2, "opencv_annotation": 6, @@ -18835,12 +18848,12 @@ "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 8000, + "openssl": 8014, "opentargets_validator": 1, "operation.py": 1, - "opj_compress": 717, - "opj_decompress": 717, - "opj_dump": 717, + "opj_compress": 719, + "opj_decompress": 719, + "opj_dump": 719, "opl2ofm": 1, "opsin": 1, "opt": 6, @@ -18878,16 +18891,16 @@ "orientagraph": 1, "orienter": 1, "orsum.py": 1, - "orte-clean": 77, + "orte-clean": 78, "orte-dvm": 4, - "orte-info": 77, + "orte-info": 78, "orte-ps": 4, - "orte-server": 77, + "orte-server": 78, "orte-submit": 1, "orte-top": 4, - "ortecc": 77, - "orted": 77, - "orterun": 77, + "ortecc": 78, + "orted": 78, + "orterun": 78, "orthanq": 1, "ortho-latin": 2, "orthofinder": 6, @@ -18917,14 +18930,14 @@ "orthomclSortGroupsFile": 1, "orthomcl_database": 1, "orthomcl_database.py": 1, - "osage": 203, - "oshCC": 48, - "oshc++": 48, - "oshcc": 49, - "oshcxx": 48, - "oshfort": 49, - "oshmem_info": 49, - "oshrun": 49, + "osage": 204, + "oshCC": 49, + "oshc++": 49, + "oshcc": 50, + "oshcxx": 49, + "oshfort": 50, + "oshmem_info": 50, + "oshrun": 50, "osqp_demo": 1, "osqp_tester": 1, "osra": 1, @@ -18939,7 +18952,7 @@ "otu_filters_tpl.html": 1, "otu_range.py": 1, "otu_to_tax_name.py": 1, - "out123": 39, + "out123": 41, "out2summary": 2, "out_to_chain.py": 60, "outocp": 1, @@ -19025,9 +19038,9 @@ "pKiss_subopt_window": 1, "pModel": 6, "pVst": 32, - "pa-info": 51, + "pa-info": 53, "pacBioToCA": 3, - "pacat": 51, + "pacat": 53, "pacbio-correct": 2, "pacbio-correct.3": 2, "pacbio-correct.3.0.0": 2, @@ -19049,9 +19062,10 @@ "packmol": 7, "packmol-memgen": 7, "pacmd": 25, - "pactl": 51, + "pactl": 53, "padaligner": 7, - "padsp": 51, + "padsp": 53, + "paf2chain": 1, "paf2chain.awk": 1, "paf2gfa": 1, "paf2links.pl": 1, @@ -19082,13 +19096,13 @@ "pairtools": 3, "pairwise_comparison": 1, "pal2nal.pl": 9, - "pal2rgb": 5348, + "pal2rgb": 5359, "pal_finder": 1, "paladin": 2, "palindrome": 27, "paltohdf": 130, "pam": 1, - "pamon": 51, + "pamon": 53, "pamp": 73, "panISa.py": 1, "panX.py": 1, @@ -19131,10 +19145,10 @@ "panfeed-plot": 1, "pangenome_variants_to_treeWAS.pl": 1, "pango-collapse": 1, - "pango-list": 4043, + "pango-list": 4053, "pango-querymodules": 10, - "pango-segmentation": 2868, - "pango-view": 4846, + "pango-segmentation": 2878, + "pango-view": 4856, "pangoLEARN": 1, "pango_designation": 1, "pangolearn.smk": 1, @@ -19165,7 +19179,7 @@ "papaa_visualize_decisions.py": 1, "papaa_within_disease_analysis.py": 1, "papermill": 1, - "paplay": 51, + "paplay": 53, "paplot": 1, "par.pl": 1, "paragone": 1, @@ -19215,8 +19229,8 @@ "parcat": 109, "parebrick": 1, "parebrick-charts": 1, - "parec": 51, - "parecord": 51, + "parec": 53, + "parecord": 53, "pargenes-hpc-debug.py": 1, "pargenes-hpc.py": 1, "pargenes.py": 1, @@ -19302,7 +19316,7 @@ "patch-hmm.pl": 2, "patchelf": 3, "patchpos.py": 1, - "patchwork": 203, + "patchwork": 204, "patgen": 1, "path-graph": 1, "path.py": 1, @@ -19390,11 +19404,11 @@ "pcoaPlot.py": 2, "pcor": 1, "pcre-config": 4952, - "pcre2-config": 3779, + "pcre2-config": 3790, "pcre2_jit_test": 3685, - "pcre2grep": 3779, + "pcre2grep": 3790, "pcre2posix_test": 113, - "pcre2test": 3779, + "pcre2test": 3790, "pcregrep": 4952, "pcretest": 4952, "pct2rgb": 1, @@ -19601,7 +19615,7 @@ "perf": 1, "perfect-square": 2, "perform_controls.pl": 1, - "perl": 1751, + "perl": 1752, "perl-doc": 2, "perl-reversion": 9, "perl5.22.0": 55, @@ -19609,12 +19623,12 @@ "perl5.26.2": 369, "perl5.30.3": 5, "perl5.32.0": 64, - "perl5.32.1": 1258, - "perlbug": 1751, - "perldoc": 1751, - "perlivp": 1751, + "perl5.32.1": 1259, + "perlbug": 1752, + "perldoc": 1752, + "perlivp": 1752, "perltex": 1, - "perlthanks": 1751, + "perlthanks": 1752, "permuteGPAT++": 32, "permuteSmooth": 32, "permute_structure.pl": 1, @@ -19657,7 +19671,7 @@ "pg_build_idx": 1, "pg_build_sdb": 1, "pg_checksums": 42, - "pg_config": 159, + "pg_config": 161, "pg_controldata": 48, "pg_ctl": 48, "pg_dedup": 1, @@ -19973,7 +19987,7 @@ "pickle_cat.py": 1, "pickorientation.awk": 1, "pickout": 1, - "piconv": 1751, + "piconv": 1752, "picopore": 1, "picopore-realtime": 1, "picopore-rename": 1, @@ -20012,10 +20026,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3864, + "pip": 3871, "pip2": 1, "pip2.7": 1, - "pip3": 2787, + "pip3": 2794, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 3, @@ -20046,7 +20060,7 @@ "pispino_seqprep": 2, "pivotCSV.py": 1, "pixelator": 1, - "pixeltool": 260, + "pixeltool": 262, "pixeltool-qt4": 3, "pixeltool6": 3, "pizzly": 1, @@ -20054,7 +20068,7 @@ "pizzly_flatten_json.py.bak": 1, "pizzly_get_fragment_length.py": 1, "pizzly_get_fragment_length.py.bak": 1, - "pk12util": 190, + "pk12util": 192, "pk_al": 1, "pk_alignment_length": 1, "pk_alignment_length_no_gaps": 1, @@ -20168,13 +20182,13 @@ "pkfix-helper": 1, "pkg-config": 78, "pkg-config.bin": 78, - "pkgdata": 5939, + "pkgdata": 5952, "pkginfo": 11, "pkill": 1, "pktogf": 1, "pktype": 1, "pl2bat.pl": 6, - "pl2pm": 1751, + "pl2pm": 1752, "plaScope.sh": 1, "plac_runner.py": 70, "place_orient1.smk": 1, @@ -20212,8 +20226,8 @@ "plip": 1, "plncpro": 1, "plncpro_format_ff.sh": 1, - "plot-ampliconstats": 341, - "plot-bamstats": 537, + "plot-ampliconstats": 342, + "plot-bamstats": 538, "plot-bmprobs": 4, "plot-cnv": 1, "plot-insert-size-distribution": 2, @@ -20375,22 +20389,22 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 5997, + "png-fix-itxt": 6008, "pngcp": 89, - "pngfix": 5997, - "pngtogd": 243, - "pngtogd2": 243, + "pngfix": 6008, + "pngtogd": 246, + "pngtogd2": 246, "pnps-gen": 1, "poa": 24, "pocheck": 1, "poclcc": 3, - "pod2html": 1751, - "pod2man": 1751, - "pod2text": 1751, - "pod2usage": 1751, + "pod2html": 1752, + "pod2man": 1752, + "pod2text": 1752, + "pod2usage": 1752, "pod5": 1, "pod_cover": 12, - "podchecker": 1751, + "podchecker": 1752, "podselect": 438, "poetry": 7, "pointwise_datasets_concatenator.py": 1, @@ -20426,6 +20440,7 @@ "popdel": 1, "popera": 1, "popera_dhs_count": 1, + "popins2": 1, "popmap2pedigree": 1, "poppunk": 1, "poppunk_add_weights.py": 1, @@ -20498,7 +20513,7 @@ "ppi2html": 2, "pplacer": 22, "ppltotf": 1, - "ppm2tiff": 5348, + "ppm2tiff": 5359, "pprodigal": 2, "pprof": 2, "pprof-symbolize": 1, @@ -20720,7 +20735,7 @@ "prody": 3, "prody_anm": 1, "prof2class": 1, - "profile2mat.pl": 76, + "profile2mat.pl": 77, "profile2seq.pl": 5, "profileCLs.py": 1, "profileGottcha.pl": 1, @@ -20845,7 +20860,7 @@ "protmapper": 1, "protobuf-net.dll": 2, "protobuf-net.xml": 2, - "protoc": 294, + "protoc": 295, "protoc-23.1.0": 1, "protoc-23.3.0": 4, "protoc-23.4.0": 6, @@ -20855,7 +20870,7 @@ "protoc-25.2.0": 2, "protoc-25.3.0": 32, "protoc-27.5.0": 5, - "protoc-28.2.0": 1, + "protoc-28.2.0": 2, "protoc-gen-grpclib_python": 1, "protoc-gen-mypy": 1, "protoc-gen-mypy_grpc": 1, @@ -20883,14 +20898,14 @@ "protxml_to_table.rb": 1, "prov-compare": 9, "prov-convert": 9, - "prove": 1751, + "prove": 1752, "provean": 1, "provean.sh": 1, "provis": 1, "prox10x.awk": 1, "prt_terms.py": 9, "prun": 3, - "prune": 203, + "prune": 204, "prune-ali.pl": 1, "prune-tree.pl": 1, "prune.awk": 1, @@ -20917,6 +20932,7 @@ "pscan.x": 1, "psdm": 2, "psearch": 3, + "pseqsid": 1, "pseudo_it.py": 1, "pseudoknot_analyzer.py": 2, "pseudoreverseDB.py": 1, @@ -20932,7 +20948,7 @@ "psiblast": 352, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 1078, + "psicc": 1081, "psiclass": 1, "psiphi": 27, "psirc": 1, @@ -20945,7 +20961,7 @@ "psl2bed-float128": 15, "psl2bed-megarow": 15, "psl2bed-typical": 15, - "psl2sam.pl": 537, + "psl2sam.pl": 538, "psl2starch": 15, "psl2starch-float128": 15, "psl2starch-megarow": 15, @@ -20990,9 +21006,9 @@ "pt2to3": 77, "ptGAUL.sh": 1, "ptangle": 1, - "ptar": 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"pyrsa-decrypt-bigfile": 12, - "pyrsa-encrypt": 159, + "pyrsa-encrypt": 160, "pyrsa-encrypt-bigfile": 12, - "pyrsa-keygen": 159, - "pyrsa-priv2pub": 159, - "pyrsa-sign": 159, - "pyrsa-verify": 159, + "pyrsa-keygen": 160, + "pyrsa-priv2pub": 160, + "pyrsa-sign": 160, + "pyrsa-verify": 160, "pysamstats": 4, "pysassc": 1, "pyscenic": 1, @@ -21310,32 +21326,32 @@ "pytest": 151, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3864, - "python-argcomplete-check-easy-install-script": 350, + "python": 3871, + "python-argcomplete-check-easy-install-script": 351, "python-argcomplete-tcsh": 191, "python-build": 3, - "python-config": 334, - "python2": 333, + "python-config": 335, + "python2": 334, "python2-config": 316, "python2.5": 1, "python2.5-config": 1, - "python2.7": 333, + "python2.7": 334, "python2.7-config": 316, - "python3": 3531, - "python3-config": 3530, - "python3.1": 1453, - "python3.10": 839, - "python3.10-config": 839, + "python3": 3537, + "python3-config": 3536, + "python3.1": 1459, + "python3.10": 840, + "python3.10-config": 840, "python3.11": 286, "python3.11-config": 286, - "python3.12": 303, - "python3.12-config": 303, - "python3.13": 25, - "python3.13-config": 25, - "python3.4": 6, - "python3.4-config": 6, - "python3.4m": 6, - "python3.4m-config": 6, + "python3.12": 305, + "python3.12-config": 305, + "python3.13": 28, + "python3.13-config": 28, + "python3.4": 5, + "python3.4-config": 5, + "python3.4m": 5, + "python3.4m-config": 5, "python3.5": 103, "python3.5-config": 103, "python3.5m": 103, @@ -21350,8 +21366,8 @@ "python3.7m-config": 383, "python3.8": 580, "python3.8-config": 580, - "python3.9": 661, - "python3.9-config": 661, + "python3.9": 662, + "python3.9-config": 662, "pythonsh": 2, "pythontex": 1, "pytleap": 6, @@ -21361,8 +21377,8 @@ "pyuic4": 8, "pyuic5": 222, "pyutilib_test_driver": 3, - "pyvenv": 836, - "pyvenv-3.4": 6, + "pyvenv": 835, + "pyvenv-3.4": 5, "pyvenv-3.5": 103, "pyvenv-3.6": 344, "pyvenv-3.7": 383, @@ -21386,70 +21402,70 @@ "qcat-roc": 2, "qcli_make_rst": 3, "qcli_make_script": 3, - "qcollectiongenerator": 260, + "qcollectiongenerator": 262, "qcollectiongenerator-qt4": 3, - "qconvex": 65, + "qconvex": 66, "qcp": 2, "qcreporter.py": 1, "qcs": 2, "qd-config": 3, - "qdbus": 258, + "qdbus": 260, "qdbus-qt4": 3, "qdbus6": 3, - "qdbuscpp2xml": 258, + "qdbuscpp2xml": 260, "qdbuscpp2xml-qt4": 3, - "qdbusviewer": 258, + "qdbusviewer": 260, "qdbusviewer-qt4": 3, "qdbusviewer6": 3, - "qdbusxml2cpp": 258, + "qdbusxml2cpp": 260, "qdbusxml2cpp-qt4": 3, - "qdelaunay": 65, - "qdistancefieldgenerator": 144, + "qdelaunay": 66, + "qdistancefieldgenerator": 146, "qdistancefieldgenerator6": 3, - "qdoc": 231, + "qdoc": 233, "qdoc3": 9, "qdoc3-qt4": 3, "qdoc6": 3, "qfilt": 1, "qfy.py": 1, - "qgltf": 192, + "qgltf": 194, "qgrs": 1, - "qhalf": 65, + "qhalf": 66, "qhelpconverter": 116, "qhelpconverter-qt4": 3, - "qhelpgenerator": 260, + "qhelpgenerator": 262, "qhelpgenerator-qt4": 3, "qhery": 1, - "qhull": 65, + "qhull": 66, "qiime2lefse.py": 1, "qiimeToMaaslin.py": 1, "qiskit-xyz2pdb": 1, - "qlalr": 251, - "qmake": 260, + "qlalr": 253, + "qmake": 262, "qmake-qt4": 3, "qmake6": 3, "qmer-filter": 2, - "qml": 251, + "qml": 253, "qml.py": 2, "qml6": 3, - "qmlcachegen": 192, - "qmleasing": 251, + "qmlcachegen": 194, + "qmleasing": 253, "qmleasing6": 3, - "qmlformat": 50, - "qmlimportscanner": 251, - "qmllint": 251, + "qmlformat": 52, + "qmlimportscanner": 253, + "qmllint": 253, "qmlls6": 3, - "qmlmin": 251, - "qmlplugindump": 260, + "qmlmin": 253, + "qmlplugindump": 262, "qmlplugindump-qt4": 3, - "qmlpreview": 144, + "qmlpreview": 146, "qmlpreview6": 3, - "qmlprofiler": 251, - "qmlscene": 251, + "qmlprofiler": 253, + "qmlscene": 253, "qmlscene6": 3, - "qmltestrunner": 251, - "qmltime": 50, - "qmltyperegistrar": 50, + "qmltestrunner": 253, + "qmltime": 52, + "qmltyperegistrar": 52, "qmlviewer": 9, "qmlviewer-qt4": 3, "qnorm": 5, @@ -21475,27 +21491,27 @@ "qpt_conv": 1, "qs": 2, "qscores_from_summary": 1, - "qscxmlc": 192, + "qscxmlc": 194, "qseq2fasta.pl": 3, "qseq2fasta.pl.bak": 1, "qseq2fastq.pl": 8, "qseq2fastq.pl.bak": 1, "qsignature": 1, - "qt.conf": 262, + "qt.conf": 264, "qt3to4": 9, "qt3to4-qt4": 3, "qt6.conf": 3, - "qtattributionsscanner": 192, + "qtattributionsscanner": 194, "qtconfig": 9, "qtconfig-qt4": 3, - "qtdiag": 251, + "qtdiag": 253, "qtdiag6": 3, "qtip": 1, "qtlplot": 1, "qtlseq": 1, "qtofpeakpicker": 1, - "qtpaths": 251, - "qtplugininfo": 251, + "qtpaths": 253, + "qtplugininfo": 253, "qtplugininfo6": 3, "qtpy": 6, "qtpy2cpp.py": 2, @@ -21507,7 +21523,7 @@ "qual-recalib-stat.3.0.0": 2, "qual_offset.py": 2, "qual_trim.py": 2, - "qualfa2fq.pl": 163, + "qualfa2fq.pl": 164, "qualimap": 3, "qualitativeEvaluation.py": 1, "qualityScores": 6, @@ -21566,8 +21582,8 @@ "qvina2_split": 1, "qvinaw": 1, "qvinaw_split": 1, - "qvkgen": 144, - "qvoronoi": 65, + "qvkgen": 146, + "qvoronoi": 66, "qwebengine_convert_dict": 142, "r-seurat-scripts-post-install-tests.bats": 2, "r-seurat-scripts-post-install-tests.sh": 2, @@ -21679,7 +21695,7 @@ "ratt": 2, "rav1e": 13, "raven": 4, - "raw2tiff": 5348, + "raw2tiff": 5359, "raw_n50": 10, "raw_n50.o": 10, "raw_vcf_parse.py": 1, @@ -21707,14 +21723,14 @@ "rbhtfinder": 1, "rblist": 2, "rbmoegrid": 2, - "rbox": 65, + "rbox": 66, "rbpbench": 1, "rbrms": 1, "rbs": 9, "rbt": 1, "rc_gnu.py": 1, "rc_s.py": 1, - "rcc": 260, + "rcc": 262, "rcc-qt4": 3, "rcexplain": 23, "rcexplain.2": 18, @@ -21749,7 +21765,7 @@ "rdfgraphisomorphism": 34, "rdfpipe": 34, "rdfs2dot": 34, - "rdjpgcom": 5878, + "rdjpgcom": 5889, "rdkit2fps": 1, "rdma_client": 25, "rdma_server": 25, @@ -21851,7 +21867,7 @@ "recgraph": 1, "reciprocal_blast_local": 1, "reciprocal_blast_local.py": 1, - "recode-sr-latin": 5327, + "recode-sr-latin": 5329, "recode_dir": 1, "recode_dir_legacy": 1, "recoder": 27, @@ -21945,7 +21961,7 @@ "refseqget": 27, "refseqsplit.py": 2, "regenie": 1, - "register-python-argcomplete": 350, + "register-python-argcomplete": 351, "regression_neural_network": 1, "regression_predict": 1, "regtools": 1, @@ -22164,7 +22180,7 @@ "repair_run_summary.rb": 1, "repaq": 1, "reparation.pl": 1, - "repc": 192, + "repc": 194, "repeat-match": 58, "repeatoire": 4, "repfind.pl": 3, @@ -22224,7 +22240,7 @@ "reseek": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7931, + "reset": 7945, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -22372,7 +22388,7 @@ "rmdir": 86, "rmic": 423, "rmid": 423, - "rmiregistry": 556, + "rmiregistry": 557, "rmkdepend": 1, "rmlst-api": 1, "rmsk2bed": 15, @@ -22569,7 +22585,7 @@ "rstpep2html.py": 185, "rstream": 25, "rsv-typer": 1, - "rsvg-convert": 171, + "rsvg-convert": 172, "rsync": 29, "rsync-ssl": 27, "rtags": 1, @@ -22954,7 +22970,7 @@ "sam2starch-float128": 15, "sam2starch-megarow": 15, "sam2starch-typical": 15, - "sam2vcf.pl": 537, + "sam2vcf.pl": 538, "samFLAGinfo.pl": 1, "samFilter": 1, "samMap.pl": 15, @@ -23014,8 +23030,8 @@ "samtoh5": 1, "samtom4": 1, "samtom5_dir": 1, - "samtools": 562, - "samtools.pl": 537, + "samtools": 563, + "samtools.pl": 538, "samtools_0.1.18": 3, "samtools_mpileup_to_var": 1, "samtoroc.sh": 31, @@ -23147,7 +23163,7 @@ "scancel-range": 1, "scancel_range.py": 1, "scandeps.pl": 2, - "scanpy": 61, + "scanpy": 62, "scanpy-cli": 1, "scanpy-filter-cells": 1, "scanpy-filter-genes": 1, @@ -23188,7 +23204,7 @@ "sccaf-assess-merger": 1, "sccaf-regress-out": 1, "sccaller": 1, - "sccmap": 203, + "sccmap": 204, "sccmec": 1, "scelestial": 1, "scelestial-synthesis": 1, @@ -23220,7 +23236,7 @@ "scitokens-test-access": 1, "scitokens-verify": 1, "sclass.X86_64.LINUX": 1, - "sclient": 5938, + "sclient": 5951, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -23349,7 +23365,7 @@ "secondary2split.py": 1, "sectosupp": 1, "secutil": 16, - "sed": 3967, + "sed": 3974, "seealso": 27, "seedRand.py": 1, "seedme": 1, @@ -23422,7 +23438,7 @@ "selectreads": 1, "selectsites": 1, "selene_sdk": 1, - "selenium-manager": 1, + "selenium-manager": 2, "selscan": 1, "sem": 109, "send2trash": 22, @@ -23450,7 +23466,7 @@ "seq2onehot": 1, "seq2profile.pl": 5, "seq2science": 2, - "seq_cache_populate.pl": 537, + "seq_cache_populate.pl": 538, "seq_count": 2, "seq_diff": 1, "seq_download.py": 2, @@ -23526,11 +23542,12 @@ "seqyclean": 1, "serialize_hmm_models": 1, "serialize_kofam_models": 1, - "serialver": 556, + "serialver": 557, "seroba": 1, "serotypefinder": 1, "servertell": 27, "servertool": 117, + "seshat": 1, "setStopCodonFreqs.pl": 13, "setTableDefaults.py": 5, "set_finder": 1, @@ -23538,7 +23555,7 @@ "set_source_column.py": 2, "setarch": 13, "setcover": 1, - "setfattr": 51, + "setfattr": 53, "setnum2id": 1, "setpythonpath.bat": 3, "setreg": 16, @@ -23592,7 +23609,7 @@ "severus": 1, "sexdeterrmine": 1, "sexp-conv": 33, - "sfdp": 203, + "sfdp": 204, "sfetch": 4, "sff-dump": 23, "sff-dump.2": 18, @@ -23659,7 +23676,7 @@ "sharq.3": 2, "sharq.3.0.0": 2, 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"x86_64-conda_cos6-linux-gnu-strings": 4180, + "x86_64-conda_cos6-linux-gnu-strip": 4180, "x86_64-conda_cos7-linux-gnu-ld": 24, "x86_64-unknown-linux-gnu-pkg-config": 1, - "xa2multi.pl": 163, + "xa2multi.pl": 164, "xaLeap": 7, "xam_coverage_bins.pl": 2, "xander_customized_hmmer_version_for_prepare_gene.sh": 1, @@ -27018,12 +27040,12 @@ "xgboost": 31, "xgboost.dll": 1, "xgboost.lib": 1, - "xgettext": 5327, + "xgettext": 5329, "xgui": 2, "xhmm": 1, "xinteract": 2, "xjc": 117, - "xkbcli": 105, + "xkbcli": 107, "xleap": 7, "xlsx2json.py": 1, "xmatchview-conifer.py": 1, @@ -27032,7 +27054,7 @@ "xmfa2maf": 4, "xmfa2maf.pl": 1, "xml": 1, - "xml2-config": 5470, + "xml2-config": 5475, "xml2-config.bak": 34, "xml2dcm": 1, "xml2dsr": 1, @@ -27045,17 +27067,17 @@ "xml_spellcheck": 64, "xml_split": 64, "xml_to_bas.pl": 3, - "xmlcatalog": 5470, + "xmlcatalog": 5475, "xmlget": 23, "xmlindent": 1, - "xmllint": 5470, - "xmlpatterns": 258, + "xmllint": 5475, + "xmlpatterns": 260, "xmlpatterns-qt4": 3, - 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b/quay.io/biocontainers/b/bindashtree:0.1.0--h3ab6199_0.json new file mode 100644 index 0000000..af83e31 --- /dev/null +++ b/quay.io/biocontainers/b/bindashtree:0.1.0--h3ab6199_0.json @@ -0,0 +1,3 @@ +{ + "bindashtree": "/usr/local/bin/bindashtree" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-alphamissenser:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-alphamissenser:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-alphamissenser:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": 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"/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-anvilaz:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-anvilaz:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-anvilaz:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-anvilbase:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-anvilbase:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-anvilbase:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-anvilgcp:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-anvilgcp:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-anvilgcp:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-assorthead:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-assorthead:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..a8e60de --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-assorthead:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,223 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-ath1121501frmavecs:1.0.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-ath1121501frmavecs:1.0.0--r44hdfd78af_0.json new file mode 100644 index 0000000..2a8024e --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-ath1121501frmavecs:1.0.0--r44hdfd78af_0.json @@ -0,0 +1,222 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh", + "jpegtran": "/usr/local/bin/jpegtran", + "jq": "/usr/local/bin/jq", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "onig-config": "/usr/local/bin/onig-config", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + 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"toe": "/usr/local/bin/toe", + "tomlq": "/usr/local/bin/tomlq", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xq": "/usr/local/bin/xq", + "yq": "/usr/local/bin/yq", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/b/bioconductor-biocroxytest:1.2.0--r44hdfd78af_0.json b/quay.io/biocontainers/b/bioconductor-biocroxytest:1.2.0--r44hdfd78af_0.json new file mode 100644 index 0000000..7ec934c --- /dev/null +++ b/quay.io/biocontainers/b/bioconductor-biocroxytest:1.2.0--r44hdfd78af_0.json @@ -0,0 +1,226 @@ +{ + "R": "/usr/local/bin/R", + "Rscript": "/usr/local/bin/Rscript", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl": "/usr/local/bin/curl", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "make": "/usr/local/bin/make", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sed": "/usr/local/bin/sed", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-f95": "/usr/local/bin/x86_64-conda-linux-gnu-f95", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda-linux-gnu-gfortran", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-f95": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-f95", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/c/chain2paf:0.1.1--h3ab6199_0.json b/quay.io/biocontainers/c/chain2paf:0.1.1--h3ab6199_0.json new file mode 100644 index 0000000..dde7dc1 --- /dev/null +++ b/quay.io/biocontainers/c/chain2paf:0.1.1--h3ab6199_0.json @@ -0,0 +1,3 @@ +{ + "chain2paf": "/usr/local/bin/chain2paf" +} \ No newline at end of file diff --git a/quay.io/biocontainers/e/echidna:1.0.2--pyhdfd78af_0.json b/quay.io/biocontainers/e/echidna:1.0.2--pyhdfd78af_0.json new file mode 100644 index 0000000..4791392 --- /dev/null +++ b/quay.io/biocontainers/e/echidna:1.0.2--pyhdfd78af_0.json @@ -0,0 +1,287 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "acyclic": "/usr/local/bin/acyclic", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annotate": "/usr/local/bin/annotate", + "bcomps": "/usr/local/bin/bcomps", + "bdftogd": "/usr/local/bin/bdftogd", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "ccomps": "/usr/local/bin/ccomps", + "circo": "/usr/local/bin/circo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "cluster": "/usr/local/bin/cluster", + "compile_et": "/usr/local/bin/compile_et", + "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx", + "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2", + "curl-config": "/usr/local/bin/curl-config", + "delaunay": "/usr/local/bin/delaunay", + "derb": "/usr/local/bin/derb", + "diffimg": "/usr/local/bin/diffimg", + "dijkstra": "/usr/local/bin/dijkstra", + "djpeg": "/usr/local/bin/djpeg", + "dot": "/usr/local/bin/dot", + "dot2gxl": "/usr/local/bin/dot2gxl", + "dot_builtins": "/usr/local/bin/dot_builtins", + "edgepaint": "/usr/local/bin/edgepaint", + "f2py": "/usr/local/bin/f2py", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "fdp": "/usr/local/bin/fdp", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "gc": "/usr/local/bin/gc", + "gd2copypal": "/usr/local/bin/gd2copypal", + "gd2togif": "/usr/local/bin/gd2togif", + "gd2topng": "/usr/local/bin/gd2topng", + "gdcmpgif": "/usr/local/bin/gdcmpgif", + "gdk-pixbuf-csource": "/usr/local/bin/gdk-pixbuf-csource", + "gdk-pixbuf-pixdata": "/usr/local/bin/gdk-pixbuf-pixdata", + "gdk-pixbuf-query-loaders": "/usr/local/bin/gdk-pixbuf-query-loaders", + "gdk-pixbuf-thumbnailer": "/usr/local/bin/gdk-pixbuf-thumbnailer", + "gdparttopng": "/usr/local/bin/gdparttopng", + "gdtopng": "/usr/local/bin/gdtopng", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2h5": "/usr/local/bin/gif2h5", + "giftogd2": "/usr/local/bin/giftogd2", + "glpsol": "/usr/local/bin/glpsol", + "gml2gv": "/usr/local/bin/gml2gv", + "graphml2gv": "/usr/local/bin/graphml2gv", + "gss-client": "/usr/local/bin/gss-client", + "gtk-builder-convert": "/usr/local/bin/gtk-builder-convert", + "gtk-demo": "/usr/local/bin/gtk-demo", + "gtk-query-immodules-2.0": "/usr/local/bin/gtk-query-immodules-2.0", + "gts-config": "/usr/local/bin/gts-config", + "gts2dxf": "/usr/local/bin/gts2dxf", + "gts2oogl": "/usr/local/bin/gts2oogl", + "gts2stl": "/usr/local/bin/gts2stl", + "gtscheck": "/usr/local/bin/gtscheck", + "gtscompare": "/usr/local/bin/gtscompare", + "gtstemplate": "/usr/local/bin/gtstemplate", + "gv2gml": "/usr/local/bin/gv2gml", + "gv2gxl": "/usr/local/bin/gv2gxl", + "gvcolor": "/usr/local/bin/gvcolor", + "gvgen": "/usr/local/bin/gvgen", + "gvmap": "/usr/local/bin/gvmap", + "gvmap.sh": "/usr/local/bin/gvmap.sh", + "gvpack": "/usr/local/bin/gvpack", + "gvpr": "/usr/local/bin/gvpr", + "gxl2dot": "/usr/local/bin/gxl2dot", + "gxl2gv": "/usr/local/bin/gxl2gv", + "h52gif": "/usr/local/bin/h52gif", + "h5c++": "/usr/local/bin/h5c++", + "h5cc": "/usr/local/bin/h5cc", + "h5clear": "/usr/local/bin/h5clear", + "h5copy": "/usr/local/bin/h5copy", + "h5debug": "/usr/local/bin/h5debug", + "h5delete": "/usr/local/bin/h5delete", + "h5diff": "/usr/local/bin/h5diff", + "h5dump": "/usr/local/bin/h5dump", + "h5fc": "/usr/local/bin/h5fc", + "h5format_convert": "/usr/local/bin/h5format_convert", + "h5fuse.sh": "/usr/local/bin/h5fuse.sh", + "h5import": "/usr/local/bin/h5import", + "h5jam": "/usr/local/bin/h5jam", + "h5ls": "/usr/local/bin/h5ls", + "h5mkgrp": "/usr/local/bin/h5mkgrp", + "h5perf_serial": "/usr/local/bin/h5perf_serial", + "h5redeploy": "/usr/local/bin/h5redeploy", + "h5repack": "/usr/local/bin/h5repack", + "h5repart": "/usr/local/bin/h5repart", + "h5stat": "/usr/local/bin/h5stat", + "h5tools_test_utils": "/usr/local/bin/h5tools_test_utils", + "h5unjam": "/usr/local/bin/h5unjam", + "h5watch": "/usr/local/bin/h5watch", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "igraph": "/usr/local/bin/igraph", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "isympy": "/usr/local/bin/isympy", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "makeconv": "/usr/local/bin/makeconv", + "mm2gv": "/usr/local/bin/mm2gv", + "natsort": "/usr/local/bin/natsort", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "neato": "/usr/local/bin/neato", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "nop": "/usr/local/bin/nop", + "normalizer": "/usr/local/bin/normalizer", + "numba": "/usr/local/bin/numba", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "osage": "/usr/local/bin/osage", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "patchwork": "/usr/local/bin/patchwork", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "pngtogd": "/usr/local/bin/pngtogd", + "pngtogd2": "/usr/local/bin/pngtogd2", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "protoc": "/usr/local/bin/protoc", + "protoc-28.2.0": "/usr/local/bin/protoc-28.2.0", + "prune": "/usr/local/bin/prune", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "qconvex": "/usr/local/bin/qconvex", + "qdelaunay": "/usr/local/bin/qdelaunay", + "qhalf": "/usr/local/bin/qhalf", + "qhull": "/usr/local/bin/qhull", + "qvoronoi": "/usr/local/bin/qvoronoi", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rbox": "/usr/local/bin/rbox", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "rsvg-convert": "/usr/local/bin/rsvg-convert", + "scanpy": "/usr/local/bin/scanpy", + "sccmap": "/usr/local/bin/sccmap", + "sclient": "/usr/local/bin/sclient", + "sfdp": "/usr/local/bin/sfdp", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "stl2gts": "/usr/local/bin/stl2gts", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "torch_shm_manager": "/usr/local/bin/torch_shm_manager", + "torchfrtrace": "/usr/local/bin/torchfrtrace", + "torchrun": "/usr/local/bin/torchrun", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transform": "/usr/local/bin/transform", + "transicc": "/usr/local/bin/transicc", + "tred": "/usr/local/bin/tred", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "twopi": "/usr/local/bin/twopi", + "unflatten": "/usr/local/bin/unflatten", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "webpng": "/usr/local/bin/webpng", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/e/equirep:1.0.0--h9948957_0.json b/quay.io/biocontainers/e/equirep:1.0.0--h9948957_0.json new file mode 100644 index 0000000..12f165c --- /dev/null +++ b/quay.io/biocontainers/e/equirep:1.0.0--h9948957_0.json @@ -0,0 +1,3 @@ +{ + "EquiRep": "/usr/local/bin/EquiRep" +} \ No newline at end of file diff --git a/quay.io/biocontainers/g/gpatch:0.3.5--pyhdfd78af_0.json b/quay.io/biocontainers/g/gpatch:0.3.5--pyhdfd78af_0.json new file mode 100644 index 0000000..84a5024 --- /dev/null +++ b/quay.io/biocontainers/g/gpatch:0.3.5--pyhdfd78af_0.json @@ -0,0 +1,107 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.12": "/usr/local/bin/2to3-3.12", + "GPatch": "/usr/local/bin/GPatch", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl-config": "/usr/local/bin/curl-config", + "f2py": "/usr/local/bin/f2py", + "gss-client": "/usr/local/bin/gss-client", + "idle3": "/usr/local/bin/idle3", + "idle3.12": "/usr/local/bin/idle3.12", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "numpy-config": "/usr/local/bin/numpy-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.12": "/usr/local/bin/pydoc3.12", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.12": "/usr/local/bin/python3.12", + "python3.12-config": "/usr/local/bin/python3.12-config", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/g/gxf2chrom:0.1.0--h9948957_1.json b/quay.io/biocontainers/g/gxf2chrom:0.1.0--h9948957_1.json new file mode 100644 index 0000000..efa6971 --- /dev/null +++ b/quay.io/biocontainers/g/gxf2chrom:0.1.0--h9948957_1.json @@ -0,0 +1,3 @@ +{ + "gxf2chrom": "/usr/local/bin/gxf2chrom" +} \ No newline at end of file diff --git a/quay.io/biocontainers/m/mcscanx:0.1--h9948957_0.json b/quay.io/biocontainers/m/mcscanx:0.1--h9948957_0.json new file mode 100644 index 0000000..334ea01 --- /dev/null +++ b/quay.io/biocontainers/m/mcscanx:0.1--h9948957_0.json @@ -0,0 +1,5 @@ +{ + "MCScanX": "/usr/local/bin/MCScanX", + "MCScanX_h": "/usr/local/bin/MCScanX_h", + "duplicate_gene_classifier": "/usr/local/bin/duplicate_gene_classifier" +} \ No newline at end of file diff --git a/quay.io/biocontainers/o/occultercut:1.1--h503566f_1.json b/quay.io/biocontainers/o/occultercut:1.1--h503566f_1.json new file mode 100644 index 0000000..d860184 --- /dev/null +++ b/quay.io/biocontainers/o/occultercut:1.1--h503566f_1.json @@ -0,0 +1,318 @@ +{ + "OcculterCut": "/usr/local/bin/OcculterCut", + "annotate": "/usr/local/bin/annotate", + "aserver": "/usr/local/bin/aserver", + "assistant": "/usr/local/bin/assistant", + "attr": "/usr/local/bin/attr", + "autopoint": "/usr/local/bin/autopoint", + "balsam": "/usr/local/bin/balsam", + "bdftogd": "/usr/local/bin/bdftogd", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "canbusutil": "/usr/local/bin/canbusutil", + "captoinfo": "/usr/local/bin/captoinfo", + "certutil": "/usr/local/bin/certutil", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "cups-config": "/usr/local/bin/cups-config", + "dbus-cleanup-sockets": "/usr/local/bin/dbus-cleanup-sockets", + "dbus-daemon": "/usr/local/bin/dbus-daemon", + "dbus-launch": "/usr/local/bin/dbus-launch", + "dbus-monitor": "/usr/local/bin/dbus-monitor", + "dbus-run-session": "/usr/local/bin/dbus-run-session", + "dbus-send": "/usr/local/bin/dbus-send", + "dbus-test-tool": "/usr/local/bin/dbus-test-tool", + "dbus-update-activation-environment": "/usr/local/bin/dbus-update-activation-environment", + "dbus-uuidgen": "/usr/local/bin/dbus-uuidgen", + "derb": "/usr/local/bin/derb", + "designer": "/usr/local/bin/designer", + "djpeg": "/usr/local/bin/djpeg", + "envsubst": "/usr/local/bin/envsubst", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "fixqt4headers.pl": "/usr/local/bin/fixqt4headers.pl", + "flac": "/usr/local/bin/flac", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "gapplication": "/usr/local/bin/gapplication", + "gd2copypal": "/usr/local/bin/gd2copypal", + "gd2togif": "/usr/local/bin/gd2togif", + "gd2topng": "/usr/local/bin/gd2topng", + "gdbus": "/usr/local/bin/gdbus", + "gdbus-codegen": "/usr/local/bin/gdbus-codegen", + "gdcmpgif": "/usr/local/bin/gdcmpgif", + "gdparttopng": "/usr/local/bin/gdparttopng", + "gdtopng": "/usr/local/bin/gdtopng", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "getfattr": "/usr/local/bin/getfattr", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "gi-compile-repository": "/usr/local/bin/gi-compile-repository", + "gi-decompile-typelib": "/usr/local/bin/gi-decompile-typelib", + "gi-inspect-typelib": "/usr/local/bin/gi-inspect-typelib", + "giftogd2": "/usr/local/bin/giftogd2", + "gio": "/usr/local/bin/gio", + "gio-querymodules": "/usr/local/bin/gio-querymodules", + "glib-compile-resources": "/usr/local/bin/glib-compile-resources", + "glib-compile-schemas": "/usr/local/bin/glib-compile-schemas", + "glib-genmarshal": "/usr/local/bin/glib-genmarshal", + "glib-gettextize": "/usr/local/bin/glib-gettextize", + "glib-mkenums": "/usr/local/bin/glib-mkenums", + "gnuplot": "/usr/local/bin/gnuplot", + "gobject-query": "/usr/local/bin/gobject-query", + "gpg-error": "/usr/local/bin/gpg-error", + "gpgrt-config": "/usr/local/bin/gpgrt-config", + "gresource": "/usr/local/bin/gresource", + "gsettings": "/usr/local/bin/gsettings", + "gss-client": "/usr/local/bin/gss-client", + "gst-device-monitor-1.0": "/usr/local/bin/gst-device-monitor-1.0", + "gst-discoverer-1.0": "/usr/local/bin/gst-discoverer-1.0", + "gst-inspect-1.0": "/usr/local/bin/gst-inspect-1.0", + "gst-launch-1.0": "/usr/local/bin/gst-launch-1.0", + "gst-play-1.0": "/usr/local/bin/gst-play-1.0", + "gst-stats-1.0": "/usr/local/bin/gst-stats-1.0", + "gst-typefind-1.0": "/usr/local/bin/gst-typefind-1.0", + "gtester": "/usr/local/bin/gtester", + "gtester-report": "/usr/local/bin/gtester-report", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ippeveprinter": "/usr/local/bin/ippeveprinter", + "ipptool": "/usr/local/bin/ipptool", + "jpegtran": "/usr/local/bin/jpegtran", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "lame": "/usr/local/bin/lame", + "lconvert": "/usr/local/bin/lconvert", + "ldapadd": "/usr/local/bin/ldapadd", + "ldapcompare": "/usr/local/bin/ldapcompare", + "ldapdelete": "/usr/local/bin/ldapdelete", + "ldapexop": "/usr/local/bin/ldapexop", + "ldapmodify": "/usr/local/bin/ldapmodify", + "ldapmodrdn": "/usr/local/bin/ldapmodrdn", + "ldappasswd": "/usr/local/bin/ldappasswd", + "ldapsearch": "/usr/local/bin/ldapsearch", + "ldapurl": "/usr/local/bin/ldapurl", + "ldapvc": "/usr/local/bin/ldapvc", + "ldapwhoami": "/usr/local/bin/ldapwhoami", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linguist": "/usr/local/bin/linguist", + "lprodump": "/usr/local/bin/lprodump", + "lrelease": "/usr/local/bin/lrelease", + "lrelease-pro": "/usr/local/bin/lrelease-pro", + "lupdate": "/usr/local/bin/lupdate", + "lupdate-pro": "/usr/local/bin/lupdate-pro", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "makeconv": "/usr/local/bin/makeconv", + "meshdebug": "/usr/local/bin/meshdebug", + "metaflac": "/usr/local/bin/metaflac", + "moc": "/usr/local/bin/moc", + "mpg123": "/usr/local/bin/mpg123", + "mpg123-id3dump": "/usr/local/bin/mpg123-id3dump", + "mpg123-strip": "/usr/local/bin/mpg123-strip", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": "/usr/local/bin/msgexec", + "msgfilter": "/usr/local/bin/msgfilter", + "msgfmt": "/usr/local/bin/msgfmt", + "msggrep": "/usr/local/bin/msggrep", + "msginit": "/usr/local/bin/msginit", + "msgmerge": "/usr/local/bin/msgmerge", + "msgunfmt": "/usr/local/bin/msgunfmt", + "msguniq": "/usr/local/bin/msguniq", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "ngettext": "/usr/local/bin/ngettext", + "nspr-config": "/usr/local/bin/nspr-config", + "nss-config": "/usr/local/bin/nss-config", + "openssl": "/usr/local/bin/openssl", + "out123": "/usr/local/bin/out123", + "pa-info": "/usr/local/bin/pa-info", + "pacat": "/usr/local/bin/pacat", + "pactl": "/usr/local/bin/pactl", + "padsp": "/usr/local/bin/padsp", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pamon": "/usr/local/bin/pamon", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "paplay": "/usr/local/bin/paplay", + "parec": "/usr/local/bin/parec", + "parecord": "/usr/local/bin/parecord", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pg_config": "/usr/local/bin/pg_config", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pixeltool": "/usr/local/bin/pixeltool", + "pk12util": "/usr/local/bin/pk12util", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "pngtogd": "/usr/local/bin/pngtogd", + "pngtogd2": "/usr/local/bin/pngtogd2", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "qcollectiongenerator": "/usr/local/bin/qcollectiongenerator", + "qdbus": "/usr/local/bin/qdbus", + "qdbuscpp2xml": "/usr/local/bin/qdbuscpp2xml", + "qdbusviewer": "/usr/local/bin/qdbusviewer", + "qdbusxml2cpp": "/usr/local/bin/qdbusxml2cpp", + "qdistancefieldgenerator": "/usr/local/bin/qdistancefieldgenerator", + "qdoc": "/usr/local/bin/qdoc", + "qgltf": "/usr/local/bin/qgltf", + "qhelpgenerator": "/usr/local/bin/qhelpgenerator", + "qlalr": "/usr/local/bin/qlalr", + "qmake": "/usr/local/bin/qmake", + "qml": "/usr/local/bin/qml", + "qmlcachegen": "/usr/local/bin/qmlcachegen", + "qmleasing": "/usr/local/bin/qmleasing", + "qmlformat": "/usr/local/bin/qmlformat", + "qmlimportscanner": "/usr/local/bin/qmlimportscanner", + "qmllint": "/usr/local/bin/qmllint", + "qmlmin": "/usr/local/bin/qmlmin", + "qmlplugindump": "/usr/local/bin/qmlplugindump", + "qmlpreview": "/usr/local/bin/qmlpreview", + "qmlprofiler": "/usr/local/bin/qmlprofiler", + "qmlscene": "/usr/local/bin/qmlscene", + "qmltestrunner": "/usr/local/bin/qmltestrunner", + "qmltime": "/usr/local/bin/qmltime", + "qmltyperegistrar": "/usr/local/bin/qmltyperegistrar", + "qscxmlc": "/usr/local/bin/qscxmlc", + "qt.conf": "/usr/local/bin/qt.conf", + "qtattributionsscanner": "/usr/local/bin/qtattributionsscanner", + "qtdiag": "/usr/local/bin/qtdiag", + "qtpaths": "/usr/local/bin/qtpaths", + "qtplugininfo": "/usr/local/bin/qtplugininfo", + "qvkgen": "/usr/local/bin/qvkgen", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rcc": "/usr/local/bin/rcc", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "repc": "/usr/local/bin/repc", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "setfattr": "/usr/local/bin/setfattr", + "sim_client": "/usr/local/bin/sim_client", + "sndfile-cmp": "/usr/local/bin/sndfile-cmp", + "sndfile-concat": "/usr/local/bin/sndfile-concat", + "sndfile-convert": "/usr/local/bin/sndfile-convert", + "sndfile-deinterleave": "/usr/local/bin/sndfile-deinterleave", + "sndfile-info": "/usr/local/bin/sndfile-info", + "sndfile-interleave": "/usr/local/bin/sndfile-interleave", + "sndfile-metadata-get": "/usr/local/bin/sndfile-metadata-get", + "sndfile-metadata-set": "/usr/local/bin/sndfile-metadata-set", + "sndfile-play": "/usr/local/bin/sndfile-play", + "sndfile-salvage": "/usr/local/bin/sndfile-salvage", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "syncqt.pl": "/usr/local/bin/syncqt.pl", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tracegen": "/usr/local/bin/tracegen", + "tset": "/usr/local/bin/tset", + "uic": "/usr/local/bin/uic", + "unlz4": "/usr/local/bin/unlz4", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "webpng": "/usr/local/bin/webpng", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xgettext": "/usr/local/bin/xgettext", + "xkbcli": "/usr/local/bin/xkbcli", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xmlpatterns": "/usr/local/bin/xmlpatterns", + "xmlpatternsvalidator": "/usr/local/bin/xmlpatternsvalidator", + "xmlwf": "/usr/local/bin/xmlwf", + "yat2m": "/usr/local/bin/yat2m", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/paf2chain:0.1.1--h3ab6199_0.json b/quay.io/biocontainers/p/paf2chain:0.1.1--h3ab6199_0.json new file mode 100644 index 0000000..93ea36c --- /dev/null +++ b/quay.io/biocontainers/p/paf2chain:0.1.1--h3ab6199_0.json @@ -0,0 +1,3 @@ +{ + "paf2chain": "/usr/local/bin/paf2chain" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/popins2:0.13.0--h077b44d_0.json b/quay.io/biocontainers/p/popins2:0.13.0--h077b44d_0.json new file mode 100644 index 0000000..37baa28 --- /dev/null +++ b/quay.io/biocontainers/p/popins2:0.13.0--h077b44d_0.json @@ -0,0 +1,144 @@ +{ + "Bifrost": "/usr/local/bin/Bifrost", + "ace2sam": "/usr/local/bin/ace2sam", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annot-tsv": "/usr/local/bin/annot-tsv", + "bgzip": "/usr/local/bin/bgzip", + "blast2sam.pl": "/usr/local/bin/blast2sam.pl", + "bowtie2sam.pl": "/usr/local/bin/bowtie2sam.pl", + "bunzip2": "/usr/local/bin/bunzip2", + "bwa": "/usr/local/bin/bwa", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "corelist": "/usr/local/bin/corelist", + "cpan": "/usr/local/bin/cpan", + "curl-config": "/usr/local/bin/curl-config", + "enc2xs": "/usr/local/bin/enc2xs", + "encguess": "/usr/local/bin/encguess", + "export2sam.pl": "/usr/local/bin/export2sam.pl", + "fasta-sanitize.pl": "/usr/local/bin/fasta-sanitize.pl", + "gss-client": "/usr/local/bin/gss-client", + "h2ph": "/usr/local/bin/h2ph", + "h2xs": "/usr/local/bin/h2xs", + "htsfile": "/usr/local/bin/htsfile", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "instmodsh": "/usr/local/bin/instmodsh", + "interpolate_sam.pl": "/usr/local/bin/interpolate_sam.pl", + "json_pp": "/usr/local/bin/json_pp", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libnetcfg": "/usr/local/bin/libnetcfg", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "maq2sam-long": "/usr/local/bin/maq2sam-long", + "maq2sam-short": "/usr/local/bin/maq2sam-short", + "md5fa": "/usr/local/bin/md5fa", + "md5sum-lite": "/usr/local/bin/md5sum-lite", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "novo2sam.pl": "/usr/local/bin/novo2sam.pl", + "openssl": "/usr/local/bin/openssl", + "perl": "/usr/local/bin/perl", + "perl5.32.1": "/usr/local/bin/perl5.32.1", + "perlbug": "/usr/local/bin/perlbug", + "perldoc": "/usr/local/bin/perldoc", + "perlivp": "/usr/local/bin/perlivp", + "perlthanks": "/usr/local/bin/perlthanks", + "piconv": "/usr/local/bin/piconv", + "pl2pm": "/usr/local/bin/pl2pm", + "plot-ampliconstats": "/usr/local/bin/plot-ampliconstats", + "plot-bamstats": "/usr/local/bin/plot-bamstats", + "pod2html": "/usr/local/bin/pod2html", + "pod2man": "/usr/local/bin/pod2man", + "pod2text": "/usr/local/bin/pod2text", + "pod2usage": "/usr/local/bin/pod2usage", + "podchecker": "/usr/local/bin/podchecker", + "popins2": "/usr/local/bin/popins2", + "prove": "/usr/local/bin/prove", + "psl2sam.pl": "/usr/local/bin/psl2sam.pl", + "ptar": "/usr/local/bin/ptar", + "ptardiff": "/usr/local/bin/ptardiff", + "ptargrep": "/usr/local/bin/ptargrep", + "qualfa2fq.pl": "/usr/local/bin/qualfa2fq.pl", + "reset": "/usr/local/bin/reset", + "sam2vcf.pl": "/usr/local/bin/sam2vcf.pl", + "samtools": "/usr/local/bin/samtools", + "samtools.pl": "/usr/local/bin/samtools.pl", + "sclient": "/usr/local/bin/sclient", + "seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl", + "shasum": "/usr/local/bin/shasum", + "sickle": "/usr/local/bin/sickle", + "sim_client": "/usr/local/bin/sim_client", + "soap2sam.pl": "/usr/local/bin/soap2sam.pl", + "splain": "/usr/local/bin/splain", + "streamzip": "/usr/local/bin/streamzip", + "tabix": "/usr/local/bin/tabix", + "tabs": "/usr/local/bin/tabs", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wgsim": "/usr/local/bin/wgsim", + "wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl", + "xa2multi.pl": "/usr/local/bin/xa2multi.pl", + "xsubpp": "/usr/local/bin/xsubpp", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zipdetails": "/usr/local/bin/zipdetails", + "zoom2sam.pl": "/usr/local/bin/zoom2sam.pl", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/p/pseqsid:1.0.2--h4349ce8_0.json b/quay.io/biocontainers/p/pseqsid:1.0.2--h4349ce8_0.json new file mode 100644 index 0000000..a00be11 --- /dev/null +++ b/quay.io/biocontainers/p/pseqsid:1.0.2--h4349ce8_0.json @@ -0,0 +1,3 @@ +{ + "pseqsid": "/usr/local/bin/pseqsid" +} \ No newline at end of file diff --git a/quay.io/biocontainers/r/reago:_1.1--py27_0.json b/quay.io/biocontainers/r/reago:_1.1--py27_0.json new file mode 100644 index 0000000..9950f2c --- /dev/null +++ b/quay.io/biocontainers/r/reago:_1.1--py27_0.json @@ -0,0 +1,23 @@ +{ + "2to3": "/usr/local/bin/2to3", + "activate": "/usr/local/bin/activate", + "c_rehash": "/usr/local/bin/c_rehash", + "conda": "/usr/local/bin/conda", + "deactivate": "/usr/local/bin/deactivate", + "easy_install": "/usr/local/bin/easy_install", + "easy_install-2.7": "/usr/local/bin/easy_install-2.7", + "idle": "/usr/local/bin/idle", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pydoc": "/usr/local/bin/pydoc", + "python": "/usr/local/bin/python", + "python-config": "/usr/local/bin/python-config", + "python2": "/usr/local/bin/python2", + "python2.7": "/usr/local/bin/python2.7", + "reago.py": "/usr/local/bin/reago.py", + "smtpd.py": "/usr/local/bin/smtpd.py", + "sqlite3": "/usr/local/bin/sqlite3", + "tclsh8.5": "/usr/local/bin/tclsh8.5", + "wheel": "/usr/local/bin/wheel", + "wish8.5": "/usr/local/bin/wish8.5" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/seshat:0.10.0--py313hdfd78af_0.json b/quay.io/biocontainers/s/seshat:0.10.0--py313hdfd78af_0.json new file mode 100644 index 0000000..2114d89 --- /dev/null +++ b/quay.io/biocontainers/s/seshat:0.10.0--py313hdfd78af_0.json @@ -0,0 +1,191 @@ +{ + "aserver": "/usr/local/bin/aserver", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "captoinfo": "/usr/local/bin/captoinfo", + "chromedriver-path": "/usr/local/bin/chromedriver-path", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "cups-config": "/usr/local/bin/cups-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "freetype-config": "/usr/local/bin/freetype-config", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2rgb": "/usr/local/bin/gif2rgb", + "gifbuild": "/usr/local/bin/gifbuild", + "gifclrmp": "/usr/local/bin/gifclrmp", + "giffix": "/usr/local/bin/giffix", + "giftext": "/usr/local/bin/giftext", + "giftool": "/usr/local/bin/giftool", + "google-oauthlib-tool": "/usr/local/bin/google-oauthlib-tool", + "gss-client": "/usr/local/bin/gss-client", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ippeveprinter": "/usr/local/bin/ippeveprinter", + "ipptool": "/usr/local/bin/ipptool", + "jar": "/usr/local/bin/jar", + "jarsigner": "/usr/local/bin/jarsigner", + "java": "/usr/local/bin/java", + "javac": "/usr/local/bin/javac", + "javadoc": "/usr/local/bin/javadoc", + "javap": "/usr/local/bin/javap", + "jcmd": "/usr/local/bin/jcmd", + "jconsole": "/usr/local/bin/jconsole", + "jdb": "/usr/local/bin/jdb", + "jdeprscan": "/usr/local/bin/jdeprscan", + "jdeps": "/usr/local/bin/jdeps", + "jfr": "/usr/local/bin/jfr", + "jhsdb": "/usr/local/bin/jhsdb", + "jimage": "/usr/local/bin/jimage", + "jinfo": "/usr/local/bin/jinfo", + "jlink": "/usr/local/bin/jlink", + "jmap": "/usr/local/bin/jmap", + "jmod": "/usr/local/bin/jmod", + "jpackage": "/usr/local/bin/jpackage", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "jps": "/usr/local/bin/jps", + "jrunscript": "/usr/local/bin/jrunscript", + "jshell": "/usr/local/bin/jshell", + "jstack": "/usr/local/bin/jstack", + "jstat": "/usr/local/bin/jstat", + "jstatd": "/usr/local/bin/jstatd", + "jwebserver": "/usr/local/bin/jwebserver", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "keytool": "/usr/local/bin/keytool", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "makeconv": "/usr/local/bin/makeconv", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "normalizer": "/usr/local/bin/normalizer", + "openssl": "/usr/local/bin/openssl", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "pyrsa-decrypt": "/usr/local/bin/pyrsa-decrypt", + "pyrsa-encrypt": "/usr/local/bin/pyrsa-encrypt", + "pyrsa-keygen": "/usr/local/bin/pyrsa-keygen", + "pyrsa-priv2pub": "/usr/local/bin/pyrsa-priv2pub", + "pyrsa-sign": "/usr/local/bin/pyrsa-sign", + "pyrsa-verify": "/usr/local/bin/pyrsa-verify", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "rmiregistry": "/usr/local/bin/rmiregistry", + "sclient": "/usr/local/bin/sclient", + "selenium-manager": "/usr/local/bin/selenium-manager", + "serialver": "/usr/local/bin/serialver", + "seshat": "/usr/local/bin/seshat", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "wsdump": "/usr/local/bin/wsdump", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xslt-config": "/usr/local/bin/xslt-config", + "xsltproc": "/usr/local/bin/xsltproc", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/smcpp:1.15.4--py39hac1eaed_0.json b/quay.io/biocontainers/s/smcpp:1.15.4--py39hac1eaed_0.json new file mode 100644 index 0000000..7423574 --- /dev/null +++ b/quay.io/biocontainers/s/smcpp:1.15.4--py39hac1eaed_0.json @@ -0,0 +1,344 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.9": "/usr/local/bin/2to3-3.9", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "annotate": "/usr/local/bin/annotate", + "aserver": "/usr/local/bin/aserver", + "assistant": "/usr/local/bin/assistant", + "attr": "/usr/local/bin/attr", + "autopoint": "/usr/local/bin/autopoint", + "balsam": "/usr/local/bin/balsam", + "bdftogd": "/usr/local/bin/bdftogd", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "cairo-trace": "/usr/local/bin/cairo-trace", + "canbusutil": "/usr/local/bin/canbusutil", + "captoinfo": "/usr/local/bin/captoinfo", + "certutil": "/usr/local/bin/certutil", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "cups-config": "/usr/local/bin/cups-config", + "curl-config": "/usr/local/bin/curl-config", + "dbus-cleanup-sockets": "/usr/local/bin/dbus-cleanup-sockets", + "dbus-daemon": "/usr/local/bin/dbus-daemon", + "dbus-launch": "/usr/local/bin/dbus-launch", + "dbus-monitor": "/usr/local/bin/dbus-monitor", + "dbus-run-session": "/usr/local/bin/dbus-run-session", + "dbus-send": "/usr/local/bin/dbus-send", + "dbus-test-tool": "/usr/local/bin/dbus-test-tool", + "dbus-update-activation-environment": "/usr/local/bin/dbus-update-activation-environment", + "dbus-uuidgen": "/usr/local/bin/dbus-uuidgen", + "derb": "/usr/local/bin/derb", + "designer": "/usr/local/bin/designer", + "djpeg": "/usr/local/bin/djpeg", + "envsubst": "/usr/local/bin/envsubst", + "f2py": "/usr/local/bin/f2py", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fc-cache": "/usr/local/bin/fc-cache", + "fc-cat": "/usr/local/bin/fc-cat", + "fc-conflist": "/usr/local/bin/fc-conflist", + "fc-list": "/usr/local/bin/fc-list", + "fc-match": "/usr/local/bin/fc-match", + "fc-pattern": "/usr/local/bin/fc-pattern", + "fc-query": "/usr/local/bin/fc-query", + "fc-scan": "/usr/local/bin/fc-scan", + "fc-validate": "/usr/local/bin/fc-validate", + "fixqt4headers.pl": "/usr/local/bin/fixqt4headers.pl", + "flac": "/usr/local/bin/flac", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "fribidi": "/usr/local/bin/fribidi", + "gapplication": "/usr/local/bin/gapplication", + "gd2copypal": "/usr/local/bin/gd2copypal", + "gd2togif": "/usr/local/bin/gd2togif", + "gd2topng": "/usr/local/bin/gd2topng", + "gdbus": "/usr/local/bin/gdbus", + "gdbus-codegen": "/usr/local/bin/gdbus-codegen", + "gdcmpgif": "/usr/local/bin/gdcmpgif", + "gdparttopng": "/usr/local/bin/gdparttopng", + "gdtopng": "/usr/local/bin/gdtopng", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "getfattr": "/usr/local/bin/getfattr", + "gettext": "/usr/local/bin/gettext", + "gettext.sh": "/usr/local/bin/gettext.sh", + "gettextize": "/usr/local/bin/gettextize", + "gi-compile-repository": "/usr/local/bin/gi-compile-repository", + "gi-decompile-typelib": "/usr/local/bin/gi-decompile-typelib", + "gi-inspect-typelib": "/usr/local/bin/gi-inspect-typelib", + "giftogd2": "/usr/local/bin/giftogd2", + "gio": "/usr/local/bin/gio", + "gio-querymodules": "/usr/local/bin/gio-querymodules", + "glib-compile-resources": "/usr/local/bin/glib-compile-resources", + "glib-compile-schemas": "/usr/local/bin/glib-compile-schemas", + "glib-genmarshal": "/usr/local/bin/glib-genmarshal", + "glib-gettextize": "/usr/local/bin/glib-gettextize", + "glib-mkenums": "/usr/local/bin/glib-mkenums", + "gnuplot": "/usr/local/bin/gnuplot", + "gobject-query": "/usr/local/bin/gobject-query", + "gpg-error": "/usr/local/bin/gpg-error", + "gpgrt-config": "/usr/local/bin/gpgrt-config", + "gresource": "/usr/local/bin/gresource", + "gsettings": "/usr/local/bin/gsettings", + "gsl-config": "/usr/local/bin/gsl-config", + "gsl-histogram": "/usr/local/bin/gsl-histogram", + "gsl-randist": "/usr/local/bin/gsl-randist", + "gss-client": "/usr/local/bin/gss-client", + "gst-device-monitor-1.0": "/usr/local/bin/gst-device-monitor-1.0", + "gst-discoverer-1.0": "/usr/local/bin/gst-discoverer-1.0", + "gst-inspect-1.0": "/usr/local/bin/gst-inspect-1.0", + "gst-launch-1.0": "/usr/local/bin/gst-launch-1.0", + "gst-play-1.0": "/usr/local/bin/gst-play-1.0", + "gst-stats-1.0": "/usr/local/bin/gst-stats-1.0", + "gst-typefind-1.0": "/usr/local/bin/gst-typefind-1.0", + "gtester": "/usr/local/bin/gtester", + "gtester-report": "/usr/local/bin/gtester-report", + "hb-info": "/usr/local/bin/hb-info", + "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure", + "hb-shape": "/usr/local/bin/hb-shape", + "hb-subset": "/usr/local/bin/hb-subset", + "hb-view": "/usr/local/bin/hb-view", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.9": "/usr/local/bin/idle3.9", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ippeveprinter": "/usr/local/bin/ippeveprinter", + "ipptool": "/usr/local/bin/ipptool", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "lame": "/usr/local/bin/lame", + "lconvert": "/usr/local/bin/lconvert", + "ldapadd": "/usr/local/bin/ldapadd", + "ldapcompare": "/usr/local/bin/ldapcompare", + "ldapdelete": "/usr/local/bin/ldapdelete", + "ldapexop": "/usr/local/bin/ldapexop", + "ldapmodify": "/usr/local/bin/ldapmodify", + "ldapmodrdn": "/usr/local/bin/ldapmodrdn", + "ldappasswd": "/usr/local/bin/ldappasswd", + "ldapsearch": "/usr/local/bin/ldapsearch", + "ldapurl": "/usr/local/bin/ldapurl", + "ldapvc": "/usr/local/bin/ldapvc", + "ldapwhoami": "/usr/local/bin/ldapwhoami", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linguist": "/usr/local/bin/linguist", + "linkicc": "/usr/local/bin/linkicc", + "lprodump": "/usr/local/bin/lprodump", + "lrelease": "/usr/local/bin/lrelease", + "lrelease-pro": "/usr/local/bin/lrelease-pro", + "lupdate": "/usr/local/bin/lupdate", + "lupdate-pro": "/usr/local/bin/lupdate-pro", + "lz4": "/usr/local/bin/lz4", + "lz4c": "/usr/local/bin/lz4c", + "lz4cat": "/usr/local/bin/lz4cat", + "makeconv": "/usr/local/bin/makeconv", + "meshdebug": "/usr/local/bin/meshdebug", + "metaflac": "/usr/local/bin/metaflac", + "moc": "/usr/local/bin/moc", + "mpg123": "/usr/local/bin/mpg123", + "mpg123-id3dump": "/usr/local/bin/mpg123-id3dump", + "mpg123-strip": "/usr/local/bin/mpg123-strip", + "msgattrib": "/usr/local/bin/msgattrib", + "msgcat": "/usr/local/bin/msgcat", + "msgcmp": "/usr/local/bin/msgcmp", + "msgcomm": "/usr/local/bin/msgcomm", + "msgconv": "/usr/local/bin/msgconv", + "msgen": "/usr/local/bin/msgen", + "msgexec": "/usr/local/bin/msgexec", + "msgfilter": "/usr/local/bin/msgfilter", + "msgfmt": "/usr/local/bin/msgfmt", + "msggrep": "/usr/local/bin/msggrep", + "msginit": "/usr/local/bin/msginit", + "msgmerge": "/usr/local/bin/msgmerge", + "msgunfmt": "/usr/local/bin/msgunfmt", + "msguniq": "/usr/local/bin/msguniq", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "ngettext": "/usr/local/bin/ngettext", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "nspr-config": "/usr/local/bin/nspr-config", + "nss-config": "/usr/local/bin/nss-config", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "out123": "/usr/local/bin/out123", + "pa-info": "/usr/local/bin/pa-info", + "pacat": "/usr/local/bin/pacat", + "pactl": "/usr/local/bin/pactl", + "padsp": "/usr/local/bin/padsp", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pamon": "/usr/local/bin/pamon", + "pango-list": "/usr/local/bin/pango-list", + "pango-segmentation": "/usr/local/bin/pango-segmentation", + "pango-view": "/usr/local/bin/pango-view", + "paplay": "/usr/local/bin/paplay", + "parec": "/usr/local/bin/parec", + "parecord": "/usr/local/bin/parecord", + "pcre2-config": "/usr/local/bin/pcre2-config", + "pcre2grep": "/usr/local/bin/pcre2grep", + "pcre2test": "/usr/local/bin/pcre2test", + "pg_config": "/usr/local/bin/pg_config", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pixeltool": "/usr/local/bin/pixeltool", + "pk12util": "/usr/local/bin/pk12util", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "pngtogd": "/usr/local/bin/pngtogd", + "pngtogd2": "/usr/local/bin/pngtogd2", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.9": "/usr/local/bin/pydoc3.9", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.9": "/usr/local/bin/python3.9", + "python3.9-config": "/usr/local/bin/python3.9-config", + "qcollectiongenerator": "/usr/local/bin/qcollectiongenerator", + "qdbus": "/usr/local/bin/qdbus", + "qdbuscpp2xml": "/usr/local/bin/qdbuscpp2xml", + "qdbusviewer": "/usr/local/bin/qdbusviewer", + "qdbusxml2cpp": "/usr/local/bin/qdbusxml2cpp", + "qdistancefieldgenerator": "/usr/local/bin/qdistancefieldgenerator", + "qdoc": "/usr/local/bin/qdoc", + "qgltf": "/usr/local/bin/qgltf", + "qhelpgenerator": "/usr/local/bin/qhelpgenerator", + "qlalr": "/usr/local/bin/qlalr", + "qmake": "/usr/local/bin/qmake", + "qml": "/usr/local/bin/qml", + "qmlcachegen": "/usr/local/bin/qmlcachegen", + "qmleasing": "/usr/local/bin/qmleasing", + "qmlformat": "/usr/local/bin/qmlformat", + "qmlimportscanner": "/usr/local/bin/qmlimportscanner", + "qmllint": "/usr/local/bin/qmllint", + "qmlmin": "/usr/local/bin/qmlmin", + "qmlplugindump": "/usr/local/bin/qmlplugindump", + "qmlpreview": "/usr/local/bin/qmlpreview", + "qmlprofiler": "/usr/local/bin/qmlprofiler", + "qmlscene": "/usr/local/bin/qmlscene", + "qmltestrunner": "/usr/local/bin/qmltestrunner", + "qmltime": "/usr/local/bin/qmltime", + "qmltyperegistrar": "/usr/local/bin/qmltyperegistrar", + "qscxmlc": "/usr/local/bin/qscxmlc", + "qt.conf": "/usr/local/bin/qt.conf", + "qtattributionsscanner": "/usr/local/bin/qtattributionsscanner", + "qtdiag": "/usr/local/bin/qtdiag", + "qtpaths": "/usr/local/bin/qtpaths", + "qtplugininfo": "/usr/local/bin/qtplugininfo", + "qvkgen": "/usr/local/bin/qvkgen", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rcc": "/usr/local/bin/rcc", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "recode-sr-latin": "/usr/local/bin/recode-sr-latin", + "repc": "/usr/local/bin/repc", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "setfattr": "/usr/local/bin/setfattr", + "sim_client": "/usr/local/bin/sim_client", + "smc++": "/usr/local/bin/smc++", + "sndfile-cmp": "/usr/local/bin/sndfile-cmp", + "sndfile-concat": "/usr/local/bin/sndfile-concat", + "sndfile-convert": "/usr/local/bin/sndfile-convert", + "sndfile-deinterleave": "/usr/local/bin/sndfile-deinterleave", + "sndfile-info": "/usr/local/bin/sndfile-info", + "sndfile-interleave": "/usr/local/bin/sndfile-interleave", + "sndfile-metadata-get": "/usr/local/bin/sndfile-metadata-get", + "sndfile-metadata-set": "/usr/local/bin/sndfile-metadata-set", + "sndfile-play": "/usr/local/bin/sndfile-play", + "sndfile-salvage": "/usr/local/bin/sndfile-salvage", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "syncqt.pl": "/usr/local/bin/syncqt.pl", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "tracegen": "/usr/local/bin/tracegen", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "uic": "/usr/local/bin/uic", + "unlz4": "/usr/local/bin/unlz4", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "webpng": "/usr/local/bin/webpng", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xgettext": "/usr/local/bin/xgettext", + "xkbcli": "/usr/local/bin/xkbcli", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xmlpatterns": "/usr/local/bin/xmlpatterns", + "xmlpatternsvalidator": "/usr/local/bin/xmlpatternsvalidator", + "xmlwf": "/usr/local/bin/xmlwf", + "yat2m": "/usr/local/bin/yat2m", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/softsv:1.4.2--hb891895_0.json b/quay.io/biocontainers/s/softsv:1.4.2--hb891895_0.json new file mode 100644 index 0000000..4e1a328 --- /dev/null +++ b/quay.io/biocontainers/s/softsv:1.4.2--hb891895_0.json @@ -0,0 +1,55 @@ +{ + "SoftSV": "/usr/local/bin/SoftSV", + "bamtools": "/usr/local/bin/bamtools", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "derb": "/usr/local/bin/derb", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "makeconv": "/usr/local/bin/makeconv", + "pkgdata": "/usr/local/bin/pkgdata", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/spclust:28.5.19--h425c490_1.json b/quay.io/biocontainers/s/spclust:28.5.19--h425c490_1.json new file mode 100644 index 0000000..630a911 --- /dev/null +++ b/quay.io/biocontainers/s/spclust:28.5.19--h425c490_1.json @@ -0,0 +1,104 @@ +{ + "aggregate_profile.pl": "/usr/local/bin/aggregate_profile.pl", + "guispclust": "/usr/local/bin/guispclust", + "mpiCC": "/usr/local/bin/mpiCC", + "mpic++": "/usr/local/bin/mpic++", + "mpicc": "/usr/local/bin/mpicc", + "mpicxx": "/usr/local/bin/mpicxx", + "mpiexec": "/usr/local/bin/mpiexec", + "mpif77": "/usr/local/bin/mpif77", + "mpif90": "/usr/local/bin/mpif90", + "mpifort": "/usr/local/bin/mpifort", + "mpirun": "/usr/local/bin/mpirun", + "mpispclust": "/usr/local/bin/mpispclust", + "muscle": "/usr/local/bin/muscle", + "ompi-clean": "/usr/local/bin/ompi-clean", + "ompi-server": "/usr/local/bin/ompi-server", + "ompi_info": "/usr/local/bin/ompi_info", + "opal_wrapper": "/usr/local/bin/opal_wrapper", + "orte-clean": "/usr/local/bin/orte-clean", + "orte-info": "/usr/local/bin/orte-info", + "orte-server": "/usr/local/bin/orte-server", + "ortecc": "/usr/local/bin/ortecc", + "orted": "/usr/local/bin/orted", + "orterun": "/usr/local/bin/orterun", + "oshCC": "/usr/local/bin/oshCC", + "oshc++": "/usr/local/bin/oshc++", + "oshcc": "/usr/local/bin/oshcc", + "oshcxx": "/usr/local/bin/oshcxx", + "oshfort": "/usr/local/bin/oshfort", + "oshmem_info": "/usr/local/bin/oshmem_info", + "oshrun": "/usr/local/bin/oshrun", + "profile2mat.pl": "/usr/local/bin/profile2mat.pl", + "shmemCC": "/usr/local/bin/shmemCC", + "shmemc++": "/usr/local/bin/shmemc++", + "shmemcc": "/usr/local/bin/shmemcc", + "shmemcxx": "/usr/local/bin/shmemcxx", + "shmemfort": "/usr/local/bin/shmemfort", + "shmemrun": "/usr/local/bin/shmemrun", + "spclust": "/usr/local/bin/spclust", + "spclustGMM": "/usr/local/bin/spclustGMM", + "x86_64-conda-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda-linux-gnu-addr2line", + "x86_64-conda-linux-gnu-ar": "/usr/local/bin/x86_64-conda-linux-gnu-ar", + "x86_64-conda-linux-gnu-as": "/usr/local/bin/x86_64-conda-linux-gnu-as", + "x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++", + "x86_64-conda-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda-linux-gnu-c++filt", + "x86_64-conda-linux-gnu-c89": "/usr/local/bin/x86_64-conda-linux-gnu-c89", + "x86_64-conda-linux-gnu-c99": "/usr/local/bin/x86_64-conda-linux-gnu-c99", + "x86_64-conda-linux-gnu-cc": "/usr/local/bin/x86_64-conda-linux-gnu-cc", + "x86_64-conda-linux-gnu-cpp": "/usr/local/bin/x86_64-conda-linux-gnu-cpp", + "x86_64-conda-linux-gnu-dwp": "/usr/local/bin/x86_64-conda-linux-gnu-dwp", + "x86_64-conda-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda-linux-gnu-elfedit", + "x86_64-conda-linux-gnu-g++": "/usr/local/bin/x86_64-conda-linux-gnu-g++", + "x86_64-conda-linux-gnu-gcc": "/usr/local/bin/x86_64-conda-linux-gnu-gcc", + "x86_64-conda-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ar", + "x86_64-conda-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-nm", + "x86_64-conda-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-gcc-ranlib", + "x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov", + "x86_64-conda-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-dump", + "x86_64-conda-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda-linux-gnu-gcov-tool", + "x86_64-conda-linux-gnu-gprof": "/usr/local/bin/x86_64-conda-linux-gnu-gprof", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda-linux-gnu-ld.bfd", + "x86_64-conda-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda-linux-gnu-ld.gold", + "x86_64-conda-linux-gnu-nm": "/usr/local/bin/x86_64-conda-linux-gnu-nm", + "x86_64-conda-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda-linux-gnu-objcopy", + "x86_64-conda-linux-gnu-objdump": "/usr/local/bin/x86_64-conda-linux-gnu-objdump", + "x86_64-conda-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda-linux-gnu-ranlib", + "x86_64-conda-linux-gnu-readelf": "/usr/local/bin/x86_64-conda-linux-gnu-readelf", + "x86_64-conda-linux-gnu-size": "/usr/local/bin/x86_64-conda-linux-gnu-size", + "x86_64-conda-linux-gnu-strings": "/usr/local/bin/x86_64-conda-linux-gnu-strings", + "x86_64-conda-linux-gnu-strip": "/usr/local/bin/x86_64-conda-linux-gnu-strip", + "x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg", + "x86_64-conda_cos6-linux-gnu-addr2line": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-addr2line", + "x86_64-conda_cos6-linux-gnu-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ar", + "x86_64-conda_cos6-linux-gnu-as": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-as", + "x86_64-conda_cos6-linux-gnu-c++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++", + "x86_64-conda_cos6-linux-gnu-c++filt": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c++filt", + "x86_64-conda_cos6-linux-gnu-c89": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c89", + "x86_64-conda_cos6-linux-gnu-c99": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-c99", + "x86_64-conda_cos6-linux-gnu-cc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cc", + "x86_64-conda_cos6-linux-gnu-cpp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-cpp", + "x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp", + "x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit", + "x86_64-conda_cos6-linux-gnu-g++": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-g++", + "x86_64-conda_cos6-linux-gnu-gcc": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc", + "x86_64-conda_cos6-linux-gnu-gcc-ar": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ar", + "x86_64-conda_cos6-linux-gnu-gcc-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-nm", + "x86_64-conda_cos6-linux-gnu-gcc-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcc-ranlib", + "x86_64-conda_cos6-linux-gnu-gcov": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov", + "x86_64-conda_cos6-linux-gnu-gcov-dump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-dump", + "x86_64-conda_cos6-linux-gnu-gcov-tool": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gcov-tool", + "x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd", + "x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold", + "x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm", + "x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy", + "x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump", + "x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib", + "x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf", + "x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size", + "x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings", + "x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip" +} \ No newline at end of file diff --git a/quay.io/biocontainers/s/superintervals:0.2.5--py310h8ea774a_0.json b/quay.io/biocontainers/s/superintervals:0.2.5--py310h8ea774a_0.json new file mode 100644 index 0000000..effa189 --- /dev/null +++ b/quay.io/biocontainers/s/superintervals:0.2.5--py310h8ea774a_0.json @@ -0,0 +1,53 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.10": "/usr/local/bin/2to3-3.10", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "cygdb": "/usr/local/bin/cygdb", + "cython": "/usr/local/bin/cython", + "cythonize": "/usr/local/bin/cythonize", + "idle3": "/usr/local/bin/idle3", + "idle3.10": "/usr/local/bin/idle3.10", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.10": "/usr/local/bin/pydoc3.10", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.10": "/usr/local/bin/python3.10", + "python3.10-config": "/usr/local/bin/python3.10-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld" +} \ No newline at end of file diff --git a/quay.io/biocontainers/v/virdig:1.0.0--h5ca1c30_0.json b/quay.io/biocontainers/v/virdig:1.0.0--h5ca1c30_0.json new file mode 100644 index 0000000..7d4b1bc --- /dev/null +++ b/quay.io/biocontainers/v/virdig:1.0.0--h5ca1c30_0.json @@ -0,0 +1,54 @@ +{ + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "derb": "/usr/local/bin/derb", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "makeconv": "/usr/local/bin/makeconv", + "pkgdata": "/usr/local/bin/pkgdata", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "virdig": "/usr/local/bin/virdig", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file