diff --git a/counts.json b/counts.json index e609d4b..3ef9840 100644 --- a/counts.json +++ b/counts.json @@ -2326,9 +2326,9 @@ "2csfastq_1csfastq": 1, "2ft": 2, "2ndscore": 1, - "2to3": 3790, - "2to3-3.10": 828, - "2to3-3.11": 279, + "2to3": 3792, + "2to3-3.10": 829, + "2to3-3.11": 280, "2to3-3.12": 279, "2to3-3.4": 6, "2to3-3.5": 103, @@ -5206,7 +5206,7 @@ "addtit.pl": 2, "adf_checker.pl": 1, "adhocfilelist": 1, - "adig": 4605, + "adig": 4607, "adjustPeakFile.pl": 5, "adjustRedunGroupFile.pl": 5, "adjustScanRankerScoreByGroup": 2, @@ -5323,7 +5323,7 @@ "agrvate": 1, "agtsampleinforw.dll": 2, "ahmm-s": 1, - "ahost": 4605, + "ahost": 4607, "airr-tools": 5, "akita_data.py": 1, "akita_data_read.py": 1, @@ -7234,7 +7234,7 @@ "broad_utils.py": 1, "brockman_pipeline": 1, "brooklyn_plot": 1, - "brotli": 458, + "brotli": 460, "browse": 18, "bs_call": 2, "bs_seeker2-align.py": 1, @@ -7338,7 +7338,7 @@ "bundlelinks": 2, "bundler": 19, "bunwarpj": 4, - "bunzip2": 6778, + "bunzip2": 6782, "burden_test_vase": 1, "burst_linux_DB12": 1, "burst_linux_DB15": 1, @@ -7392,16 +7392,16 @@ "bxStats.py": 1, "bxcl_seqqc": 1, "bxtools": 1, - "bzcat": 6778, - "bzcmp": 6778, - "bzdiff": 6778, - "bzegrep": 6778, - "bzfgrep": 6778, - "bzgrep": 6778, - "bzip2": 6778, - "bzip2recover": 6778, - "bzless": 6778, - "bzmore": 6778, + "bzcat": 6782, + "bzcmp": 6782, + "bzdiff": 6782, + "bzegrep": 6782, + "bzfgrep": 6782, + "bzgrep": 6782, + "bzip2": 6782, + "bzip2recover": 6782, + "bzless": 6782, + "bzmore": 6782, "c++": 5, "c++filt": 8, "c-index-test": 8, @@ -7418,7 +7418,7 @@ "cPecanLibTests": 1, "cPecanModifyHmm": 1, "cPecanRealign": 1, - "c_rehash": 7923, + "c_rehash": 7927, "ca2ace.pl": 3, "ca2ctg": 2, "ca2mates": 2, @@ -7598,7 +7598,7 @@ "capnpc-capnp": 58, "capnpc-cython": 1, "capri_eval": 1, - "captoinfo": 7855, + "captoinfo": 7859, "captus_assembly": 1, "caqc.pl": 3, "caqc_help.ini": 3, @@ -8046,7 +8046,7 @@ "cit2pmid": 38, "civicpy": 1, "cjk-gs-integrate": 1, - "cjpeg": 5836, + "cjpeg": 5838, "ckeygen": 1, "cksum": 85, "claMLST": 1, @@ -8157,7 +8157,7 @@ "cleanup-coverage.py": 2, "cleanup-stale-gcp-resources.py": 1, "cleanup.py": 1, - "clear": 7855, + "clear": 7859, "clearCNV": 1, "clearcut": 1, "cleric": 1, @@ -8533,7 +8533,7 @@ "compileSpliceCands": 13, "compile_STARE_Linux.sh": 1, "compile_STARE_macOS.sh": 1, - "compile_et": 5896, + "compile_et": 5898, "compiled_table.py": 1, "compleasm": 1, "complementBed": 280, @@ -8849,7 +8849,7 @@ "coresnpfilter": 1, "corgi": 1, "corgi-train": 1, - "coronaspades.py": 11, + "coronaspades.py": 12, "correct": 2, "correct-cnv": 1, "correct-frags": 3, @@ -9199,7 +9199,7 @@ "curate_universe": 1, "curesim": 2, "curl": 5148, - "curl-config": 6000, + "curl-config": 6002, "curlywhirly": 1, "curve_keygen": 72, "cusp": 27, @@ -9650,7 +9650,7 @@ "depth_calc.py": 1, "depth_estim_from_vcf.sh": 1, "depythontex": 1, - "derb": 5913, + "derb": 5914, "derep_stuff.py": 2, "deripcal": 1, "derna": 1, @@ -9820,7 +9820,7 @@ "django-admin": 4, "django-admin.py": 3, "django-admin.pyc": 1, - "djpeg": 5836, + "djpeg": 5838, "dkfzbiasfilter.py": 1, "dkfzbiasfilter_summarize.py": 1, "dlcoal_to_dlcpar": 1, @@ -10829,7 +10829,7 @@ "ezez4makefile_v4.pl": 1, "ezez4qsub_vx1.pl": 1, "ezez_vx1.pl": 1, - "f2py": 2145, + "f2py": 2147, "f2py2": 136, "f2py2.7": 136, "f2py3": 1597, @@ -11292,8 +11292,8 @@ "fasxl": 2, "fathom": 2, "favites_lite.py": 1, - "fax2ps": 5309, - "fax2tiff": 5309, + "fax2ps": 5311, + "fax2tiff": 5311, "fba": 1, "fc": 1, "fc-cache": 5376, @@ -11865,6 +11865,7 @@ "fmlrc2-convert": 1, "fmove": 2, "fmplot.py": 3, + "fmsi": 1, "fmt": 85, "fmtutil": 1, "fmtutil-sys": 1, @@ -11882,7 +11883,7 @@ "font-awesome-to-png": 2, "font2c": 3, "fontinst": 1, - "fonttools": 432, + "fonttools": 434, "fop": 1, "forceOneClusterPerPairMem.py": 1, "forest.py": 1, @@ -11974,7 +11975,7 @@ "freec": 1, "freec2bed.pl": 1, "freec2circos.pl": 1, - "freetype-config": 5900, + "freetype-config": 5902, "freeze_graph": 25, "freq2group.pl": 5, "frequency.py": 1, @@ -12587,17 +12588,17 @@ "genbank_to": 1, "genblastG": 1, "genbox": 1, - "genbrk": 5913, - "gencfu": 5913, + "genbrk": 5914, + "gencfu": 5914, "genclust": 1, - "gencnval": 5913, + "gencnval": 5914, "gencode_extract_relevant_gtf_exons.pl": 1, "gencode_singleton_unit_test": 5, "genconf": 1, "gencore": 1, "gencove": 1, "gendb": 13, - "gendict": 5913, + "gendict": 5914, "gendist": 10, "gene2protein.db3": 2, "gene2range": 215, @@ -12764,7 +12765,7 @@ "genotyphi.py": 1, "genpcz": 2, "genpept2gsi.pl": 2, - "genrb": 5913, + "genrb": 5914, "genreflex": 3, "genremdinputs.py": 6, "genrestr": 4, @@ -13158,7 +13159,7 @@ "gi2taxid.sh": 31, "gid-taxid": 1, "gie": 42, - "gif2h5": 562, + "gif2h5": 564, "gif2hdf": 126, "gif2rgb": 774, "gif2tiff": 189, @@ -13232,7 +13233,7 @@ "glnexus_cli": 1, "glob_res.pl": 1, "global.json": 1, - "glpsol": 249, + "glpsol": 250, "glsearch36": 7, "gm": 2, "gm2ranges": 38, @@ -13570,7 +13571,7 @@ "gsnapl.sse42": 12, "gsnd": 106, "gsort": 5, - "gss-client": 5896, + "gss-client": 5898, "gss-server": 2, "gst-completion-helper": 1, "gst-device-monitor-1.0": 240, @@ -13800,33 +13801,33 @@ "h4_ncgen": 126, "h4cc": 126, "h4redeploy": 126, - "h52gif": 562, - "h5c++": 562, - "h5cc": 567, - "h5clear": 546, - "h5copy": 562, - "h5debug": 562, - "h5delete": 103, - "h5diff": 562, - "h5dump": 564, - "h5fc": 549, - "h5format_convert": 546, - "h5fuse.sh": 71, - "h5import": 562, - "h5jam": 562, - "h5ls": 562, - "h5mkgrp": 562, + "h52gif": 564, + "h5c++": 564, + "h5cc": 569, + "h5clear": 548, + "h5copy": 564, + "h5debug": 564, + "h5delete": 105, + "h5diff": 564, + "h5dump": 566, + "h5fc": 551, + "h5format_convert": 548, + "h5fuse.sh": 73, + "h5import": 564, + "h5jam": 564, + "h5ls": 564, + "h5mkgrp": 564, "h5pcc": 3, "h5perf": 3, - "h5perf_serial": 562, + "h5perf_serial": 564, "h5pfc": 3, - "h5redeploy": 562, - "h5repack": 562, - "h5repart": 562, - "h5stat": 562, - "h5tools_test_utils": 51, - "h5unjam": 562, - "h5watch": 546, + "h5redeploy": 564, + "h5repack": 564, + "h5repart": 564, + "h5stat": 564, + "h5tools_test_utils": 53, + "h5unjam": 564, + "h5watch": 548, "hAMRoaster": 1, "h_num": 1, "haarz.x": 1, @@ -14353,21 +14354,21 @@ "humann_unpack_pathways": 1, "humid": 1, "hv-pipeline.py": 1, - "hwloc-annotate": 85, + "hwloc-annotate": 86, "hwloc-assembler": 2, "hwloc-assembler-remote": 2, - "hwloc-bind": 85, - "hwloc-calc": 85, - "hwloc-compress-dir": 85, - "hwloc-diff": 85, + "hwloc-bind": 86, + "hwloc-calc": 86, + "hwloc-compress-dir": 86, + "hwloc-diff": 86, "hwloc-distances": 2, - "hwloc-distrib": 85, - "hwloc-gather-cpuid": 83, - "hwloc-gather-topology": 85, - "hwloc-info": 85, - "hwloc-ls": 85, - "hwloc-patch": 85, - "hwloc-ps": 85, + "hwloc-distrib": 86, + "hwloc-gather-cpuid": 84, + "hwloc-gather-topology": 86, + "hwloc-info": 86, + "hwloc-ls": 86, + "hwloc-patch": 86, + "hwloc-ps": 86, "hyb_analyze": 1, "hyb_check": 1, "hyb_eval": 1, @@ -14435,9 +14436,9 @@ "ichar": 1, "icon-font-to-png": 2, "iconv": 5462, - "icu-config": 5913, - "icuexportdata": 2126, - "icuinfo": 5913, + "icu-config": 5914, + "icuexportdata": 2127, + "icuinfo": 5914, "id": 85, "id_conserved_regions.pl": 1, "idba": 10, @@ -14470,11 +14471,11 @@ "idfetch": 1, "idiag-socket-details": 14, "idle": 334, - "idle3": 3459, - "idle3.10": 828, - "idle3.11": 279, + "idle3": 3463, + "idle3.10": 829, + "idle3.11": 280, "idle3.12": 279, - "idle3.13": 2, + "idle3.13": 4, "idle3.4": 6, "idle3.5": 103, "idle3.6": 343, @@ -14551,7 +14552,7 @@ "igor": 1, "igor-compute_pgen": 1, "igphyml": 1, - "igraph": 51, + "igraph": 52, "igraph_extract_clusters.R": 1, "igv": 1, "igv_hidpi": 1, @@ -14694,11 +14695,11 @@ "infoalign": 27, "infoassembly": 27, "infobase": 27, - "infocmp": 7855, + "infocmp": 7859, "inforesidue": 27, "informant.py": 1, "infoseq": 27, - "infotocap": 7855, + "infotocap": 7859, "ini2xml": 38, "init_Trinotate_sqlite_db.pl": 1, "init_db.sh": 1, @@ -15115,8 +15116,8 @@ "jp.py": 104, "jpackage": 134, "jpeg2hdf": 126, - "jpegtran": 5836, - "jpgicc": 1042, + "jpegtran": 5838, + "jpgicc": 1044, "jpredapi": 1, "jps": 554, "jq": 309, @@ -15192,14 +15193,14 @@ "just-top-hits": 18, "just_blast_test.pl": 1, "jwebserver": 50, - "k5srvutil": 5896, + "k5srvutil": 5898, "k8": 170, "k8-Linux": 1, "k_means": 1, "k_means_coefficient": 1, "k_neighbors": 1, "k_neighbors_coefficient": 1, - "kadmin": 5896, + "kadmin": 5898, "kadmin.local": 2, "kadmind": 2, "kaiju": 4, @@ -15294,7 +15295,7 @@ "kdbmeta.3.0.3": 1, "kdbmeta.3.1.0": 1, "kdbmeta.3.1.1": 1, - "kdestroy": 5896, + "kdestroy": 5898, "kea-config": 38, "keep-header": 1, "keep-ribo-periodic": 1, @@ -15305,7 +15306,7 @@ "keggcharter.py": 1, "keggpathway_map.py": 1, "keyFreq": 1, - "keyctl": 2525, + "keyctl": 2527, "keygen": 1, "keyring": 10, "keytool": 554, @@ -15336,7 +15337,7 @@ "kinSimRiboswitch": 1, "king": 1, "kingfisher": 1, - "kinit": 5896, + "kinit": 5898, "kinship-read": 1, "kinshipDecompose": 1, "kinwalker": 56, @@ -15349,7 +15350,7 @@ "kitsch": 10, "kitsune": 1, "kleborate": 1, - "klist": 5896, + "klist": 5898, "kma": 19, "kma_index": 19, "kma_shm": 19, @@ -15439,7 +15440,7 @@ "kp1mer_to_kmer.py": 1, "kp2np.py": 1, "kpal": 2, - "kpasswd": 5896, + "kpasswd": 5898, "kpileup.py": 1, "kprop": 2, "kpropd": 2, @@ -15486,7 +15487,7 @@ "krakenuniq-report": 1, "krakenuniq-translate": 1, "krakmeopen": 1, - "krb5-config": 5896, + "krb5-config": 5898, "krb5-send-pr": 2, "krb5kdc": 2, "kreport2krona.py": 3, @@ -15502,9 +15503,9 @@ "kseq_split": 1, "ksnp": 1, "kssd": 1, - "ksu": 5896, + "ksu": 5898, "ksw": 1, - "kswitch": 5896, + "kswitch": 5898, "ktClassifyBLAST": 17, "ktClassifyHits": 13, "ktGetContigMagnitudes": 17, @@ -15535,12 +15536,12 @@ "ktserver": 2, "kttimedmgr": 2, "kttimedtest": 2, - "ktutil": 5896, + "ktutil": 5898, "ktutilmgr": 2, "ktutilserv": 2, "ktutiltest": 2, "kubectl": 1, - "kvno": 5896, + "kvno": 5898, "kwip": 2, "kwip-stats": 2, "l4p-tmpl": 32, @@ -15698,8 +15699,8 @@ "libclair3.cpython-36m-x86_64-linux-gnu.so": 1, "libclair3.o": 1, "libclair3.so": 1, - "libdeflate-gunzip": 4209, - "libdeflate-gzip": 4209, + "libdeflate-gunzip": 4211, + "libdeflate-gzip": 4211, "libdrawgram.so": 5, "libdrawtree.so": 5, "libfile.pl": 1, @@ -15709,8 +15710,8 @@ "liblist.pl": 1, "liblist.pl.bak": 1, "libnetcfg": 1740, - "libpng-config": 5956, - "libpng16-config": 5956, + "libpng-config": 5958, + "libpng16-config": 5958, "libpypy-c.so": 1, "libpypy-c.so.debug": 1, "libpypy3-c.so.debug": 3, @@ -15770,7 +15771,7 @@ "link_ssv.py": 1, "linkage2allegro": 1, "linkhsp_unit_test": 5, - "linkicc": 1042, + "linkicc": 1044, "linknets": 2, "links2sql.pl": 7, "linksBed": 280, @@ -16047,8 +16048,8 @@ "lsmem": 13, "lsns": 13, "lss3": 29, - "lstopo": 85, - "lstopo-no-graphics": 85, + "lstopo": 86, + "lstopo-no-graphics": 86, "ltqnorm.pl": 1, "ltqnorm.pl.bak": 1, "ltr_finder": 3, @@ -16090,17 +16091,17 @@ "lz4_decompress": 2, "lz4c": 3539, "lz4cat": 3539, - "lzcat": 7680, - "lzcmp": 7680, - "lzdiff": 7680, - "lzegrep": 7680, - "lzfgrep": 7680, - "lzgrep": 7680, - "lzless": 7680, - "lzma": 7680, - "lzmadec": 7680, - "lzmainfo": 7680, - "lzmore": 7680, + "lzcat": 7684, + "lzcmp": 7684, + "lzdiff": 7684, + "lzegrep": 7684, + "lzfgrep": 7684, + "lzgrep": 7684, + "lzless": 7684, + "lzma": 7684, + "lzmadec": 7684, + "lzmainfo": 7684, + "lzmore": 7684, "lzop_build_offset_table.py": 60, "m-party": 1, "m-tx": 1, @@ -16416,7 +16417,7 @@ "makechimeras.sh": 31, "makeclusterdb": 5, "makecontaminatedgenomes.sh": 31, - "makeconv": 5913, + "makeconv": 5914, "makedtx": 1, "makefasta.awk": 1, "makegeo": 38, @@ -17132,7 +17133,7 @@ "metaphylerClassify": 1, "metaphylerTrain": 1, "metapi": 2, - "metaplasmidspades.py": 11, + "metaplasmidspades.py": 12, "metaplatanus": 1, "metaplots": 2, "metaprokka": 1, @@ -17147,10 +17148,10 @@ "metar_get": 1, "metar_ls": 1, "metaseq-cli": 1, - "metaspades.py": 48, + "metaspades.py": 49, "metatree": 1, "metatwist": 6, - "metaviralspades.py": 11, + "metaviralspades.py": 12, "metawatt": 1, "metawrap": 1, "metaxa2": 1, @@ -17936,7 +17937,7 @@ "nasm": 1, "nasp": 1, "native2ascii": 112, - "natsort": 164, + "natsort": 166, "nb-classify": 1, "nb-train": 1, "nbmodel_stan2.py": 1, @@ -17978,9 +17979,9 @@ "ncrf_to_bed": 2, "ncrf_to_bed.py": 2, "ncurses5-config": 565, - "ncurses6-config": 7148, + "ncurses6-config": 7152, "ncursesw5-config": 703, - "ncursesw6-config": 7149, + "ncursesw6-config": 7153, "ndg_httpclient": 2, "ndisasm": 1, "ndmetis": 60, @@ -18085,9 +18086,9 @@ "ngg_newman_watts_strogatz": 2, "ngg_path": 2, "ngg_ring_lattice": 2, - "nghttp": 4552, - "nghttpd": 4552, - "nghttpx": 4552, + "nghttp": 4554, + "nghttpd": 4554, + "nghttpx": 4554, "ngless": 2, "ngless-wrapped": 1, "nglview": 2, @@ -18334,7 +18335,7 @@ "nullarbor.pl": 1, "nulltype_module.py": 1, "numCI": 4, - "numba": 159, + "numba": 160, "number-lines": 1, "numfmt": 85, "numlines": 1, @@ -18623,12 +18624,12 @@ "openslide-quickhash1sum": 2, "openslide-show-properties": 2, "openslide-write-png": 2, - "openssl": 7923, + "openssl": 7927, "opentargets_validator": 1, "operation.py": 1, - "opj_compress": 683, - "opj_decompress": 683, - "opj_dump": 683, + "opj_compress": 685, + "opj_decompress": 685, + "opj_dump": 685, "opl2ofm": 1, "opsin": 1, "opt": 6, @@ -18868,7 +18869,7 @@ "pairtools": 3, "pairwise_comparison": 1, "pal2nal.pl": 9, - "pal2rgb": 5309, + "pal2rgb": 5311, "pal_finder": 1, "paladin": 2, "palindrome": 27, @@ -19793,10 +19794,10 @@ "pints_caller": 1, "pints_normalizer": 1, "pints_visualizer": 1, - "pip": 3793, + "pip": 3797, "pip2": 1, "pip2.7": 1, - "pip3": 2716, + "pip3": 2720, "pipdeptree": 1, "pipelign": 1, "pipeline.py": 3, @@ -19949,7 +19950,7 @@ "pkfix-helper": 1, "pkg-config": 78, "pkg-config.bin": 78, - "pkgdata": 5913, + "pkgdata": 5914, "pkginfo": 10, "pkill": 1, "pktogf": 1, @@ -19972,7 +19973,7 @@ "plasmidID": 1, "plasmidfinder.py": 1, "plasmidhawk": 1, - "plasmidspades.py": 48, + "plasmidspades.py": 49, "plasmidtron": 1, "plasnet": 2, "plass": 1, @@ -20156,9 +20157,9 @@ "pmxmutate": 1, "pn2pdf": 1, "pneumo-typer": 1, - "png-fix-itxt": 5956, + "png-fix-itxt": 5958, "pngcp": 89, - "pngfix": 5956, + "pngfix": 5958, "pngtogd": 243, "pngtogd2": 243, "pnps-gen": 1, @@ -20279,7 +20280,7 @@ "ppi2html": 2, "pplacer": 22, "ppltotf": 1, - "ppm2tiff": 5309, + "ppm2tiff": 5311, "pprodigal": 2, "pprof": 2, "pprof-symbolize": 1, @@ -20708,7 +20709,7 @@ "psiblast": 349, "psiblast_iteration_unit_test": 5, "psiblast_unit_test": 5, - "psicc": 1042, + "psicc": 1044, "psiclass": 1, "psiphi": 27, "psirc": 1, @@ -20948,12 +20949,12 @@ "pydemult": 1, "pydicom": 1, "pydna_repeatfinder": 1, - "pydoc": 3792, - "pydoc3": 3459, - "pydoc3.10": 828, - "pydoc3.11": 279, + "pydoc": 3796, + "pydoc3": 3463, + "pydoc3.10": 829, + "pydoc3.11": 280, "pydoc3.12": 279, - "pydoc3.13": 2, + "pydoc3.13": 4, "pydoc3.4": 6, "pydoc3.5": 103, "pydoc3.6": 343, @@ -20974,8 +20975,8 @@ "pyflyte-execute": 1, "pyflyte-fast-execute": 1, "pyflyte-map-execute": 1, - "pyftmerge": 432, - "pyftsubset": 432, + "pyftmerge": 434, + "pyftsubset": 434, "pygal_gen.py": 2, "pygcap": 1, "pygenetic_code": 1, @@ -21080,7 +21081,7 @@ "pytest": 151, "pytest-benchmark": 1, "pythia8-config": 1, - "python": 3793, + "python": 3797, "python-argcomplete-check-easy-install-script": 347, "python-argcomplete-tcsh": 191, "python-build": 2, @@ -21091,17 +21092,17 @@ "python2.5-config": 1, "python2.7": 333, "python2.7-config": 316, - "python3": 3460, - "python3-config": 3459, - "python3.1": 1388, - "python3.10": 828, - "python3.10-config": 828, - "python3.11": 279, - "python3.11-config": 279, + "python3": 3464, + "python3-config": 3463, + "python3.1": 1392, + "python3.10": 829, + "python3.10-config": 829, + "python3.11": 280, + "python3.11-config": 280, "python3.12": 279, "python3.12-config": 279, - "python3.13": 2, - "python3.13-config": 2, + "python3.13": 4, + "python3.13-config": 4, "python3.4": 6, "python3.4-config": 6, "python3.4m": 6, @@ -21158,7 +21159,7 @@ "qcli_make_script": 3, "qcollectiongenerator": 256, "qcollectiongenerator-qt4": 3, - "qconvex": 38, + "qconvex": 40, "qcp": 2, "qcreporter.py": 1, "qcs": 2, @@ -21173,7 +21174,7 @@ "qdbusviewer6": 1, "qdbusxml2cpp": 254, "qdbusxml2cpp-qt4": 3, - "qdelaunay": 38, + "qdelaunay": 40, "qdistancefieldgenerator": 140, "qdistancefieldgenerator6": 1, "qdoc": 229, @@ -21184,13 +21185,13 @@ "qfy.py": 1, "qgltf": 188, "qgrs": 1, - "qhalf": 38, + "qhalf": 40, "qhelpconverter": 116, "qhelpconverter-qt4": 3, "qhelpgenerator": 256, "qhelpgenerator-qt4": 3, "qhery": 1, - "qhull": 38, + "qhull": 40, "qiime2lefse.py": 1, "qiimeToMaaslin.py": 1, "qiskit-xyz2pdb": 1, @@ -21332,7 +21333,7 @@ "qvinaw": 1, "qvinaw_split": 1, "qvkgen": 140, - "qvoronoi": 38, + "qvoronoi": 40, "qwebengine_convert_dict": 140, "r-seurat-scripts-post-install-tests.bats": 2, "r-seurat-scripts-post-install-tests.sh": 2, @@ -21444,7 +21445,7 @@ "ratt": 2, "rav1e": 10, "raven": 4, - "raw2tiff": 5309, + "raw2tiff": 5311, "raw_n50": 10, "raw_n50.o": 10, "raw_vcf_parse.py": 1, @@ -21472,7 +21473,7 @@ "rbhtfinder": 1, "rblist": 2, "rbmoegrid": 2, - "rbox": 38, + "rbox": 40, "rbpbench": 1, "rbrms": 1, "rbs": 9, @@ -21512,7 +21513,7 @@ "rdfgraphisomorphism": 34, "rdfpipe": 34, "rdfs2dot": 34, - "rdjpgcom": 5836, + "rdjpgcom": 5838, "rdkit2fps": 1, "rdma_client": 25, "rdma_server": 25, @@ -21977,7 +21978,7 @@ "rescue_fusion.py": 1, "reseq": 1, "reseq-prepare-names.py": 1, - "reset": 7855, + "reset": 7859, "resetFragLibrary": 2, "reset_array.pl": 1, "reset_experiment.pl": 1, @@ -22159,8 +22160,8 @@ "rnaseq_peakfinder.pl": 1, "rnaseqc": 1, "rnasoup_consMFE.pl": 1, - "rnaspades.py": 48, - "rnaviralspades.py": 11, + "rnaspades.py": 49, + "rnaviralspades.py": 12, "rnavirhost": 1, "rnazAnnotate.pl": 3, "rnazBEDsort.pl": 3, @@ -22889,7 +22890,7 @@ "scancel-range": 1, "scancel_range.py": 1, "scandeps.pl": 2, - "scanpy": 53, + "scanpy": 54, "scanpy-cli": 1, "scanpy-filter-cells": 1, "scanpy-filter-genes": 1, @@ -22962,7 +22963,7 @@ "scitokens-test-access": 1, "scitokens-verify": 1, "sclass.X86_64.LINUX": 1, - "sclient": 5896, + "sclient": 5898, "sclust_summary.sh": 1, "scluster": 3, "scmap-cli-post-install-tests.bats": 1, @@ -23493,7 +23494,7 @@ "sim-cover2": 2, "sim-shotgun": 2, "sim4db": 3, - "sim_client": 5896, + "sim_client": 5898, "sim_reads": 10, "sim_reads.o": 10, "sim_reads_tran": 10, @@ -23876,23 +23877,23 @@ "spacepharer": 1, "spacy": 1, "spades": 3, - "spades-bwa": 45, - "spades-convert-bin-to-fasta": 37, - "spades-core": 45, - "spades-corrector-core": 45, + "spades-bwa": 46, + "spades-convert-bin-to-fasta": 38, + "spades-core": 46, + "spades-corrector-core": 46, "spades-dipspades-core": 2, - "spades-gbuilder": 45, - "spades-gmapper": 45, - "spades-gsimplifier": 37, - "spades-hammer": 45, - "spades-ionhammer": 45, - "spades-kmer-estimating": 37, - "spades-kmercount": 45, - "spades-read-filter": 37, + "spades-gbuilder": 46, + "spades-gmapper": 46, + "spades-gsimplifier": 38, + "spades-hammer": 46, + "spades-ionhammer": 46, + "spades-kmer-estimating": 38, + "spades-kmercount": 46, + "spades-read-filter": 38, "spades-truseq-scfcorrection": 45, - "spades.py": 48, + "spades.py": 49, "spades_assembly.sh": 1, - "spades_init.py": 48, + "spades_init.py": 49, "spaligner": 37, "spaln": 4, "spamo": 13, @@ -24082,7 +24083,7 @@ "sqlformat": 9, "sqlite.pl": 1, "sqlite3": 2723, - "sqlite3_analyzer": 7245, + "sqlite3_analyzer": 7249, "sqlitebrowser": 1, "sqlmetal": 16, "sqlsharp": 16, @@ -24717,7 +24718,7 @@ "tableschema": 1, "tablet": 1, "tabnum2id": 1, - "tabs": 7855, + "tabs": 7859, "tabulate": 142, "tabulate.py": 1, "tabulator": 1, @@ -24891,9 +24892,9 @@ "tbvcfreport": 1, "tcdemux": 1, "tcfinder": 1, - "tclsh": 7482, + "tclsh": 7486, "tclsh8.5": 473, - "tclsh8.6": 7245, + "tclsh8.6": 7249, "tcode": 27, "tcsh": 3, "td_bignet": 2, @@ -25096,7 +25097,7 @@ "tiara-test": 2, "tiberius": 1, "tiberius.py": 1, - "tic": 7855, + "tic": 7859, "tiddit": 1, "tides": 1, "tidk": 1, @@ -25104,23 +25105,23 @@ "tidygff3": 1, "tidyp": 66, "tie": 1, - "tiff2bw": 5309, + "tiff2bw": 5311, "tiff2fsspec": 21, - "tiff2pdf": 5309, - "tiff2ps": 5309, - "tiff2rgba": 5309, - "tiffcmp": 5309, + "tiff2pdf": 5311, + "tiff2ps": 5311, + "tiff2rgba": 5311, + "tiffcmp": 5311, "tiffcomment": 23, - "tiffcp": 5583, - "tiffcrop": 5309, - "tiffdither": 5309, - "tiffdump": 5583, + "tiffcp": 5585, + "tiffcrop": 5311, + "tiffdither": 5311, + "tiffdump": 5585, "tifffile": 26, - "tiffinfo": 5583, - "tiffmedian": 5309, - "tiffset": 5583, - "tiffsplit": 5583, - "tificc": 1042, + "tiffinfo": 5585, + "tiffmedian": 5311, + "tiffset": 5585, + "tiffsplit": 5585, + "tificc": 1044, "tigStore": 3, "tiger-hash": 11, "tigge_check": 1, @@ -25174,7 +25175,7 @@ "titan-gc-prepare.py": 1, "titan.py": 1, "titration": 2, - "tjbench": 456, + "tjbench": 458, "tkconch": 1, "tkpp": 1, "tksm": 1, @@ -25205,7 +25206,7 @@ "to_upper_case.pl.bak": 1, "toco": 80, "toco_from_protos": 80, - "toe": 7855, + "toe": 7859, "tohnsw": 1, "toil": 3, "toil-cwl-runner": 3, @@ -25258,8 +25259,8 @@ "tpp_hostname": 2, "tpp_models.pl": 2, "tpptray.bat": 2, - "tput": 7855, - "tqdm": 384, + "tput": 7859, + "tqdm": 385, "tr": 85, "tr-trimmer": 1, "trace_comment": 2, @@ -25333,7 +25334,7 @@ "transform_gfa.py": 1, "transformers-cli": 4, "transformseq": 13, - "transicc": 1042, + "transicc": 1044, "transit": 1, "transition_counter": 1, "transl": 1, @@ -25489,7 +25490,7 @@ "tryptic.py": 1, "ts": 3, "tsebra.py": 3, - "tset": 7855, + "tset": 7859, "tskit": 7, "tsort": 85, "tsp": 2, @@ -25524,7 +25525,7 @@ "tth-hash": 11, "ttree": 66, "tts": 5, - "ttx": 432, + "ttx": 434, "tty": 85, "tune": 1, "turbocor": 1, @@ -25669,7 +25670,7 @@ "unix2mac": 2, "unlink": 85, "unlz4": 3539, - "unlzma": 7680, + "unlzma": 7684, "unmapped2anchors.py": 1, "unmerge": 1, "unmerge-paired-reads.sh": 2, @@ -25687,7 +25688,7 @@ "unstarch-typical": 15, "untangle": 2, "unweight_fasta.py": 1, - "unxz": 7905, + "unxz": 7909, "unzip": 32, "unzip.sh": 30, "unziphdf5": 1, @@ -25695,7 +25696,7 @@ "unzipont": 1, "unzipont_dir": 1, "unzipsfx": 25, - "unzstd": 5318, + "unzstd": 5320, "update-blastdb.py": 2, "update-serotypefinder-db": 1, "update-sort-bed-migrate-candidates": 15, @@ -25769,7 +25770,7 @@ "utmpdump": 13, "utrgff2gbrowse.pl": 15, "utrrnaseq": 13, - "uuclient": 5896, + "uuclient": 5898, "uuid": 38, "uuid-config": 38, "uuidgen": 13, @@ -26098,6 +26099,7 @@ "vcfvarstats": 32, "vcfwave": 4, "vclean": 1, + "vclust.py": 1, "vcontact2": 1, "vcontact2_gene2genome": 1, "vcontact3": 1, @@ -26475,7 +26477,7 @@ "wham": 1, "whamg": 1, "whatshap": 14, - "wheel": 3788, + "wheel": 3790, "wheezy.template": 2, "whereis": 13, "which": 1, @@ -26520,9 +26522,9 @@ "winnowmap": 3, "wiq.py": 1, "wisestork": 1, - "wish": 7482, + "wish": 7486, "wish8.5": 473, - "wish8.6": 7245, + "wish8.6": 7249, "wkhtmltoimage": 2, "wkhtmltopdf": 2, "wlmscpfs": 1, @@ -26573,7 +26575,7 @@ "write_tfrecord_species.py": 1, "writedb_entry": 1, "writedb_unit_test": 5, - "wrjpgcom": 5836, + "wrjpgcom": 5838, "ws": 2, "wsdl": 16, "wsdl2": 16, @@ -26639,7 +26641,7 @@ "x86_64-conda-linux-gnu-gfortran": 3362, "x86_64-conda-linux-gnu-gfortran.bin": 575, "x86_64-conda-linux-gnu-gprof": 3400, - "x86_64-conda-linux-gnu-ld": 5634, + "x86_64-conda-linux-gnu-ld": 5638, "x86_64-conda-linux-gnu-ld.bfd": 3400, "x86_64-conda-linux-gnu-ld.gold": 3400, "x86_64-conda-linux-gnu-nm": 3400, @@ -26675,7 +26677,7 @@ "x86_64-conda_cos6-linux-gnu-gfortran": 4131, "x86_64-conda_cos6-linux-gnu-gfortran.bin": 1344, "x86_64-conda_cos6-linux-gnu-gprof": 4167, - "x86_64-conda_cos6-linux-gnu-ld": 6468, + "x86_64-conda_cos6-linux-gnu-ld": 6472, "x86_64-conda_cos6-linux-gnu-ld.bfd": 4167, "x86_64-conda_cos6-linux-gnu-ld.gold": 4167, "x86_64-conda_cos6-linux-gnu-nm": 4167, @@ -26728,7 +26730,7 @@ "xmfa2maf": 4, "xmfa2maf.pl": 1, "xml": 1, - "xml2-config": 5440, + "xml2-config": 5441, "xml2-config.bak": 34, "xml2dcm": 1, "xml2dsr": 1, @@ -26741,10 +26743,10 @@ "xml_spellcheck": 64, "xml_split": 64, "xml_to_bas.pl": 3, - "xmlcatalog": 5440, + "xmlcatalog": 5441, "xmlget": 23, "xmlindent": 1, - "xmllint": 5440, + "xmllint": 5441, "xmlpatterns": 254, "xmlpatterns-qt4": 3, "xmlpatternsvalidator": 254, @@ -26809,16 +26811,16 @@ "xy-plot": 88, "xyalign": 1, "xyz_sfetch": 1, - "xz": 7905, - "xzcat": 7680, - "xzcmp": 7680, - "xzdec": 7680, - "xzdiff": 7680, - "xzegrep": 7680, - "xzfgrep": 7680, - "xzgrep": 7680, - "xzless": 7680, - "xzmore": 7680, + "xz": 7909, + "xzcat": 7684, + "xzcmp": 7684, + "xzdec": 7684, + "xzdiff": 7684, + "xzegrep": 7684, + "xzfgrep": 7684, + "xzgrep": 7684, + "xzless": 7684, + "xzmore": 7684, "y2racc": 7, "yacc": 4, "yacht": 1, @@ -26905,10 +26907,10 @@ "zrun": 3, "zsh": 3, "zsh-5.8": 3, - "zstd": 5318, - "zstdcat": 5318, - "zstdgrep": 5116, - "zstdless": 5116, - "zstdmt": 5318, + "zstd": 5320, + "zstdcat": 5320, + "zstdgrep": 5118, + "zstdless": 5118, + "zstdmt": 5320, "ztr_dump": 2 } \ No newline at end of file diff --git a/quay.io/biocontainers/c/cloudspades:3.16.0--h6dccd9a_2.json b/quay.io/biocontainers/c/cloudspades:3.16.0--h6dccd9a_2.json new file mode 100644 index 0000000..4356926 --- /dev/null +++ b/quay.io/biocontainers/c/cloudspades:3.16.0--h6dccd9a_2.json @@ -0,0 +1,91 @@ +{ + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "coronaspades.py": "/usr/local/bin/coronaspades.py", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "metaplasmidspades.py": "/usr/local/bin/metaplasmidspades.py", + "metaspades.py": "/usr/local/bin/metaspades.py", + "metaviralspades.py": "/usr/local/bin/metaviralspades.py", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "plasmidspades.py": "/usr/local/bin/plasmidspades.py", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "reset": "/usr/local/bin/reset", + "rnaspades.py": "/usr/local/bin/rnaspades.py", + "rnaviralspades.py": "/usr/local/bin/rnaviralspades.py", + "spades-bwa": "/usr/local/bin/spades-bwa", + "spades-convert-bin-to-fasta": "/usr/local/bin/spades-convert-bin-to-fasta", + "spades-core": "/usr/local/bin/spades-core", + "spades-corrector-core": "/usr/local/bin/spades-corrector-core", + "spades-gbuilder": "/usr/local/bin/spades-gbuilder", + "spades-gmapper": "/usr/local/bin/spades-gmapper", + "spades-gsimplifier": "/usr/local/bin/spades-gsimplifier", + "spades-hammer": "/usr/local/bin/spades-hammer", + "spades-ionhammer": "/usr/local/bin/spades-ionhammer", + "spades-kmer-estimating": "/usr/local/bin/spades-kmer-estimating", + "spades-kmercount": "/usr/local/bin/spades-kmercount", + "spades-read-filter": "/usr/local/bin/spades-read-filter", + "spades.py": "/usr/local/bin/spades.py", + "spades_init.py": "/usr/local/bin/spades_init.py", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore" +} \ No newline at end of file diff --git a/quay.io/biocontainers/f/fmsi:0.2.4--hdcf5f25_0.json b/quay.io/biocontainers/f/fmsi:0.2.4--hdcf5f25_0.json new file mode 100644 index 0000000..710416e --- /dev/null +++ b/quay.io/biocontainers/f/fmsi:0.2.4--hdcf5f25_0.json @@ -0,0 +1,3 @@ +{ + "fmsi": "/usr/local/bin/fmsi" +} \ No newline at end of file diff --git a/quay.io/biocontainers/g/gene-trajectory-python:1.0.4--pyhdfd78af_0.json b/quay.io/biocontainers/g/gene-trajectory-python:1.0.4--pyhdfd78af_0.json new file mode 100644 index 0000000..b9e41cb --- /dev/null +++ b/quay.io/biocontainers/g/gene-trajectory-python:1.0.4--pyhdfd78af_0.json @@ -0,0 +1,212 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.11": "/usr/local/bin/2to3-3.11", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl-config": "/usr/local/bin/curl-config", + "derb": "/usr/local/bin/derb", + "djpeg": "/usr/local/bin/djpeg", + "f2py": "/usr/local/bin/f2py", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "genbrk": "/usr/local/bin/genbrk", + "gencfu": "/usr/local/bin/gencfu", + "gencnval": "/usr/local/bin/gencnval", + "gendict": "/usr/local/bin/gendict", + "genrb": "/usr/local/bin/genrb", + "gif2h5": "/usr/local/bin/gif2h5", + "glpsol": "/usr/local/bin/glpsol", + "gss-client": "/usr/local/bin/gss-client", + "h52gif": "/usr/local/bin/h52gif", + "h5c++": "/usr/local/bin/h5c++", + "h5cc": "/usr/local/bin/h5cc", + "h5clear": "/usr/local/bin/h5clear", + "h5copy": "/usr/local/bin/h5copy", + "h5debug": "/usr/local/bin/h5debug", + "h5delete": "/usr/local/bin/h5delete", + "h5diff": "/usr/local/bin/h5diff", + "h5dump": "/usr/local/bin/h5dump", + "h5fc": "/usr/local/bin/h5fc", + "h5format_convert": "/usr/local/bin/h5format_convert", + "h5fuse.sh": "/usr/local/bin/h5fuse.sh", + "h5import": "/usr/local/bin/h5import", + "h5jam": "/usr/local/bin/h5jam", + "h5ls": "/usr/local/bin/h5ls", + "h5mkgrp": "/usr/local/bin/h5mkgrp", + "h5perf_serial": "/usr/local/bin/h5perf_serial", + "h5redeploy": "/usr/local/bin/h5redeploy", + "h5repack": "/usr/local/bin/h5repack", + "h5repart": "/usr/local/bin/h5repart", + "h5stat": "/usr/local/bin/h5stat", + "h5tools_test_utils": "/usr/local/bin/h5tools_test_utils", + "h5unjam": "/usr/local/bin/h5unjam", + "h5watch": "/usr/local/bin/h5watch", + "hwloc-annotate": "/usr/local/bin/hwloc-annotate", + "hwloc-bind": "/usr/local/bin/hwloc-bind", + "hwloc-calc": "/usr/local/bin/hwloc-calc", + "hwloc-compress-dir": "/usr/local/bin/hwloc-compress-dir", + "hwloc-diff": "/usr/local/bin/hwloc-diff", + "hwloc-distrib": "/usr/local/bin/hwloc-distrib", + "hwloc-gather-cpuid": "/usr/local/bin/hwloc-gather-cpuid", + "hwloc-gather-topology": "/usr/local/bin/hwloc-gather-topology", + "hwloc-info": "/usr/local/bin/hwloc-info", + "hwloc-ls": "/usr/local/bin/hwloc-ls", + "hwloc-patch": "/usr/local/bin/hwloc-patch", + "hwloc-ps": "/usr/local/bin/hwloc-ps", + "icu-config": "/usr/local/bin/icu-config", + "icuexportdata": "/usr/local/bin/icuexportdata", + "icuinfo": "/usr/local/bin/icuinfo", + "idle3": "/usr/local/bin/idle3", + "idle3.11": "/usr/local/bin/idle3.11", + "igraph": "/usr/local/bin/igraph", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "lstopo": "/usr/local/bin/lstopo", + "lstopo-no-graphics": "/usr/local/bin/lstopo-no-graphics", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "makeconv": "/usr/local/bin/makeconv", + "natsort": "/usr/local/bin/natsort", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "numba": "/usr/local/bin/numba", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pkgdata": "/usr/local/bin/pkgdata", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.11": "/usr/local/bin/pydoc3.11", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.11": "/usr/local/bin/python3.11", + "python3.11-config": "/usr/local/bin/python3.11-config", + "qconvex": "/usr/local/bin/qconvex", + "qdelaunay": "/usr/local/bin/qdelaunay", + "qhalf": "/usr/local/bin/qhalf", + "qhull": "/usr/local/bin/qhull", + "qvoronoi": "/usr/local/bin/qvoronoi", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rbox": "/usr/local/bin/rbox", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "scanpy": "/usr/local/bin/scanpy", + "sclient": "/usr/local/bin/sclient", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tqdm": "/usr/local/bin/tqdm", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xml2-config": "/usr/local/bin/xml2-config", + "xmlcatalog": "/usr/local/bin/xmlcatalog", + "xmllint": "/usr/local/bin/xmllint", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/i/inmoose:0.7.2--py310h24e864b_0.json b/quay.io/biocontainers/i/inmoose:0.7.2--py310h24e864b_0.json new file mode 100644 index 0000000..e26094b --- /dev/null +++ b/quay.io/biocontainers/i/inmoose:0.7.2--py310h24e864b_0.json @@ -0,0 +1,179 @@ +{ + "2to3": "/usr/local/bin/2to3", + "2to3-3.10": "/usr/local/bin/2to3-3.10", + "adig": "/usr/local/bin/adig", + "ahost": "/usr/local/bin/ahost", + "brotli": "/usr/local/bin/brotli", + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "cjpeg": "/usr/local/bin/cjpeg", + "clear": "/usr/local/bin/clear", + "compile_et": "/usr/local/bin/compile_et", + "curl-config": "/usr/local/bin/curl-config", + "djpeg": "/usr/local/bin/djpeg", + "f2py": "/usr/local/bin/f2py", + "fax2ps": "/usr/local/bin/fax2ps", + "fax2tiff": "/usr/local/bin/fax2tiff", + "fonttools": "/usr/local/bin/fonttools", + "freetype-config": "/usr/local/bin/freetype-config", + "gif2h5": "/usr/local/bin/gif2h5", + "gss-client": "/usr/local/bin/gss-client", + "h52gif": "/usr/local/bin/h52gif", + "h5c++": "/usr/local/bin/h5c++", + "h5cc": "/usr/local/bin/h5cc", + "h5clear": "/usr/local/bin/h5clear", + "h5copy": "/usr/local/bin/h5copy", + "h5debug": "/usr/local/bin/h5debug", + "h5delete": "/usr/local/bin/h5delete", + "h5diff": "/usr/local/bin/h5diff", + "h5dump": "/usr/local/bin/h5dump", + "h5fc": "/usr/local/bin/h5fc", + "h5format_convert": "/usr/local/bin/h5format_convert", + "h5fuse.sh": "/usr/local/bin/h5fuse.sh", + "h5import": "/usr/local/bin/h5import", + "h5jam": "/usr/local/bin/h5jam", + "h5ls": "/usr/local/bin/h5ls", + "h5mkgrp": "/usr/local/bin/h5mkgrp", + "h5perf_serial": "/usr/local/bin/h5perf_serial", + "h5redeploy": "/usr/local/bin/h5redeploy", + "h5repack": "/usr/local/bin/h5repack", + "h5repart": "/usr/local/bin/h5repart", + "h5stat": "/usr/local/bin/h5stat", + "h5tools_test_utils": "/usr/local/bin/h5tools_test_utils", + "h5unjam": "/usr/local/bin/h5unjam", + "h5watch": "/usr/local/bin/h5watch", + "idle3": "/usr/local/bin/idle3", + "idle3.10": "/usr/local/bin/idle3.10", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "jpegtran": "/usr/local/bin/jpegtran", + "jpgicc": "/usr/local/bin/jpgicc", + "k5srvutil": "/usr/local/bin/k5srvutil", + "kadmin": "/usr/local/bin/kadmin", + "kdestroy": "/usr/local/bin/kdestroy", + "keyctl": "/usr/local/bin/keyctl", + "kinit": "/usr/local/bin/kinit", + "klist": "/usr/local/bin/klist", + "kpasswd": "/usr/local/bin/kpasswd", + "krb5-config": "/usr/local/bin/krb5-config", + "ksu": "/usr/local/bin/ksu", + "kswitch": "/usr/local/bin/kswitch", + "ktutil": "/usr/local/bin/ktutil", + "kvno": "/usr/local/bin/kvno", + "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip", + "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip", + "libpng-config": "/usr/local/bin/libpng-config", + "libpng16-config": "/usr/local/bin/libpng16-config", + "linkicc": "/usr/local/bin/linkicc", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "natsort": "/usr/local/bin/natsort", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "nghttp": "/usr/local/bin/nghttp", + "nghttpd": "/usr/local/bin/nghttpd", + "nghttpx": "/usr/local/bin/nghttpx", + "openssl": "/usr/local/bin/openssl", + "opj_compress": "/usr/local/bin/opj_compress", + "opj_decompress": "/usr/local/bin/opj_decompress", + "opj_dump": "/usr/local/bin/opj_dump", + "pal2rgb": "/usr/local/bin/pal2rgb", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "png-fix-itxt": "/usr/local/bin/png-fix-itxt", + "pngfix": "/usr/local/bin/pngfix", + "ppm2tiff": "/usr/local/bin/ppm2tiff", + "psicc": "/usr/local/bin/psicc", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.10": "/usr/local/bin/pydoc3.10", + "pyftmerge": "/usr/local/bin/pyftmerge", + "pyftsubset": "/usr/local/bin/pyftsubset", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.10": "/usr/local/bin/python3.10", + "python3.10-config": "/usr/local/bin/python3.10-config", + "qconvex": "/usr/local/bin/qconvex", + "qdelaunay": "/usr/local/bin/qdelaunay", + "qhalf": "/usr/local/bin/qhalf", + "qhull": "/usr/local/bin/qhull", + "qvoronoi": "/usr/local/bin/qvoronoi", + "raw2tiff": "/usr/local/bin/raw2tiff", + "rbox": "/usr/local/bin/rbox", + "rdjpgcom": "/usr/local/bin/rdjpgcom", + "reset": "/usr/local/bin/reset", + "sclient": "/usr/local/bin/sclient", + "sim_client": "/usr/local/bin/sim_client", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "tiff2bw": "/usr/local/bin/tiff2bw", + "tiff2pdf": "/usr/local/bin/tiff2pdf", + "tiff2ps": "/usr/local/bin/tiff2ps", + "tiff2rgba": "/usr/local/bin/tiff2rgba", + "tiffcmp": "/usr/local/bin/tiffcmp", + "tiffcp": "/usr/local/bin/tiffcp", + "tiffcrop": "/usr/local/bin/tiffcrop", + "tiffdither": "/usr/local/bin/tiffdither", + "tiffdump": "/usr/local/bin/tiffdump", + "tiffinfo": "/usr/local/bin/tiffinfo", + "tiffmedian": "/usr/local/bin/tiffmedian", + "tiffset": "/usr/local/bin/tiffset", + "tiffsplit": "/usr/local/bin/tiffsplit", + "tificc": "/usr/local/bin/tificc", + "tjbench": "/usr/local/bin/tjbench", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "transicc": "/usr/local/bin/transicc", + "tset": "/usr/local/bin/tset", + "ttx": "/usr/local/bin/ttx", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "unzstd": "/usr/local/bin/unzstd", + "uuclient": "/usr/local/bin/uuclient", + "wheel": "/usr/local/bin/wheel", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "wrjpgcom": "/usr/local/bin/wrjpgcom", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore", + "zstd": "/usr/local/bin/zstd", + "zstdcat": "/usr/local/bin/zstdcat", + "zstdgrep": "/usr/local/bin/zstdgrep", + "zstdless": "/usr/local/bin/zstdless", + "zstdmt": "/usr/local/bin/zstdmt" +} \ No newline at end of file diff --git a/quay.io/biocontainers/v/vclust:1.2.7--py313h9ee0642_0.json b/quay.io/biocontainers/v/vclust:1.2.7--py313h9ee0642_0.json new file mode 100644 index 0000000..c7dc996 --- /dev/null +++ b/quay.io/biocontainers/v/vclust:1.2.7--py313h9ee0642_0.json @@ -0,0 +1,71 @@ +{ + "bunzip2": "/usr/local/bin/bunzip2", + "bzcat": "/usr/local/bin/bzcat", + "bzcmp": "/usr/local/bin/bzcmp", + "bzdiff": "/usr/local/bin/bzdiff", + "bzegrep": "/usr/local/bin/bzegrep", + "bzfgrep": "/usr/local/bin/bzfgrep", + "bzgrep": "/usr/local/bin/bzgrep", + "bzip2": "/usr/local/bin/bzip2", + "bzip2recover": "/usr/local/bin/bzip2recover", + "bzless": "/usr/local/bin/bzless", + "bzmore": "/usr/local/bin/bzmore", + "c_rehash": "/usr/local/bin/c_rehash", + "captoinfo": "/usr/local/bin/captoinfo", + "clear": "/usr/local/bin/clear", + "idle3": "/usr/local/bin/idle3", + "idle3.13": "/usr/local/bin/idle3.13", + "infocmp": "/usr/local/bin/infocmp", + "infotocap": "/usr/local/bin/infotocap", + "lzcat": "/usr/local/bin/lzcat", + "lzcmp": "/usr/local/bin/lzcmp", + "lzdiff": "/usr/local/bin/lzdiff", + "lzegrep": "/usr/local/bin/lzegrep", + "lzfgrep": "/usr/local/bin/lzfgrep", + "lzgrep": "/usr/local/bin/lzgrep", + "lzless": "/usr/local/bin/lzless", + "lzma": "/usr/local/bin/lzma", + "lzmadec": "/usr/local/bin/lzmadec", + "lzmainfo": "/usr/local/bin/lzmainfo", + "lzmore": "/usr/local/bin/lzmore", + "ncurses6-config": "/usr/local/bin/ncurses6-config", + "ncursesw6-config": "/usr/local/bin/ncursesw6-config", + "openssl": "/usr/local/bin/openssl", + "pip": "/usr/local/bin/pip", + "pip3": "/usr/local/bin/pip3", + "pydoc": "/usr/local/bin/pydoc", + "pydoc3": "/usr/local/bin/pydoc3", + "pydoc3.13": "/usr/local/bin/pydoc3.13", + "python": "/usr/local/bin/python", + "python3": "/usr/local/bin/python3", + "python3-config": "/usr/local/bin/python3-config", + "python3.1": "/usr/local/bin/python3.1", + "python3.13": "/usr/local/bin/python3.13", + "python3.13-config": "/usr/local/bin/python3.13-config", + "reset": "/usr/local/bin/reset", + "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer", + "tabs": "/usr/local/bin/tabs", + "tclsh": "/usr/local/bin/tclsh", + "tclsh8.6": "/usr/local/bin/tclsh8.6", + "tic": "/usr/local/bin/tic", + "toe": "/usr/local/bin/toe", + "tput": "/usr/local/bin/tput", + "tset": "/usr/local/bin/tset", + "unlzma": "/usr/local/bin/unlzma", + "unxz": "/usr/local/bin/unxz", + "vclust.py": "/usr/local/bin/vclust.py", + "wish": "/usr/local/bin/wish", + "wish8.6": "/usr/local/bin/wish8.6", + "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld", + "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld", + "xz": "/usr/local/bin/xz", + "xzcat": "/usr/local/bin/xzcat", + "xzcmp": "/usr/local/bin/xzcmp", + "xzdec": "/usr/local/bin/xzdec", + "xzdiff": "/usr/local/bin/xzdiff", + "xzegrep": "/usr/local/bin/xzegrep", + "xzfgrep": "/usr/local/bin/xzfgrep", + "xzgrep": "/usr/local/bin/xzgrep", + "xzless": "/usr/local/bin/xzless", + "xzmore": "/usr/local/bin/xzmore" +} \ No newline at end of file