From 3e7ec59f4c4a5600424d3aec7e611315a40a7cb9 Mon Sep 17 00:00:00 2001
From: github-actions <github-actions@users.noreply.github.com>
Date: Mon, 1 Jan 2024 00:48:16 +0000
Subject: [PATCH] Automated deployment with updated cache 2024-01-01

---
 counts.json                                   | 3331 +++++++++--------
 .../a/annosine2:1.0.4--pyh7cba7a3_0.json      |  451 +++
 .../c/cellbender:0.3.0--pyhdfd78af_0.json     |  246 ++
 3 files changed, 2400 insertions(+), 1628 deletions(-)
 create mode 100644 quay.io/biocontainers/a/annosine2:1.0.4--pyh7cba7a3_0.json
 create mode 100644 quay.io/biocontainers/c/cellbender:0.3.0--pyhdfd78af_0.json

diff --git a/counts.json b/counts.json
index ddd74e2..1e6297f 100644
--- a/counts.json
+++ b/counts.json
@@ -2326,16 +2326,16 @@
     "2csfastq_1csfastq": 1,
     "2ft": 2,
     "2ndscore": 1,
-    "2to3": 3421,
-    "2to3-3.10": 762,
+    "2to3": 3507,
+    "2to3-3.10": 766,
     "2to3-3.11": 252,
-    "2to3-3.12": 37,
+    "2to3-3.12": 114,
     "2to3-3.4": 6,
     "2to3-3.5": 103,
     "2to3-3.6": 341,
-    "2to3-3.7": 381,
-    "2to3-3.8": 568,
-    "2to3-3.9": 641,
+    "2to3-3.7": 382,
+    "2to3-3.8": 570,
+    "2to3-3.9": 643,
     "3EdgeTests": 1,
     "3_1_filter_mapQ_for_sam.pl": 1,
     "3seq": 1,
@@ -2755,7 +2755,7 @@
     "Corrector_HA": 1,
     "CountUnmatchedSampleIndices": 1,
     "CoverageOfEachTrans": 1,
-    "CreateDOMDocument": 45,
+    "CreateDOMDocument": 47,
     "CreateGermlines.py": 2,
     "CreateIntervalsFiles": 1,
     "CrossMap.py": 3,
@@ -2764,7 +2764,7 @@
     "CufflinksGTF_to_CodingQuarryGFF3.py": 2,
     "Cur+": 2,
     "CycleFold": 4,
-    "Cytoscape": 13,
+    "Cytoscape": 14,
     "D2-AbundancesPhyloseq.R": 1,
     "D2-AlphaDivPhyloseq.R": 1,
     "D2-BetaDivPhyloseq.R": 1,
@@ -2808,8 +2808,8 @@
     "DNA2StdRegion": 1,
     "DNAMarkMaker": 1,
     "DNN_models.py": 1,
-    "DOMCount": 45,
-    "DOMPrint": 45,
+    "DOMCount": 47,
+    "DOMPrint": 47,
     "DRAM-setup.py": 1,
     "DRAM-v.py": 1,
     "DRAM.py": 1,
@@ -2825,7 +2825,7 @@
     "DatabaseFilter": 2,
     "DatabaseParser": 2,
     "DatabaseSuitability": 1,
-    "DateRepeats": 10,
+    "DateRepeats": 11,
     "DeMeanderize": 2,
     "Decharger": 2,
     "DeconPluginLib.dll": 1,
@@ -2856,7 +2856,7 @@
     "DrTransformer.py": 1,
     "DrawGram.jar": 9,
     "DrawTree.jar": 9,
-    "DupMasker": 11,
+    "DupMasker": 12,
     "DuplexFold": 4,
     "DuplexFold-smp": 4,
     "DynalignDotPlot": 4,
@@ -2895,7 +2895,7 @@
     "EnrichmentAnalysis": 1,
     "EnrichmentAnalysisForSingleTrans": 1,
     "EnsembleEnergy": 4,
-    "EnumVal": 45,
+    "EnumVal": 47,
     "Epifany": 1,
     "Epsilon-NB.py": 1,
     "ErrorCorrection": 1,
@@ -2948,7 +2948,7 @@
     "FEELnc_pipeline.sh": 1,
     "FEELnc_tpLevel2gnLevelClassification.R": 1,
     "FEELnc_tpLevel2gnLevelClassification.R.bak": 1,
-    "FET.pl": 40,
+    "FET.pl": 41,
     "FEW.pl": 6,
     "FFEval": 2,
     "FGAP": 1,
@@ -3391,9 +3391,9 @@
     "MZmine.bat": 1,
     "MaRaClusterAdapter": 2,
     "Maaslin2.R": 1,
-    "Magick++-config": 69,
-    "MagickCore-config": 69,
-    "MagickWand-config": 69,
+    "Magick++-config": 75,
+    "MagickCore-config": 75,
+    "MagickWand-config": 75,
     "Magphi": 1,
     "MakeBootstraps.py": 1,
     "MakeDNADatabase.py": 2,
@@ -3459,7 +3459,7 @@
     "MaxQuantTaskCore.dll": 1,
     "MaxQuantTaskCore.runtimeconfig.json": 1,
     "Mayu.pl": 2,
-    "MemParse": 45,
+    "MemParse": 47,
     "MentaLiST.jl": 2,
     "MergeContigs": 16,
     "MergeContigs.py": 1,
@@ -3701,14 +3701,14 @@
     "PM-select-taxa": 1,
     "PM-split-seq": 1,
     "PM-update-taxa": 1,
-    "PParse": 45,
+    "PParse": 47,
     "PREFACE": 1,
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     "PReFerSim": 1,
     "PSCM_to_PSEM": 1,
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     "PSMFeatureExtractor": 2,
-    "PSVIWriter": 45,
+    "PSVIWriter": 47,
     "PTMProphetParser": 2,
     "PTModel": 2,
     "PTPredict": 2,
@@ -3833,7 +3833,7 @@
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     "ProbeMatch": 5,
     "ProcessPausingScore": 1,
-    "ProcessRepeats": 11,
+    "ProcessRepeats": 12,
     "Profex": 2,
     "Profile": 3,
     "ProgDynOptim.py": 1,
@@ -3875,7 +3875,7 @@
     "QueueingSystem.dll": 1,
     "QuickDeconvolution": 1,
     "QuickSNP.py": 1,
-    "R": 4568,
+    "R": 4629,
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     "R-scape-sim-nobps": 2,
@@ -3902,7 +3902,7 @@
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     "RLPipes": 1,
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+    "RM2Bed.py": 10,
     "RNA2Dfold": 49,
     "RNADigestor": 2,
     "RNALalifold": 49,
@@ -4056,7 +4056,7 @@
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     "RecombinationSummary.r": 1,
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-    "Redirect": 45,
+    "Redirect": 47,
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     "RefMapOpt.sh": 2,
     "ReferenceOpt.sh": 2,
@@ -4070,10 +4070,10 @@
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     "RepeatClassifier": 3,
     "RepeatFinder": 1,
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+    "RepeatMasker": 12,
     "RepeatMasker.py": 3,
     "RepeatModeler": 3,
-    "RepeatProteinMask": 11,
+    "RepeatProteinMask": 12,
     "RepeatScout": 4,
     "ReplaceInvalidChars": 1,
     "ReplaceInvalidChars.cpp": 1,
@@ -4101,7 +4101,7 @@
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-    "Rscript": 4569,
+    "Rscript": 4630,
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@@ -4110,19 +4110,19 @@
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     "SASpector": 1,
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-    "SAX2Print": 45,
-    "SAXCount": 45,
-    "SAXPrint": 45,
+    "SAX2Count": 47,
+    "SAX2Print": 47,
+    "SAXCount": 47,
+    "SAXPrint": 47,
     "SCALOP": 1,
     "SCFtoCTG": 1,
-    "SCMPrint": 45,
+    "SCMPrint": 47,
     "SCNIC_analysis.py": 1,
     "SEACR_1.3.R": 1,
     "SEACR_1.3.sh": 1,
     "SELAM": 1,
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-    "SEnumVal": 45,
+    "SEnumVal": 47,
     "SGA-ICE.py": 1,
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@@ -4304,7 +4304,7 @@
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     "StatisticSingle.py": 2,
     "Statistics.pm": 5,
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+    "StdInParse": 47,
     "StereoGene": 1,
     "StoatyDive.py": 1,
     "Stockholm.pm": 3,
@@ -4365,7 +4365,7 @@
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     "TMscore": 5,
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+    "TOBIAS": 2,
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     "TPMCalculator": 1,
     "TPSI_btab_to_gff3.pl": 1,
@@ -4456,6 +4456,7 @@
     "Utils.dll": 2,
     "UtilsWf.dll": 2,
     "UtilsWpf.dll": 2,
+    "VERSION": 1,
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     "VIBRANT_extract_nucleotide.py": 1,
     "VIBRANT_extract_protein.py": 1,
@@ -4504,7 +4505,7 @@
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     "XGBoost.dll": 1,
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-    "XInclude": 45,
+    "XInclude": 47,
     "XMLValidator": 2,
     "XPressPeptideParser": 2,
     "XPressProteinRatioParser": 2,
@@ -4781,7 +4782,7 @@
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@@ -4860,7 +4861,7 @@
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+    "accn-at-a-time": 240,
     "acdc": 24,
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     "acdc-make-fastas": 1,
@@ -4872,7 +4873,7 @@
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@@ -4884,9 +4885,9 @@
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-    "acyclic": 191,
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+    "activate-global-python-argcomplete": 330,
+    "acyclic": 198,
     "adVNTR-Filtering": 1,
     "ada_model_builder_ntChange.R": 1,
     "ada_model_predictor.R": 1,
@@ -4960,7 +4961,7 @@
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+    "adig": 4412,
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     "adjustRedunGroupFile.pl": 5,
     "adjustScanRankerScoreByGroup": 2,
@@ -5076,7 +5077,7 @@
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+    "ahost": 4412,
     "airr-tools": 5,
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@@ -5119,7 +5120,7 @@
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     "align-cache.3": 2,
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-    "align-columns": 180,
+    "align-columns": 183,
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@@ -5181,7 +5182,7 @@
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+    "alimask": 170,
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     "allVsAll.sh": 2,
@@ -5238,7 +5239,7 @@
     "ambpdb": 6,
     "ambtest": 1,
     "ame": 13,
-    "amino-acid-composition": 268,
+    "amino-acid-composition": 271,
     "aminoextract": 2,
     "amk_ccc": 1,
     "amk_fft2": 1,
@@ -5311,7 +5312,7 @@
     "andi": 1,
     "anglerfish": 1,
     "angsd": 1,
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+    "animate": 75,
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     "ann_exons_ens.pl": 7,
@@ -5338,13 +5339,15 @@
     "ann_upfeats_pfam_www_e.pl": 7,
     "annembed": 1,
     "annonars": 1,
+    "annosine2": 1,
+    "annot-tsv": 1,
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@@ -5577,7 +5580,7 @@
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@@ -5661,7 +5664,7 @@
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@@ -5719,7 +5722,7 @@
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@@ -5745,7 +5748,7 @@
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@@ -5796,7 +5799,7 @@
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@@ -5894,9 +5897,9 @@
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@@ -5946,7 +5949,7 @@
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@@ -6026,9 +6029,9 @@
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     "bamPEFragmentSize": 10,
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@@ -6101,7 +6104,7 @@
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@@ -6183,10 +6186,10 @@
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@@ -6194,8 +6197,8 @@
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+    "basename": 78,
+    "basenc": 75,
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@@ -6318,9 +6321,9 @@
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@@ -6331,7 +6334,7 @@
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@@ -6343,7 +6346,7 @@
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-    "bed12ToBed6": 261,
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@@ -6353,17 +6356,17 @@
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-    "bed2region": 29,
+    "bed2region": 30,
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     "bedGraphToBigWig": 18,
     "bedSort": 2,
-    "bedToBam": 261,
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     "bedToBigBed": 18,
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@@ -6397,11 +6400,11 @@
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@@ -6426,7 +6429,7 @@
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     "beta_diversity_through_plots.py": 1,
     "beta_significance.py": 1,
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@@ -6441,9 +6444,9 @@
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@@ -6475,6 +6478,7 @@
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@@ -6532,7 +6536,7 @@
     "bioformats_package.jar": 1,
     "biohansel": 1,
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+    "biom": 27,
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     "biom_to_stdBiom.py": 1,
     "biom_to_tsv.py": 1,
@@ -6614,7 +6618,7 @@
     "blast2lca": 1,
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+    "blast2sam.pl": 488,
     "blastMapAnalyzer2.pl": 1,
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     "blastMining_lca.sh": 1,
@@ -6624,10 +6628,10 @@
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     "blast_format_unit_test": 5,
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+    "blast_formatter": 304,
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     "blast_services_unit_test": 5,
     "blast_to_bed.sh": 1,
@@ -6639,26 +6643,26 @@
     "blastbesties": 1,
     "blastcl3": 1,
     "blastclust": 28,
-    "blastdb_aliastool": 301,
-    "blastdb_convert": 17,
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     "blastdb_format_unit_test": 5,
-    "blastdb_path": 17,
-    "blastdbcheck": 301,
-    "blastdbcmd": 301,
-    "blastdbcp": 49,
+    "blastdb_path": 18,
+    "blastdbcheck": 304,
+    "blastdbcmd": 304,
+    "blastdbcp": 50,
     "blastdiag_unit_test": 5,
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     "blastextend_unit_test": 5,
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     "blastinput_unit_test": 5,
-    "blastn": 301,
-    "blastn_vdb": 19,
+    "blastn": 304,
+    "blastn_vdb": 21,
     "blastoptions_unit_test": 5,
-    "blastp": 301,
+    "blastp": 304,
     "blastpgp": 28,
     "blastsetup_unit_test": 5,
-    "blastx": 301,
+    "blastx": 304,
     "blastzWrapper": 1,
     "blat": 19,
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@@ -6681,7 +6685,7 @@
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@@ -12074,13 +12086,13 @@
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@@ -13399,7 +13413,7 @@
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@@ -13464,7 +13478,7 @@
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@@ -13521,7 +13535,7 @@
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@@ -13534,7 +13548,7 @@
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@@ -13583,21 +13597,21 @@
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@@ -13628,24 +13642,25 @@
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@@ -13661,11 +13676,11 @@
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@@ -13685,27 +13700,28 @@
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@@ -25244,15 +25319,15 @@
     "zfp": 18,
     "zga": 1,
     "zgrep": 16,
-    "zic": 40,
+    "zic": 42,
     "zip": 14,
     "zipHomerResults.pl": 5,
-    "zipcmp": 87,
-    "zipdetails": 1630,
+    "zipcmp": 89,
+    "zipdetails": 1644,
     "zipgrep": 25,
     "zipinfo": 25,
-    "zipmerge": 87,
-    "ziptool": 87,
+    "zipmerge": 89,
+    "ziptool": 89,
     "zless": 5,
     "zlib.net.dll": 4,
     "zlib_decompress": 5,
@@ -25261,7 +25336,7 @@
     "znew": 16,
     "zol": 1,
     "zoom": 1,
-    "zoom2sam.pl": 486,
+    "zoom2sam.pl": 488,
     "zopfli": 18,
     "zopflipng": 18,
     "zorro": 1,
@@ -25271,10 +25346,10 @@
     "zrun": 3,
     "zsh": 3,
     "zsh-5.8": 3,
-    "zstd": 4982,
-    "zstdcat": 4982,
-    "zstdgrep": 4780,
-    "zstdless": 4780,
-    "zstdmt": 4982,
+    "zstd": 5056,
+    "zstdcat": 5056,
+    "zstdgrep": 4854,
+    "zstdless": 4854,
+    "zstdmt": 5056,
     "ztr_dump": 2
 }
\ No newline at end of file
diff --git a/quay.io/biocontainers/a/annosine2:1.0.4--pyh7cba7a3_0.json b/quay.io/biocontainers/a/annosine2:1.0.4--pyh7cba7a3_0.json
new file mode 100644
index 0000000..3621119
--- /dev/null
+++ b/quay.io/biocontainers/a/annosine2:1.0.4--pyh7cba7a3_0.json
@@ -0,0 +1,451 @@
+{
+    "2to3": "/usr/local/bin/2to3",
+    "2to3-3.12": "/usr/local/bin/2to3-3.12",
+    "DateRepeats": "/usr/local/bin/DateRepeats",
+    "DupMasker": "/usr/local/bin/DupMasker",
+    "FET.pl": "/usr/local/bin/FET.pl",
+    "ProcessRepeats": "/usr/local/bin/ProcessRepeats",
+    "RM2Bed.py": "/usr/local/bin/RM2Bed.py",
+    "RepeatMasker": "/usr/local/bin/RepeatMasker",
+    "RepeatProteinMask": "/usr/local/bin/RepeatProteinMask",
+    "accn-at-a-time": "/usr/local/bin/accn-at-a-time",
+    "adig": "/usr/local/bin/adig",
+    "ahost": "/usr/local/bin/ahost",
+    "align-columns": "/usr/local/bin/align-columns",
+    "alimask": "/usr/local/bin/alimask",
+    "amino-acid-composition": "/usr/local/bin/amino-acid-composition",
+    "annosine2": "/usr/local/bin/annosine2",
+    "archive-pubmed": "/usr/local/bin/archive-pubmed",
+    "asn2xml": "/usr/local/bin/asn2xml",
+    "autopoint": "/usr/local/bin/autopoint",
+    "between-two-genes": "/usr/local/bin/between-two-genes",
+    "blast_formatter": "/usr/local/bin/blast_formatter",
+    "blast_report": "/usr/local/bin/blast_report",
+    "blastdb_aliastool": "/usr/local/bin/blastdb_aliastool",
+    "blastdb_convert": "/usr/local/bin/blastdb_convert",
+    "blastdb_path": "/usr/local/bin/blastdb_path",
+    "blastdbcheck": "/usr/local/bin/blastdbcheck",
+    "blastdbcmd": "/usr/local/bin/blastdbcmd",
+    "blastdbcp": "/usr/local/bin/blastdbcp",
+    "blastn": "/usr/local/bin/blastn",
+    "blastp": "/usr/local/bin/blastp",
+    "blastx": "/usr/local/bin/blastx",
+    "blst2tkns": "/usr/local/bin/blst2tkns",
+    "brotli": "/usr/local/bin/brotli",
+    "buildRMLibFromEMBL.pl": "/usr/local/bin/buildRMLibFromEMBL.pl",
+    "buildSummary.pl": "/usr/local/bin/buildSummary.pl",
+    "build_env_setup.sh": "/usr/local/bin/build_env_setup.sh",
+    "bunzip2": "/usr/local/bin/bunzip2",
+    "bzcat": "/usr/local/bin/bzcat",
+    "bzcmp": "/usr/local/bin/bzcmp",
+    "bzdiff": "/usr/local/bin/bzdiff",
+    "bzegrep": "/usr/local/bin/bzegrep",
+    "bzfgrep": "/usr/local/bin/bzfgrep",
+    "bzgrep": "/usr/local/bin/bzgrep",
+    "bzip2": "/usr/local/bin/bzip2",
+    "bzip2recover": "/usr/local/bin/bzip2recover",
+    "bzless": "/usr/local/bin/bzless",
+    "bzmore": "/usr/local/bin/bzmore",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "calcDivergenceFromAlign.pl": "/usr/local/bin/calcDivergenceFromAlign.pl",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "cd-hit": "/usr/local/bin/cd-hit",
+    "cd-hit-2d": "/usr/local/bin/cd-hit-2d",
+    "cd-hit-2d-para.pl": "/usr/local/bin/cd-hit-2d-para.pl",
+    "cd-hit-454": "/usr/local/bin/cd-hit-454",
+    "cd-hit-clstr_2_blm8.pl": "/usr/local/bin/cd-hit-clstr_2_blm8.pl",
+    "cd-hit-div": "/usr/local/bin/cd-hit-div",
+    "cd-hit-div.pl": "/usr/local/bin/cd-hit-div.pl",
+    "cd-hit-est": "/usr/local/bin/cd-hit-est",
+    "cd-hit-est-2d": "/usr/local/bin/cd-hit-est-2d",
+    "cd-hit-para.pl": "/usr/local/bin/cd-hit-para.pl",
+    "cjpeg": "/usr/local/bin/cjpeg",
+    "cleanup-blastdb-volumes.py": "/usr/local/bin/cleanup-blastdb-volumes.py",
+    "clear": "/usr/local/bin/clear",
+    "clstr2tree.pl": "/usr/local/bin/clstr2tree.pl",
+    "clstr2txt.pl": "/usr/local/bin/clstr2txt.pl",
+    "clstr2xml.pl": "/usr/local/bin/clstr2xml.pl",
+    "clstr_cut.pl": "/usr/local/bin/clstr_cut.pl",
+    "clstr_list.pl": "/usr/local/bin/clstr_list.pl",
+    "clstr_list_sort.pl": "/usr/local/bin/clstr_list_sort.pl",
+    "clstr_merge.pl": "/usr/local/bin/clstr_merge.pl",
+    "clstr_merge_noorder.pl": "/usr/local/bin/clstr_merge_noorder.pl",
+    "clstr_quality_eval.pl": "/usr/local/bin/clstr_quality_eval.pl",
+    "clstr_quality_eval_by_link.pl": "/usr/local/bin/clstr_quality_eval_by_link.pl",
+    "clstr_reduce.pl": "/usr/local/bin/clstr_reduce.pl",
+    "clstr_renumber.pl": "/usr/local/bin/clstr_renumber.pl",
+    "clstr_rep.pl": "/usr/local/bin/clstr_rep.pl",
+    "clstr_reps_faa_rev.pl": "/usr/local/bin/clstr_reps_faa_rev.pl",
+    "clstr_rev.pl": "/usr/local/bin/clstr_rev.pl",
+    "clstr_select.pl": "/usr/local/bin/clstr_select.pl",
+    "clstr_select_rep.pl": "/usr/local/bin/clstr_select_rep.pl",
+    "clstr_size_histogram.pl": "/usr/local/bin/clstr_size_histogram.pl",
+    "clstr_size_stat.pl": "/usr/local/bin/clstr_size_stat.pl",
+    "clstr_sort_by.pl": "/usr/local/bin/clstr_sort_by.pl",
+    "clstr_sort_prot_by.pl": "/usr/local/bin/clstr_sort_prot_by.pl",
+    "clstr_sql_tbl.pl": "/usr/local/bin/clstr_sql_tbl.pl",
+    "clstr_sql_tbl_sort.pl": "/usr/local/bin/clstr_sql_tbl_sort.pl",
+    "compile_et": "/usr/local/bin/compile_et",
+    "conda_build.sh": "/usr/local/bin/conda_build.sh",
+    "convert2blastmask": "/usr/local/bin/convert2blastmask",
+    "corelist": "/usr/local/bin/corelist",
+    "corepack": "/usr/local/bin/corepack",
+    "cpan": "/usr/local/bin/cpan",
+    "createRepeatLandscape.pl": "/usr/local/bin/createRepeatLandscape.pl",
+    "csv2xml": "/usr/local/bin/csv2xml",
+    "curl-config": "/usr/local/bin/curl-config",
+    "datatool": "/usr/local/bin/datatool",
+    "deltablast": "/usr/local/bin/deltablast",
+    "derb": "/usr/local/bin/derb",
+    "disambiguate-nucleotides": "/usr/local/bin/disambiguate-nucleotides",
+    "djpeg": "/usr/local/bin/djpeg",
+    "download-ncbi-data": "/usr/local/bin/download-ncbi-data",
+    "download-ncbi-software": "/usr/local/bin/download-ncbi-software",
+    "download-pubmed": "/usr/local/bin/download-pubmed",
+    "download-sequence": "/usr/local/bin/download-sequence",
+    "dupliconToSVG.pl": "/usr/local/bin/dupliconToSVG.pl",
+    "dustmasker": "/usr/local/bin/dustmasker",
+    "easel": "/usr/local/bin/easel",
+    "ecommon.sh": "/usr/local/bin/ecommon.sh",
+    "edirect.py": "/usr/local/bin/edirect.py",
+    "efetch": "/usr/local/bin/efetch",
+    "efilter": "/usr/local/bin/efilter",
+    "einfo": "/usr/local/bin/einfo",
+    "elink": "/usr/local/bin/elink",
+    "enc2xs": "/usr/local/bin/enc2xs",
+    "encguess": "/usr/local/bin/encguess",
+    "envsubst": "/usr/local/bin/envsubst",
+    "epost": "/usr/local/bin/epost",
+    "esample": "/usr/local/bin/esample",
+    "esearch": "/usr/local/bin/esearch",
+    "esl-afetch": "/usr/local/bin/esl-afetch",
+    "esl-alimanip": "/usr/local/bin/esl-alimanip",
+    "esl-alimap": "/usr/local/bin/esl-alimap",
+    "esl-alimask": "/usr/local/bin/esl-alimask",
+    "esl-alimerge": "/usr/local/bin/esl-alimerge",
+    "esl-alipid": "/usr/local/bin/esl-alipid",
+    "esl-alirev": "/usr/local/bin/esl-alirev",
+    "esl-alistat": "/usr/local/bin/esl-alistat",
+    "esl-compalign": "/usr/local/bin/esl-compalign",
+    "esl-compstruct": "/usr/local/bin/esl-compstruct",
+    "esl-construct": "/usr/local/bin/esl-construct",
+    "esl-histplot": "/usr/local/bin/esl-histplot",
+    "esl-mask": "/usr/local/bin/esl-mask",
+    "esl-mixdchlet": "/usr/local/bin/esl-mixdchlet",
+    "esl-reformat": "/usr/local/bin/esl-reformat",
+    "esl-selectn": "/usr/local/bin/esl-selectn",
+    "esl-seqrange": "/usr/local/bin/esl-seqrange",
+    "esl-seqstat": "/usr/local/bin/esl-seqstat",
+    "esl-sfetch": "/usr/local/bin/esl-sfetch",
+    "esl-shuffle": "/usr/local/bin/esl-shuffle",
+    "esl-ssdraw": "/usr/local/bin/esl-ssdraw",
+    "esl-translate": "/usr/local/bin/esl-translate",
+    "esl-weight": "/usr/local/bin/esl-weight",
+    "esummary": "/usr/local/bin/esummary",
+    "exclude-uid-lists": "/usr/local/bin/exclude-uid-lists",
+    "expand-current": "/usr/local/bin/expand-current",
+    "f2py": "/usr/local/bin/f2py",
+    "fetch-pubmed": "/usr/local/bin/fetch-pubmed",
+    "filter-columns": "/usr/local/bin/filter-columns",
+    "filter-stop-words": "/usr/local/bin/filter-stop-words",
+    "find-in-gene": "/usr/local/bin/find-in-gene",
+    "fonttools": "/usr/local/bin/fonttools",
+    "freetype-config": "/usr/local/bin/freetype-config",
+    "fuse-ranges": "/usr/local/bin/fuse-ranges",
+    "fuse-segments": "/usr/local/bin/fuse-segments",
+    "gbf2xml": "/usr/local/bin/gbf2xml",
+    "genbrk": "/usr/local/bin/genbrk",
+    "gencfu": "/usr/local/bin/gencfu",
+    "gencnval": "/usr/local/bin/gencnval",
+    "gendict": "/usr/local/bin/gendict",
+    "gene2range": "/usr/local/bin/gene2range",
+    "gene_info_reader": "/usr/local/bin/gene_info_reader",
+    "genrb": "/usr/local/bin/genrb",
+    "getRepeatMaskerBatch.pl": "/usr/local/bin/getRepeatMaskerBatch.pl",
+    "get_species_taxids.sh": "/usr/local/bin/get_species_taxids.sh",
+    "get_species_taxids.sh.bak": "/usr/local/bin/get_species_taxids.sh.bak",
+    "gettext": "/usr/local/bin/gettext",
+    "gettext.sh": "/usr/local/bin/gettext.sh",
+    "gettextize": "/usr/local/bin/gettextize",
+    "gif2h5": "/usr/local/bin/gif2h5",
+    "gss-client": "/usr/local/bin/gss-client",
+    "h2ph": "/usr/local/bin/h2ph",
+    "h2xs": "/usr/local/bin/h2xs",
+    "h52gif": "/usr/local/bin/h52gif",
+    "h5c++": "/usr/local/bin/h5c++",
+    "h5cc": "/usr/local/bin/h5cc",
+    "h5clear": "/usr/local/bin/h5clear",
+    "h5copy": "/usr/local/bin/h5copy",
+    "h5debug": "/usr/local/bin/h5debug",
+    "h5delete": "/usr/local/bin/h5delete",
+    "h5diff": "/usr/local/bin/h5diff",
+    "h5dump": "/usr/local/bin/h5dump",
+    "h5fc": "/usr/local/bin/h5fc",
+    "h5format_convert": "/usr/local/bin/h5format_convert",
+    "h5fuse.sh": "/usr/local/bin/h5fuse.sh",
+    "h5import": "/usr/local/bin/h5import",
+    "h5jam": "/usr/local/bin/h5jam",
+    "h5ls": "/usr/local/bin/h5ls",
+    "h5mkgrp": "/usr/local/bin/h5mkgrp",
+    "h5perf_serial": "/usr/local/bin/h5perf_serial",
+    "h5redeploy": "/usr/local/bin/h5redeploy",
+    "h5repack": "/usr/local/bin/h5repack",
+    "h5repart": "/usr/local/bin/h5repart",
+    "h5stat": "/usr/local/bin/h5stat",
+    "h5tools_test_utils": "/usr/local/bin/h5tools_test_utils",
+    "h5unjam": "/usr/local/bin/h5unjam",
+    "h5watch": "/usr/local/bin/h5watch",
+    "hgvs2spdi": "/usr/local/bin/hgvs2spdi",
+    "hmmalign": "/usr/local/bin/hmmalign",
+    "hmmbuild": "/usr/local/bin/hmmbuild",
+    "hmmconvert": "/usr/local/bin/hmmconvert",
+    "hmmemit": "/usr/local/bin/hmmemit",
+    "hmmfetch": "/usr/local/bin/hmmfetch",
+    "hmmlogo": "/usr/local/bin/hmmlogo",
+    "hmmpgmd": "/usr/local/bin/hmmpgmd",
+    "hmmpgmd_shard": "/usr/local/bin/hmmpgmd_shard",
+    "hmmpress": "/usr/local/bin/hmmpress",
+    "hmmscan": "/usr/local/bin/hmmscan",
+    "hmmsearch": "/usr/local/bin/hmmsearch",
+    "hmmsim": "/usr/local/bin/hmmsim",
+    "hmmstat": "/usr/local/bin/hmmstat",
+    "icu-config": "/usr/local/bin/icu-config",
+    "icuexportdata": "/usr/local/bin/icuexportdata",
+    "icuinfo": "/usr/local/bin/icuinfo",
+    "idle3": "/usr/local/bin/idle3",
+    "idle3.12": "/usr/local/bin/idle3.12",
+    "idn2": "/usr/local/bin/idn2",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "instmodsh": "/usr/local/bin/instmodsh",
+    "intersect-uid-lists": "/usr/local/bin/intersect-uid-lists",
+    "irf": "/usr/local/bin/irf",
+    "jackhmmer": "/usr/local/bin/jackhmmer",
+    "join-into-groups-of": "/usr/local/bin/join-into-groups-of",
+    "jpegtran": "/usr/local/bin/jpegtran",
+    "jpgicc": "/usr/local/bin/jpgicc",
+    "json2xml": "/usr/local/bin/json2xml",
+    "json_pp": "/usr/local/bin/json_pp",
+    "json_xs": "/usr/local/bin/json_xs",
+    "k5srvutil": "/usr/local/bin/k5srvutil",
+    "k8": "/usr/local/bin/k8",
+    "kadmin": "/usr/local/bin/kadmin",
+    "kdestroy": "/usr/local/bin/kdestroy",
+    "keyctl": "/usr/local/bin/keyctl",
+    "kinit": "/usr/local/bin/kinit",
+    "klist": "/usr/local/bin/klist",
+    "kpasswd": "/usr/local/bin/kpasswd",
+    "krb5-config": "/usr/local/bin/krb5-config",
+    "ksu": "/usr/local/bin/ksu",
+    "kswitch": "/usr/local/bin/kswitch",
+    "ktutil": "/usr/local/bin/ktutil",
+    "kvno": "/usr/local/bin/kvno",
+    "legacy_blast.pl": "/usr/local/bin/legacy_blast.pl",
+    "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
+    "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
+    "libnetcfg": "/usr/local/bin/libnetcfg",
+    "libpng-config": "/usr/local/bin/libpng-config",
+    "libpng16-config": "/usr/local/bin/libpng16-config",
+    "linkicc": "/usr/local/bin/linkicc",
+    "lzcat": "/usr/local/bin/lzcat",
+    "lzcmp": "/usr/local/bin/lzcmp",
+    "lzdiff": "/usr/local/bin/lzdiff",
+    "lzegrep": "/usr/local/bin/lzegrep",
+    "lzfgrep": "/usr/local/bin/lzfgrep",
+    "lzgrep": "/usr/local/bin/lzgrep",
+    "lzless": "/usr/local/bin/lzless",
+    "lzma": "/usr/local/bin/lzma",
+    "lzmadec": "/usr/local/bin/lzmadec",
+    "lzmainfo": "/usr/local/bin/lzmainfo",
+    "lzmore": "/usr/local/bin/lzmore",
+    "make_multi_seq.pl": "/usr/local/bin/make_multi_seq.pl",
+    "makeblastdb": "/usr/local/bin/makeblastdb",
+    "makeclusterdb": "/usr/local/bin/makeclusterdb",
+    "makeconv": "/usr/local/bin/makeconv",
+    "makehmmerdb": "/usr/local/bin/makehmmerdb",
+    "makembindex": "/usr/local/bin/makembindex",
+    "makeprofiledb": "/usr/local/bin/makeprofiledb",
+    "maskFile.pl": "/usr/local/bin/maskFile.pl",
+    "minimap2": "/usr/local/bin/minimap2",
+    "msgattrib": "/usr/local/bin/msgattrib",
+    "msgcat": "/usr/local/bin/msgcat",
+    "msgcmp": "/usr/local/bin/msgcmp",
+    "msgcomm": "/usr/local/bin/msgcomm",
+    "msgconv": "/usr/local/bin/msgconv",
+    "msgen": "/usr/local/bin/msgen",
+    "msgexec": "/usr/local/bin/msgexec",
+    "msgfilter": "/usr/local/bin/msgfilter",
+    "msgfmt": "/usr/local/bin/msgfmt",
+    "msggrep": "/usr/local/bin/msggrep",
+    "msginit": "/usr/local/bin/msginit",
+    "msgmerge": "/usr/local/bin/msgmerge",
+    "msgunfmt": "/usr/local/bin/msgunfmt",
+    "msguniq": "/usr/local/bin/msguniq",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "ngettext": "/usr/local/bin/ngettext",
+    "nghttp": "/usr/local/bin/nghttp",
+    "nghttpd": "/usr/local/bin/nghttpd",
+    "nghttpx": "/usr/local/bin/nghttpx",
+    "nhmmer": "/usr/local/bin/nhmmer",
+    "nhmmscan": "/usr/local/bin/nhmmscan",
+    "node": "/usr/local/bin/node",
+    "npm": "/usr/local/bin/npm",
+    "npx": "/usr/local/bin/npx",
+    "nquire": "/usr/local/bin/nquire",
+    "openssl": "/usr/local/bin/openssl",
+    "opj_compress": "/usr/local/bin/opj_compress",
+    "opj_decompress": "/usr/local/bin/opj_decompress",
+    "opj_dump": "/usr/local/bin/opj_dump",
+    "paftools.js": "/usr/local/bin/paftools.js",
+    "pcre-config": "/usr/local/bin/pcre-config",
+    "pcregrep": "/usr/local/bin/pcregrep",
+    "pcretest": "/usr/local/bin/pcretest",
+    "perl": "/usr/local/bin/perl",
+    "perl5.32.1": "/usr/local/bin/perl5.32.1",
+    "perlbug": "/usr/local/bin/perlbug",
+    "perldoc": "/usr/local/bin/perldoc",
+    "perlivp": "/usr/local/bin/perlivp",
+    "perlthanks": "/usr/local/bin/perlthanks",
+    "phmmer": "/usr/local/bin/phmmer",
+    "phrase-search": "/usr/local/bin/phrase-search",
+    "piconv": "/usr/local/bin/piconv",
+    "pip": "/usr/local/bin/pip",
+    "pip3": "/usr/local/bin/pip3",
+    "pkgdata": "/usr/local/bin/pkgdata",
+    "pl2pm": "/usr/local/bin/pl2pm",
+    "plot_2d.pl": "/usr/local/bin/plot_2d.pl",
+    "plot_len1.pl": "/usr/local/bin/plot_len1.pl",
+    "png-fix-itxt": "/usr/local/bin/png-fix-itxt",
+    "pngfix": "/usr/local/bin/pngfix",
+    "pod2html": "/usr/local/bin/pod2html",
+    "pod2man": "/usr/local/bin/pod2man",
+    "pod2text": "/usr/local/bin/pod2text",
+    "pod2usage": "/usr/local/bin/pod2usage",
+    "podchecker": "/usr/local/bin/podchecker",
+    "print-columns": "/usr/local/bin/print-columns",
+    "project_tree_builder": "/usr/local/bin/project_tree_builder",
+    "prove": "/usr/local/bin/prove",
+    "psiblast": "/usr/local/bin/psiblast",
+    "psicc": "/usr/local/bin/psicc",
+    "ptar": "/usr/local/bin/ptar",
+    "ptardiff": "/usr/local/bin/ptardiff",
+    "ptargrep": "/usr/local/bin/ptargrep",
+    "pydoc": "/usr/local/bin/pydoc",
+    "pydoc3": "/usr/local/bin/pydoc3",
+    "pydoc3.12": "/usr/local/bin/pydoc3.12",
+    "pyftmerge": "/usr/local/bin/pyftmerge",
+    "pyftsubset": "/usr/local/bin/pyftsubset",
+    "python": "/usr/local/bin/python",
+    "python3": "/usr/local/bin/python3",
+    "python3-config": "/usr/local/bin/python3-config",
+    "python3.1": "/usr/local/bin/python3.1",
+    "python3.12": "/usr/local/bin/python3.12",
+    "python3.12-config": "/usr/local/bin/python3.12-config",
+    "rchive": "/usr/local/bin/rchive",
+    "rchive.Linux": "/usr/local/bin/rchive.Linux",
+    "rdjpgcom": "/usr/local/bin/rdjpgcom",
+    "recode-sr-latin": "/usr/local/bin/recode-sr-latin",
+    "reorder-columns": "/usr/local/bin/reorder-columns",
+    "reset": "/usr/local/bin/reset",
+    "rmOut2Fasta.pl": "/usr/local/bin/rmOut2Fasta.pl",
+    "rmOutToGFF3.pl": "/usr/local/bin/rmOutToGFF3.pl",
+    "rmToUCSCTables.pl": "/usr/local/bin/rmToUCSCTables.pl",
+    "rmblastn": "/usr/local/bin/rmblastn",
+    "rpsblast": "/usr/local/bin/rpsblast",
+    "rpstblastn": "/usr/local/bin/rpstblastn",
+    "run-ncbi-converter": "/usr/local/bin/run-ncbi-converter",
+    "run_with_lock": "/usr/local/bin/run_with_lock",
+    "sclient": "/usr/local/bin/sclient",
+    "sdust": "/usr/local/bin/sdust",
+    "seedtop": "/usr/local/bin/seedtop",
+    "segmasker": "/usr/local/bin/segmasker",
+    "seqdb_demo": "/usr/local/bin/seqdb_demo",
+    "seqdb_perf": "/usr/local/bin/seqdb_perf",
+    "seqtk": "/usr/local/bin/seqtk",
+    "shasum": "/usr/local/bin/shasum",
+    "sim_client": "/usr/local/bin/sim_client",
+    "skip-if-file-exists": "/usr/local/bin/skip-if-file-exists",
+    "snp2hgvs": "/usr/local/bin/snp2hgvs",
+    "snp2tbl": "/usr/local/bin/snp2tbl",
+    "sort-table": "/usr/local/bin/sort-table",
+    "sort-uniq-count": "/usr/local/bin/sort-uniq-count",
+    "sort-uniq-count-rank": "/usr/local/bin/sort-uniq-count-rank",
+    "spdi2tbl": "/usr/local/bin/spdi2tbl",
+    "splain": "/usr/local/bin/splain",
+    "split-at-intron": "/usr/local/bin/split-at-intron",
+    "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
+    "stream-pubmed": "/usr/local/bin/stream-pubmed",
+    "streamzip": "/usr/local/bin/streamzip",
+    "tabs": "/usr/local/bin/tabs",
+    "tbl2prod": "/usr/local/bin/tbl2prod",
+    "tbl2xml": "/usr/local/bin/tbl2xml",
+    "tblastn": "/usr/local/bin/tblastn",
+    "tblastx": "/usr/local/bin/tblastx",
+    "tclsh": "/usr/local/bin/tclsh",
+    "tclsh8.6": "/usr/local/bin/tclsh8.6",
+    "test-edirect": "/usr/local/bin/test-edirect",
+    "test-eutils": "/usr/local/bin/test-eutils",
+    "test-pubmed-index": "/usr/local/bin/test-pubmed-index",
+    "test_pcre": "/usr/local/bin/test_pcre",
+    "theme-aliases": "/usr/local/bin/theme-aliases",
+    "tic": "/usr/local/bin/tic",
+    "tiffcp": "/usr/local/bin/tiffcp",
+    "tiffdump": "/usr/local/bin/tiffdump",
+    "tiffinfo": "/usr/local/bin/tiffinfo",
+    "tiffset": "/usr/local/bin/tiffset",
+    "tiffsplit": "/usr/local/bin/tiffsplit",
+    "tificc": "/usr/local/bin/tificc",
+    "tjbench": "/usr/local/bin/tjbench",
+    "toe": "/usr/local/bin/toe",
+    "tput": "/usr/local/bin/tput",
+    "transicc": "/usr/local/bin/transicc",
+    "transmute": "/usr/local/bin/transmute",
+    "transmute.Linux": "/usr/local/bin/transmute.Linux",
+    "trf": "/usr/local/bin/trf",
+    "trfMask": "/usr/local/bin/trfMask",
+    "tset": "/usr/local/bin/tset",
+    "ttx": "/usr/local/bin/ttx",
+    "uniq-table": "/usr/local/bin/uniq-table",
+    "unlzma": "/usr/local/bin/unlzma",
+    "unxz": "/usr/local/bin/unxz",
+    "unzstd": "/usr/local/bin/unzstd",
+    "update_blastdb.pl": "/usr/local/bin/update_blastdb.pl",
+    "update_blastdb.pl.bak": "/usr/local/bin/update_blastdb.pl.bak",
+    "uuclient": "/usr/local/bin/uuclient",
+    "wget": "/usr/local/bin/wget",
+    "wheel": "/usr/local/bin/wheel",
+    "windowmasker": "/usr/local/bin/windowmasker",
+    "windowmasker_2.2.22_adapter.py": "/usr/local/bin/windowmasker_2.2.22_adapter.py",
+    "wish": "/usr/local/bin/wish",
+    "wish8.6": "/usr/local/bin/wish8.6",
+    "word-at-a-time": "/usr/local/bin/word-at-a-time",
+    "wrjpgcom": "/usr/local/bin/wrjpgcom",
+    "wublastToCrossmatch.pl": "/usr/local/bin/wublastToCrossmatch.pl",
+    "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld",
+    "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld",
+    "xgettext": "/usr/local/bin/xgettext",
+    "xml2fsa": "/usr/local/bin/xml2fsa",
+    "xml2json": "/usr/local/bin/xml2json",
+    "xml2tbl": "/usr/local/bin/xml2tbl",
+    "xsubpp": "/usr/local/bin/xsubpp",
+    "xtract": "/usr/local/bin/xtract",
+    "xtract.Linux": "/usr/local/bin/xtract.Linux",
+    "xz": "/usr/local/bin/xz",
+    "xzcat": "/usr/local/bin/xzcat",
+    "xzcmp": "/usr/local/bin/xzcmp",
+    "xzdec": "/usr/local/bin/xzdec",
+    "xzdiff": "/usr/local/bin/xzdiff",
+    "xzegrep": "/usr/local/bin/xzegrep",
+    "xzfgrep": "/usr/local/bin/xzfgrep",
+    "xzgrep": "/usr/local/bin/xzgrep",
+    "xzless": "/usr/local/bin/xzless",
+    "xzmore": "/usr/local/bin/xzmore",
+    "zipdetails": "/usr/local/bin/zipdetails",
+    "zstd": "/usr/local/bin/zstd",
+    "zstdcat": "/usr/local/bin/zstdcat",
+    "zstdgrep": "/usr/local/bin/zstdgrep",
+    "zstdless": "/usr/local/bin/zstdless",
+    "zstdmt": "/usr/local/bin/zstdmt",
+    "env-execute": "/usr/local/env-execute"
+}
\ No newline at end of file
diff --git a/quay.io/biocontainers/c/cellbender:0.3.0--pyhdfd78af_0.json b/quay.io/biocontainers/c/cellbender:0.3.0--pyhdfd78af_0.json
new file mode 100644
index 0000000..7315e5b
--- /dev/null
+++ b/quay.io/biocontainers/c/cellbender:0.3.0--pyhdfd78af_0.json
@@ -0,0 +1,246 @@
+{
+    "2to3": "/usr/local/bin/2to3",
+    "2to3-3.7": "/usr/local/bin/2to3-3.7",
+    "adig": "/usr/local/bin/adig",
+    "ahost": "/usr/local/bin/ahost",
+    "brotli": "/usr/local/bin/brotli",
+    "bunzip2": "/usr/local/bin/bunzip2",
+    "bzcat": "/usr/local/bin/bzcat",
+    "bzcmp": "/usr/local/bin/bzcmp",
+    "bzdiff": "/usr/local/bin/bzdiff",
+    "bzegrep": "/usr/local/bin/bzegrep",
+    "bzfgrep": "/usr/local/bin/bzfgrep",
+    "bzgrep": "/usr/local/bin/bzgrep",
+    "bzip2": "/usr/local/bin/bzip2",
+    "bzip2recover": "/usr/local/bin/bzip2recover",
+    "bzless": "/usr/local/bin/bzless",
+    "bzmore": "/usr/local/bin/bzmore",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "cellbender": "/usr/local/bin/cellbender",
+    "cjpeg": "/usr/local/bin/cjpeg",
+    "clear": "/usr/local/bin/clear",
+    "compile_et": "/usr/local/bin/compile_et",
+    "convert-caffe2-to-onnx": "/usr/local/bin/convert-caffe2-to-onnx",
+    "convert-onnx-to-caffe2": "/usr/local/bin/convert-onnx-to-caffe2",
+    "curl-config": "/usr/local/bin/curl-config",
+    "curve_keygen": "/usr/local/bin/curve_keygen",
+    "derb": "/usr/local/bin/derb",
+    "djpeg": "/usr/local/bin/djpeg",
+    "f2py": "/usr/local/bin/f2py",
+    "f2py3": "/usr/local/bin/f2py3",
+    "f2py3.7": "/usr/local/bin/f2py3.7",
+    "fax2ps": "/usr/local/bin/fax2ps",
+    "fax2tiff": "/usr/local/bin/fax2tiff",
+    "fonttools": "/usr/local/bin/fonttools",
+    "freetype-config": "/usr/local/bin/freetype-config",
+    "genbrk": "/usr/local/bin/genbrk",
+    "gencfu": "/usr/local/bin/gencfu",
+    "gencnval": "/usr/local/bin/gencnval",
+    "gendict": "/usr/local/bin/gendict",
+    "genrb": "/usr/local/bin/genrb",
+    "gif2h5": "/usr/local/bin/gif2h5",
+    "gss-client": "/usr/local/bin/gss-client",
+    "h52gif": "/usr/local/bin/h52gif",
+    "h5c++": "/usr/local/bin/h5c++",
+    "h5cc": "/usr/local/bin/h5cc",
+    "h5clear": "/usr/local/bin/h5clear",
+    "h5copy": "/usr/local/bin/h5copy",
+    "h5debug": "/usr/local/bin/h5debug",
+    "h5diff": "/usr/local/bin/h5diff",
+    "h5dump": "/usr/local/bin/h5dump",
+    "h5fc": "/usr/local/bin/h5fc",
+    "h5format_convert": "/usr/local/bin/h5format_convert",
+    "h5import": "/usr/local/bin/h5import",
+    "h5jam": "/usr/local/bin/h5jam",
+    "h5ls": "/usr/local/bin/h5ls",
+    "h5mkgrp": "/usr/local/bin/h5mkgrp",
+    "h5perf_serial": "/usr/local/bin/h5perf_serial",
+    "h5redeploy": "/usr/local/bin/h5redeploy",
+    "h5repack": "/usr/local/bin/h5repack",
+    "h5repart": "/usr/local/bin/h5repart",
+    "h5stat": "/usr/local/bin/h5stat",
+    "h5unjam": "/usr/local/bin/h5unjam",
+    "h5watch": "/usr/local/bin/h5watch",
+    "icu-config": "/usr/local/bin/icu-config",
+    "icuexportdata": "/usr/local/bin/icuexportdata",
+    "icuinfo": "/usr/local/bin/icuinfo",
+    "idle3": "/usr/local/bin/idle3",
+    "idle3.7": "/usr/local/bin/idle3.7",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "iptest": "/usr/local/bin/iptest",
+    "iptest3": "/usr/local/bin/iptest3",
+    "ipython": "/usr/local/bin/ipython",
+    "ipython3": "/usr/local/bin/ipython3",
+    "jpegtran": "/usr/local/bin/jpegtran",
+    "jpgicc": "/usr/local/bin/jpgicc",
+    "jsonschema": "/usr/local/bin/jsonschema",
+    "jupyter": "/usr/local/bin/jupyter",
+    "jupyter-bundlerextension": "/usr/local/bin/jupyter-bundlerextension",
+    "jupyter-console": "/usr/local/bin/jupyter-console",
+    "jupyter-contrib": "/usr/local/bin/jupyter-contrib",
+    "jupyter-contrib-nbextension": "/usr/local/bin/jupyter-contrib-nbextension",
+    "jupyter-dejavu": "/usr/local/bin/jupyter-dejavu",
+    "jupyter-execute": "/usr/local/bin/jupyter-execute",
+    "jupyter-kernel": "/usr/local/bin/jupyter-kernel",
+    "jupyter-kernelspec": "/usr/local/bin/jupyter-kernelspec",
+    "jupyter-migrate": "/usr/local/bin/jupyter-migrate",
+    "jupyter-nbclassic": "/usr/local/bin/jupyter-nbclassic",
+    "jupyter-nbclassic-bundlerextension": "/usr/local/bin/jupyter-nbclassic-bundlerextension",
+    "jupyter-nbclassic-extension": "/usr/local/bin/jupyter-nbclassic-extension",
+    "jupyter-nbclassic-serverextension": "/usr/local/bin/jupyter-nbclassic-serverextension",
+    "jupyter-nbconvert": "/usr/local/bin/jupyter-nbconvert",
+    "jupyter-nbextension": "/usr/local/bin/jupyter-nbextension",
+    "jupyter-nbextensions_configurator": "/usr/local/bin/jupyter-nbextensions_configurator",
+    "jupyter-notebook": "/usr/local/bin/jupyter-notebook",
+    "jupyter-qtconsole": "/usr/local/bin/jupyter-qtconsole",
+    "jupyter-run": "/usr/local/bin/jupyter-run",
+    "jupyter-server": "/usr/local/bin/jupyter-server",
+    "jupyter-serverextension": "/usr/local/bin/jupyter-serverextension",
+    "jupyter-troubleshoot": "/usr/local/bin/jupyter-troubleshoot",
+    "jupyter-trust": "/usr/local/bin/jupyter-trust",
+    "k5srvutil": "/usr/local/bin/k5srvutil",
+    "kadmin": "/usr/local/bin/kadmin",
+    "kdestroy": "/usr/local/bin/kdestroy",
+    "keyctl": "/usr/local/bin/keyctl",
+    "kinit": "/usr/local/bin/kinit",
+    "klist": "/usr/local/bin/klist",
+    "kpasswd": "/usr/local/bin/kpasswd",
+    "krb5-config": "/usr/local/bin/krb5-config",
+    "ksu": "/usr/local/bin/ksu",
+    "kswitch": "/usr/local/bin/kswitch",
+    "ktutil": "/usr/local/bin/ktutil",
+    "kvno": "/usr/local/bin/kvno",
+    "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
+    "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
+    "libpng-config": "/usr/local/bin/libpng-config",
+    "libpng16-config": "/usr/local/bin/libpng16-config",
+    "linkicc": "/usr/local/bin/linkicc",
+    "loompy": "/usr/local/bin/loompy",
+    "lz4": "/usr/local/bin/lz4",
+    "lz4c": "/usr/local/bin/lz4c",
+    "lz4cat": "/usr/local/bin/lz4cat",
+    "lzcat": "/usr/local/bin/lzcat",
+    "lzcmp": "/usr/local/bin/lzcmp",
+    "lzdiff": "/usr/local/bin/lzdiff",
+    "lzegrep": "/usr/local/bin/lzegrep",
+    "lzfgrep": "/usr/local/bin/lzfgrep",
+    "lzgrep": "/usr/local/bin/lzgrep",
+    "lzless": "/usr/local/bin/lzless",
+    "lzma": "/usr/local/bin/lzma",
+    "lzmadec": "/usr/local/bin/lzmadec",
+    "lzmainfo": "/usr/local/bin/lzmainfo",
+    "lzmore": "/usr/local/bin/lzmore",
+    "makeconv": "/usr/local/bin/makeconv",
+    "matplotlib": "/usr/local/bin/matplotlib",
+    "natsort": "/usr/local/bin/natsort",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "nghttp": "/usr/local/bin/nghttp",
+    "nghttpd": "/usr/local/bin/nghttpd",
+    "nghttpx": "/usr/local/bin/nghttpx",
+    "ninja": "/usr/local/bin/ninja",
+    "numba": "/usr/local/bin/numba",
+    "openssl": "/usr/local/bin/openssl",
+    "opj_compress": "/usr/local/bin/opj_compress",
+    "opj_decompress": "/usr/local/bin/opj_decompress",
+    "opj_dump": "/usr/local/bin/opj_dump",
+    "pal2rgb": "/usr/local/bin/pal2rgb",
+    "pandoc": "/usr/local/bin/pandoc",
+    "pip": "/usr/local/bin/pip",
+    "pip3": "/usr/local/bin/pip3",
+    "pkgdata": "/usr/local/bin/pkgdata",
+    "png-fix-itxt": "/usr/local/bin/png-fix-itxt",
+    "pngfix": "/usr/local/bin/pngfix",
+    "ppm2tiff": "/usr/local/bin/ppm2tiff",
+    "protoc": "/usr/local/bin/protoc",
+    "psicc": "/usr/local/bin/psicc",
+    "pt2to3": "/usr/local/bin/pt2to3",
+    "ptdump": "/usr/local/bin/ptdump",
+    "ptrepack": "/usr/local/bin/ptrepack",
+    "pttree": "/usr/local/bin/pttree",
+    "pycc": "/usr/local/bin/pycc",
+    "pydoc": "/usr/local/bin/pydoc",
+    "pydoc3": "/usr/local/bin/pydoc3",
+    "pydoc3.7": "/usr/local/bin/pydoc3.7",
+    "pyftmerge": "/usr/local/bin/pyftmerge",
+    "pyftsubset": "/usr/local/bin/pyftsubset",
+    "pygmentize": "/usr/local/bin/pygmentize",
+    "python": "/usr/local/bin/python",
+    "python3": "/usr/local/bin/python3",
+    "python3-config": "/usr/local/bin/python3-config",
+    "python3.7": "/usr/local/bin/python3.7",
+    "python3.7-config": "/usr/local/bin/python3.7-config",
+    "python3.7m": "/usr/local/bin/python3.7m",
+    "python3.7m-config": "/usr/local/bin/python3.7m-config",
+    "pyvenv": "/usr/local/bin/pyvenv",
+    "pyvenv-3.7": "/usr/local/bin/pyvenv-3.7",
+    "qtpy": "/usr/local/bin/qtpy",
+    "raw2tiff": "/usr/local/bin/raw2tiff",
+    "rdjpgcom": "/usr/local/bin/rdjpgcom",
+    "reset": "/usr/local/bin/reset",
+    "sclient": "/usr/local/bin/sclient",
+    "send2trash": "/usr/local/bin/send2trash",
+    "sim_client": "/usr/local/bin/sim_client",
+    "sqlite3": "/usr/local/bin/sqlite3",
+    "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
+    "tabs": "/usr/local/bin/tabs",
+    "tclsh": "/usr/local/bin/tclsh",
+    "tclsh8.6": "/usr/local/bin/tclsh8.6",
+    "tic": "/usr/local/bin/tic",
+    "tiff2bw": "/usr/local/bin/tiff2bw",
+    "tiff2pdf": "/usr/local/bin/tiff2pdf",
+    "tiff2ps": "/usr/local/bin/tiff2ps",
+    "tiff2rgba": "/usr/local/bin/tiff2rgba",
+    "tiffcmp": "/usr/local/bin/tiffcmp",
+    "tiffcp": "/usr/local/bin/tiffcp",
+    "tiffcrop": "/usr/local/bin/tiffcrop",
+    "tiffdither": "/usr/local/bin/tiffdither",
+    "tiffdump": "/usr/local/bin/tiffdump",
+    "tiffinfo": "/usr/local/bin/tiffinfo",
+    "tiffmedian": "/usr/local/bin/tiffmedian",
+    "tiffset": "/usr/local/bin/tiffset",
+    "tiffsplit": "/usr/local/bin/tiffsplit",
+    "tificc": "/usr/local/bin/tificc",
+    "toe": "/usr/local/bin/toe",
+    "torchrun": "/usr/local/bin/torchrun",
+    "tput": "/usr/local/bin/tput",
+    "tqdm": "/usr/local/bin/tqdm",
+    "transicc": "/usr/local/bin/transicc",
+    "tset": "/usr/local/bin/tset",
+    "ttx": "/usr/local/bin/ttx",
+    "unlz4": "/usr/local/bin/unlz4",
+    "unlzma": "/usr/local/bin/unlzma",
+    "unxz": "/usr/local/bin/unxz",
+    "unzstd": "/usr/local/bin/unzstd",
+    "uuclient": "/usr/local/bin/uuclient",
+    "wheel": "/usr/local/bin/wheel",
+    "wish": "/usr/local/bin/wish",
+    "wish8.6": "/usr/local/bin/wish8.6",
+    "wrjpgcom": "/usr/local/bin/wrjpgcom",
+    "wsdump": "/usr/local/bin/wsdump",
+    "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld",
+    "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld",
+    "xml2-config": "/usr/local/bin/xml2-config",
+    "xmlcatalog": "/usr/local/bin/xmlcatalog",
+    "xmllint": "/usr/local/bin/xmllint",
+    "xslt-config": "/usr/local/bin/xslt-config",
+    "xsltproc": "/usr/local/bin/xsltproc",
+    "xz": "/usr/local/bin/xz",
+    "xzcat": "/usr/local/bin/xzcat",
+    "xzcmp": "/usr/local/bin/xzcmp",
+    "xzdec": "/usr/local/bin/xzdec",
+    "xzdiff": "/usr/local/bin/xzdiff",
+    "xzegrep": "/usr/local/bin/xzegrep",
+    "xzfgrep": "/usr/local/bin/xzfgrep",
+    "xzgrep": "/usr/local/bin/xzgrep",
+    "xzless": "/usr/local/bin/xzless",
+    "xzmore": "/usr/local/bin/xzmore",
+    "zstd": "/usr/local/bin/zstd",
+    "zstdcat": "/usr/local/bin/zstdcat",
+    "zstdgrep": "/usr/local/bin/zstdgrep",
+    "zstdless": "/usr/local/bin/zstdless",
+    "zstdmt": "/usr/local/bin/zstdmt",
+    "env-execute": "/usr/local/env-execute"
+}
\ No newline at end of file