diff --git a/counts.json b/counts.json
index 4ff8dcb..4724938 100644
--- a/counts.json
+++ b/counts.json
@@ -2326,8 +2326,8 @@
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@@ -5975,7 +5975,7 @@
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@@ -7308,7 +7308,7 @@
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@@ -7362,16 +7362,16 @@
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@@ -13913,11 +13913,11 @@
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@@ -14406,9 +14406,9 @@
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@@ -14967,8 +14967,8 @@
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@@ -19087,11 +19087,11 @@
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@@ -19705,10 +19706,10 @@
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-    "pkgdata": 5900,
+    "pkgdata": 5902,
     "pkginfo": 10,
     "pkill": 1,
     "pktogf": 1,
@@ -20068,9 +20069,9 @@
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     "pn2pdf": 1,
     "pneumo-typer": 1,
-    "png-fix-itxt": 5944,
+    "png-fix-itxt": 5946,
     "pngcp": 89,
-    "pngfix": 5944,
+    "pngfix": 5946,
     "pngtogd": 242,
     "pngtogd2": 242,
     "pnps-gen": 1,
@@ -20190,7 +20191,7 @@
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     "pplacer": 22,
     "ppltotf": 1,
-    "ppm2tiff": 5300,
+    "ppm2tiff": 5302,
     "pprodigal": 1,
     "pprof": 2,
     "pprof-symbolize": 1,
@@ -20617,7 +20618,7 @@
     "psiblast": 347,
     "psiblast_iteration_unit_test": 5,
     "psiblast_unit_test": 5,
-    "psicc": 1035,
+    "psicc": 1037,
     "psiclass": 1,
     "psiphi": 26,
     "psirc": 1,
@@ -20857,9 +20858,9 @@
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     "pydicom": 1,
     "pydna_repeatfinder": 1,
-    "pydoc": 3775,
-    "pydoc3": 3444,
-    "pydoc3.10": 826,
+    "pydoc": 3777,
+    "pydoc3": 3445,
+    "pydoc3.10": 827,
     "pydoc3.11": 278,
     "pydoc3.12": 270,
     "pydoc3.4": 6,
@@ -20988,22 +20989,22 @@
     "pytest": 151,
     "pytest-benchmark": 1,
     "pythia8-config": 1,
-    "python": 3776,
+    "python": 3778,
     "python-argcomplete-check-easy-install-script": 346,
     "python-argcomplete-tcsh": 191,
     "python-build": 2,
-    "python-config": 332,
-    "python2": 331,
-    "python2-config": 314,
+    "python-config": 333,
+    "python2": 332,
+    "python2-config": 315,
     "python2.5": 1,
     "python2.5-config": 1,
-    "python2.7": 331,
-    "python2.7-config": 314,
-    "python3": 3445,
-    "python3-config": 3444,
-    "python3.1": 1374,
-    "python3.10": 826,
-    "python3.10-config": 826,
+    "python2.7": 332,
+    "python2.7-config": 315,
+    "python3": 3446,
+    "python3-config": 3445,
+    "python3.1": 1375,
+    "python3.10": 827,
+    "python3.10-config": 827,
     "python3.11": 278,
     "python3.11-config": 278,
     "python3.12": 270,
@@ -21350,7 +21351,7 @@
     "ratt": 2,
     "rav1e": 10,
     "raven": 4,
-    "raw2tiff": 5300,
+    "raw2tiff": 5302,
     "raw_n50": 10,
     "raw_n50.o": 10,
     "raw_vcf_parse.py": 1,
@@ -21418,7 +21419,7 @@
     "rdfgraphisomorphism": 34,
     "rdfpipe": 34,
     "rdfs2dot": 34,
-    "rdjpgcom": 5824,
+    "rdjpgcom": 5826,
     "rdkit2fps": 1,
     "rdma_client": 24,
     "rdma_server": 24,
@@ -21557,6 +21558,7 @@
     "reduce_sr": 1,
     "reducesilva.sh": 31,
     "redundans.py": 1,
+    "redux": 1,
     "ref-eval": 1,
     "ref-eval-estimate-true-assembly": 1,
     "ref-variation": 3,
@@ -21880,7 +21882,7 @@
     "rescue_fusion.py": 1,
     "reseq": 1,
     "reseq-prepare-names.py": 1,
-    "reset": 7831,
+    "reset": 7835,
     "resetFragLibrary": 2,
     "reset_array.pl": 1,
     "reset_experiment.pl": 1,
@@ -22028,7 +22030,7 @@
     "rmdir": 85,
     "rmic": 422,
     "rmid": 422,
-    "rmiregistry": 550,
+    "rmiregistry": 552,
     "rmkdepend": 1,
     "rmlst-api": 1,
     "rmsk2bed": 15,
@@ -22235,6 +22237,7 @@
     "rubikrotation": 1,
     "ruby": 30,
     "rucs": 1,
+    "rukki": 1,
     "rumakeindex": 1,
     "run-HLA": 1,
     "run-adpred": 1,
@@ -22631,7 +22634,7 @@
     "sam_to_gff3.py": 1,
     "sam_to_map": 1,
     "samba.sh": 1,
-    "sambamba": 18,
+    "sambamba": 19,
     "samblaster": 4,
     "samcat": 2,
     "samclip": 20,
@@ -22861,7 +22864,7 @@
     "scitokens-test": 1,
     "scitokens-test-access": 1,
     "scitokens-verify": 1,
-    "sclient": 5879,
+    "sclient": 5881,
     "sclust_summary.sh": 1,
     "scluster": 3,
     "scmap-cli-post-install-tests.bats": 1,
@@ -23162,7 +23165,7 @@
     "seqxref": 26,
     "seqxrefget": 26,
     "seqyclean": 1,
-    "serialver": 550,
+    "serialver": 552,
     "seroba": 1,
     "serotypefinder": 1,
     "servertell": 26,
@@ -23386,7 +23389,7 @@
     "sim-cover2": 2,
     "sim-shotgun": 2,
     "sim4db": 3,
-    "sim_client": 5879,
+    "sim_client": 5881,
     "sim_reads": 10,
     "sim_reads.o": 10,
     "sim_reads_tran": 10,
@@ -23574,7 +23577,7 @@
     "smoothxg": 2,
     "smoove": 1,
     "smshrink": 1,
-    "smtpd.py": 332,
+    "smtpd.py": 333,
     "smtpd.pyc": 6,
     "smudgeplot.py": 2,
     "smudgeplot_plot.R": 2,
@@ -23972,8 +23975,8 @@
     "sql": 108,
     "sqlformat": 9,
     "sqlite.pl": 1,
-    "sqlite3": 2720,
-    "sqlite3_analyzer": 7225,
+    "sqlite3": 2721,
+    "sqlite3_analyzer": 7227,
     "sqlitebrowser": 1,
     "sqlmetal": 15,
     "sqlsharp": 15,
@@ -24603,7 +24606,7 @@
     "tableproxy64": 1,
     "tableschema": 1,
     "tablet": 1,
-    "tabs": 7831,
+    "tabs": 7835,
     "tabulate": 139,
     "tabulate.py": 1,
     "tabulator": 1,
@@ -24777,9 +24780,9 @@
     "tbvcfreport": 1,
     "tcdemux": 1,
     "tcfinder": 1,
-    "tclsh": 7462,
+    "tclsh": 7464,
     "tclsh8.5": 473,
-    "tclsh8.6": 7225,
+    "tclsh8.6": 7227,
     "tcode": 26,
     "tcsh": 3,
     "td_bignet": 2,
@@ -24982,7 +24985,7 @@
     "tiara-test": 2,
     "tiberius": 1,
     "tiberius.py": 1,
-    "tic": 7831,
+    "tic": 7835,
     "tiddit": 1,
     "tides": 1,
     "tidk": 1,
@@ -24990,23 +24993,23 @@
     "tidygff3": 1,
     "tidyp": 66,
     "tie": 1,
-    "tiff2bw": 5300,
+    "tiff2bw": 5302,
     "tiff2fsspec": 21,
-    "tiff2pdf": 5300,
-    "tiff2ps": 5300,
-    "tiff2rgba": 5300,
-    "tiffcmp": 5300,
+    "tiff2pdf": 5302,
+    "tiff2ps": 5302,
+    "tiff2rgba": 5302,
+    "tiffcmp": 5302,
     "tiffcomment": 23,
-    "tiffcp": 5571,
-    "tiffcrop": 5300,
-    "tiffdither": 5300,
-    "tiffdump": 5571,
+    "tiffcp": 5573,
+    "tiffcrop": 5302,
+    "tiffdither": 5302,
+    "tiffdump": 5573,
     "tifffile": 26,
-    "tiffinfo": 5571,
-    "tiffmedian": 5300,
-    "tiffset": 5571,
-    "tiffsplit": 5571,
-    "tificc": 1035,
+    "tiffinfo": 5573,
+    "tiffmedian": 5302,
+    "tiffset": 5573,
+    "tiffsplit": 5573,
+    "tificc": 1037,
     "tigStore": 3,
     "tiger-hash": 11,
     "tigge_check": 1,
@@ -25060,7 +25063,7 @@
     "titan-gc-prepare.py": 1,
     "titan.py": 1,
     "titration": 2,
-    "tjbench": 448,
+    "tjbench": 450,
     "tkconch": 1,
     "tkpp": 1,
     "tksm": 1,
@@ -25091,7 +25094,7 @@
     "to_upper_case.pl.bak": 1,
     "toco": 80,
     "toco_from_protos": 80,
-    "toe": 7831,
+    "toe": 7835,
     "tohnsw": 1,
     "toil": 3,
     "toil-cwl-runner": 3,
@@ -25143,7 +25146,7 @@
     "tpp_hostname": 2,
     "tpp_models.pl": 2,
     "tpptray.bat": 2,
-    "tput": 7831,
+    "tput": 7835,
     "tqdm": 381,
     "tr": 85,
     "tr-trimmer": 1,
@@ -25218,7 +25221,7 @@
     "transform_gfa.py": 1,
     "transformers-cli": 3,
     "transformseq": 13,
-    "transicc": 1035,
+    "transicc": 1037,
     "transit": 1,
     "transition_counter": 1,
     "transl": 1,
@@ -25374,7 +25377,7 @@
     "tryptic.py": 1,
     "ts": 3,
     "tsebra.py": 3,
-    "tset": 7831,
+    "tset": 7835,
     "tskit": 7,
     "tsort": 85,
     "tsp": 2,
@@ -25553,8 +25556,8 @@
     "unix2dos": 2,
     "unix2mac": 2,
     "unlink": 85,
-    "unlz4": 3535,
-    "unlzma": 7658,
+    "unlz4": 3536,
+    "unlzma": 7661,
     "unmapped2anchors.py": 1,
     "unmerge": 1,
     "unmerge-paired-reads.sh": 2,
@@ -25572,7 +25575,7 @@
     "unstarch-typical": 15,
     "untangle": 2,
     "unweight_fasta.py": 1,
-    "unxz": 7883,
+    "unxz": 7886,
     "unzip": 32,
     "unzip.sh": 30,
     "unziphdf5": 1,
@@ -25580,7 +25583,7 @@
     "unzipont": 1,
     "unzipont_dir": 1,
     "unzipsfx": 25,
-    "unzstd": 5298,
+    "unzstd": 5300,
     "update-blastdb.py": 2,
     "update-serotypefinder-db": 1,
     "update-sort-bed-migrate-candidates": 15,
@@ -25654,7 +25657,7 @@
     "utmpdump": 13,
     "utrgff2gbrowse.pl": 15,
     "utrrnaseq": 13,
-    "uuclient": 5879,
+    "uuclient": 5881,
     "uuid": 38,
     "uuid-config": 38,
     "uuidgen": 13,
@@ -26360,7 +26363,7 @@
     "wham": 1,
     "whamg": 1,
     "whatshap": 14,
-    "wheel": 3773,
+    "wheel": 3775,
     "wheezy.template": 2,
     "whereis": 13,
     "which": 1,
@@ -26405,9 +26408,9 @@
     "winnowmap": 3,
     "wiq.py": 1,
     "wisestork": 1,
-    "wish": 7462,
+    "wish": 7464,
     "wish8.5": 473,
-    "wish8.6": 7225,
+    "wish8.6": 7227,
     "wkhtmltoimage": 2,
     "wkhtmltopdf": 2,
     "wlmscpfs": 1,
@@ -26458,7 +26461,7 @@
     "write_tfrecord_species.py": 1,
     "writedb_entry": 1,
     "writedb_unit_test": 5,
-    "wrjpgcom": 5824,
+    "wrjpgcom": 5826,
     "ws": 2,
     "wsdl": 15,
     "wsdl2": 15,
@@ -26524,7 +26527,7 @@
     "x86_64-conda-linux-gnu-gfortran": 3356,
     "x86_64-conda-linux-gnu-gfortran.bin": 575,
     "x86_64-conda-linux-gnu-gprof": 3394,
-    "x86_64-conda-linux-gnu-ld": 5614,
+    "x86_64-conda-linux-gnu-ld": 5616,
     "x86_64-conda-linux-gnu-ld.bfd": 3394,
     "x86_64-conda-linux-gnu-ld.gold": 3394,
     "x86_64-conda-linux-gnu-nm": 3394,
@@ -26560,7 +26563,7 @@
     "x86_64-conda_cos6-linux-gnu-gfortran": 4125,
     "x86_64-conda_cos6-linux-gnu-gfortran.bin": 1344,
     "x86_64-conda_cos6-linux-gnu-gprof": 4161,
-    "x86_64-conda_cos6-linux-gnu-ld": 6448,
+    "x86_64-conda_cos6-linux-gnu-ld": 6450,
     "x86_64-conda_cos6-linux-gnu-ld.bfd": 4161,
     "x86_64-conda_cos6-linux-gnu-ld.gold": 4161,
     "x86_64-conda_cos6-linux-gnu-nm": 4161,
@@ -26636,7 +26639,7 @@
     "xmlpatternsvalidator-qt4": 3,
     "xmltext": 22,
     "xmlvalid": 1,
-    "xmlwf": 2397,
+    "xmlwf": 2399,
     "xparmed": 7,
     "xpath": 61,
     "xpclr": 1,
@@ -26694,16 +26697,16 @@
     "xy-plot": 88,
     "xyalign": 1,
     "xyz_sfetch": 1,
-    "xz": 7883,
-    "xzcat": 7658,
-    "xzcmp": 7658,
-    "xzdec": 7658,
-    "xzdiff": 7658,
-    "xzegrep": 7658,
-    "xzfgrep": 7658,
-    "xzgrep": 7658,
-    "xzless": 7658,
-    "xzmore": 7658,
+    "xz": 7886,
+    "xzcat": 7661,
+    "xzcmp": 7661,
+    "xzdec": 7661,
+    "xzdiff": 7661,
+    "xzegrep": 7661,
+    "xzfgrep": 7661,
+    "xzgrep": 7661,
+    "xzless": 7661,
+    "xzmore": 7661,
     "y2racc": 7,
     "yacc": 4,
     "yacht": 1,
@@ -26790,10 +26793,10 @@
     "zrun": 3,
     "zsh": 3,
     "zsh-5.8": 3,
-    "zstd": 5298,
-    "zstdcat": 5298,
-    "zstdgrep": 5096,
-    "zstdless": 5096,
-    "zstdmt": 5298,
+    "zstd": 5300,
+    "zstdcat": 5300,
+    "zstdgrep": 5098,
+    "zstdless": 5098,
+    "zstdmt": 5300,
     "ztr_dump": 2
 }
\ No newline at end of file
diff --git a/quay.io/biocontainers/h/hmftools-peach:2.0.0--hdfd78af_0.json b/quay.io/biocontainers/h/hmftools-peach:2.0.0--hdfd78af_0.json
new file mode 100644
index 0000000..3d99f26
--- /dev/null
+++ b/quay.io/biocontainers/h/hmftools-peach:2.0.0--hdfd78af_0.json
@@ -0,0 +1,179 @@
+{
+    "aserver": "/usr/local/bin/aserver",
+    "bunzip2": "/usr/local/bin/bunzip2",
+    "bzcat": "/usr/local/bin/bzcat",
+    "bzcmp": "/usr/local/bin/bzcmp",
+    "bzdiff": "/usr/local/bin/bzdiff",
+    "bzegrep": "/usr/local/bin/bzegrep",
+    "bzfgrep": "/usr/local/bin/bzfgrep",
+    "bzgrep": "/usr/local/bin/bzgrep",
+    "bzip2": "/usr/local/bin/bzip2",
+    "bzip2recover": "/usr/local/bin/bzip2recover",
+    "bzless": "/usr/local/bin/bzless",
+    "bzmore": "/usr/local/bin/bzmore",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "cairo-trace": "/usr/local/bin/cairo-trace",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "cjpeg": "/usr/local/bin/cjpeg",
+    "clear": "/usr/local/bin/clear",
+    "compile_et": "/usr/local/bin/compile_et",
+    "cups-config": "/usr/local/bin/cups-config",
+    "derb": "/usr/local/bin/derb",
+    "djpeg": "/usr/local/bin/djpeg",
+    "fax2ps": "/usr/local/bin/fax2ps",
+    "fax2tiff": "/usr/local/bin/fax2tiff",
+    "fc-cache": "/usr/local/bin/fc-cache",
+    "fc-cat": "/usr/local/bin/fc-cat",
+    "fc-conflist": "/usr/local/bin/fc-conflist",
+    "fc-list": "/usr/local/bin/fc-list",
+    "fc-match": "/usr/local/bin/fc-match",
+    "fc-pattern": "/usr/local/bin/fc-pattern",
+    "fc-query": "/usr/local/bin/fc-query",
+    "fc-scan": "/usr/local/bin/fc-scan",
+    "fc-validate": "/usr/local/bin/fc-validate",
+    "freetype-config": "/usr/local/bin/freetype-config",
+    "genbrk": "/usr/local/bin/genbrk",
+    "gencfu": "/usr/local/bin/gencfu",
+    "gencnval": "/usr/local/bin/gencnval",
+    "gendict": "/usr/local/bin/gendict",
+    "genrb": "/usr/local/bin/genrb",
+    "gif2rgb": "/usr/local/bin/gif2rgb",
+    "gifbuild": "/usr/local/bin/gifbuild",
+    "gifclrmp": "/usr/local/bin/gifclrmp",
+    "giffix": "/usr/local/bin/giffix",
+    "giftext": "/usr/local/bin/giftext",
+    "giftool": "/usr/local/bin/giftool",
+    "gss-client": "/usr/local/bin/gss-client",
+    "hb-info": "/usr/local/bin/hb-info",
+    "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure",
+    "hb-shape": "/usr/local/bin/hb-shape",
+    "hb-subset": "/usr/local/bin/hb-subset",
+    "hb-view": "/usr/local/bin/hb-view",
+    "icu-config": "/usr/local/bin/icu-config",
+    "icuexportdata": "/usr/local/bin/icuexportdata",
+    "icuinfo": "/usr/local/bin/icuinfo",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "ippeveprinter": "/usr/local/bin/ippeveprinter",
+    "ipptool": "/usr/local/bin/ipptool",
+    "jar": "/usr/local/bin/jar",
+    "jarsigner": "/usr/local/bin/jarsigner",
+    "java": "/usr/local/bin/java",
+    "javac": "/usr/local/bin/javac",
+    "javadoc": "/usr/local/bin/javadoc",
+    "javap": "/usr/local/bin/javap",
+    "jcmd": "/usr/local/bin/jcmd",
+    "jconsole": "/usr/local/bin/jconsole",
+    "jdb": "/usr/local/bin/jdb",
+    "jdeprscan": "/usr/local/bin/jdeprscan",
+    "jdeps": "/usr/local/bin/jdeps",
+    "jfr": "/usr/local/bin/jfr",
+    "jhsdb": "/usr/local/bin/jhsdb",
+    "jimage": "/usr/local/bin/jimage",
+    "jinfo": "/usr/local/bin/jinfo",
+    "jlink": "/usr/local/bin/jlink",
+    "jmap": "/usr/local/bin/jmap",
+    "jmod": "/usr/local/bin/jmod",
+    "jpackage": "/usr/local/bin/jpackage",
+    "jpegtran": "/usr/local/bin/jpegtran",
+    "jpgicc": "/usr/local/bin/jpgicc",
+    "jps": "/usr/local/bin/jps",
+    "jrunscript": "/usr/local/bin/jrunscript",
+    "jshell": "/usr/local/bin/jshell",
+    "jstack": "/usr/local/bin/jstack",
+    "jstat": "/usr/local/bin/jstat",
+    "jstatd": "/usr/local/bin/jstatd",
+    "jwebserver": "/usr/local/bin/jwebserver",
+    "k5srvutil": "/usr/local/bin/k5srvutil",
+    "kadmin": "/usr/local/bin/kadmin",
+    "kdestroy": "/usr/local/bin/kdestroy",
+    "keyctl": "/usr/local/bin/keyctl",
+    "keytool": "/usr/local/bin/keytool",
+    "kinit": "/usr/local/bin/kinit",
+    "klist": "/usr/local/bin/klist",
+    "kpasswd": "/usr/local/bin/kpasswd",
+    "krb5-config": "/usr/local/bin/krb5-config",
+    "ksu": "/usr/local/bin/ksu",
+    "kswitch": "/usr/local/bin/kswitch",
+    "ktutil": "/usr/local/bin/ktutil",
+    "kvno": "/usr/local/bin/kvno",
+    "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
+    "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
+    "libpng-config": "/usr/local/bin/libpng-config",
+    "libpng16-config": "/usr/local/bin/libpng16-config",
+    "linkicc": "/usr/local/bin/linkicc",
+    "lzcat": "/usr/local/bin/lzcat",
+    "lzcmp": "/usr/local/bin/lzcmp",
+    "lzdiff": "/usr/local/bin/lzdiff",
+    "lzegrep": "/usr/local/bin/lzegrep",
+    "lzfgrep": "/usr/local/bin/lzfgrep",
+    "lzgrep": "/usr/local/bin/lzgrep",
+    "lzless": "/usr/local/bin/lzless",
+    "lzma": "/usr/local/bin/lzma",
+    "lzmadec": "/usr/local/bin/lzmadec",
+    "lzmainfo": "/usr/local/bin/lzmainfo",
+    "lzmore": "/usr/local/bin/lzmore",
+    "makeconv": "/usr/local/bin/makeconv",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "openssl": "/usr/local/bin/openssl",
+    "pal2rgb": "/usr/local/bin/pal2rgb",
+    "pcre2-config": "/usr/local/bin/pcre2-config",
+    "pcre2grep": "/usr/local/bin/pcre2grep",
+    "pcre2test": "/usr/local/bin/pcre2test",
+    "peach": "/usr/local/bin/peach",
+    "pkgdata": "/usr/local/bin/pkgdata",
+    "png-fix-itxt": "/usr/local/bin/png-fix-itxt",
+    "pngfix": "/usr/local/bin/pngfix",
+    "ppm2tiff": "/usr/local/bin/ppm2tiff",
+    "psicc": "/usr/local/bin/psicc",
+    "raw2tiff": "/usr/local/bin/raw2tiff",
+    "rdjpgcom": "/usr/local/bin/rdjpgcom",
+    "reset": "/usr/local/bin/reset",
+    "rmiregistry": "/usr/local/bin/rmiregistry",
+    "sclient": "/usr/local/bin/sclient",
+    "serialver": "/usr/local/bin/serialver",
+    "sim_client": "/usr/local/bin/sim_client",
+    "tabs": "/usr/local/bin/tabs",
+    "tic": "/usr/local/bin/tic",
+    "tiff2bw": "/usr/local/bin/tiff2bw",
+    "tiff2pdf": "/usr/local/bin/tiff2pdf",
+    "tiff2ps": "/usr/local/bin/tiff2ps",
+    "tiff2rgba": "/usr/local/bin/tiff2rgba",
+    "tiffcmp": "/usr/local/bin/tiffcmp",
+    "tiffcp": "/usr/local/bin/tiffcp",
+    "tiffcrop": "/usr/local/bin/tiffcrop",
+    "tiffdither": "/usr/local/bin/tiffdither",
+    "tiffdump": "/usr/local/bin/tiffdump",
+    "tiffinfo": "/usr/local/bin/tiffinfo",
+    "tiffmedian": "/usr/local/bin/tiffmedian",
+    "tiffset": "/usr/local/bin/tiffset",
+    "tiffsplit": "/usr/local/bin/tiffsplit",
+    "tificc": "/usr/local/bin/tificc",
+    "tjbench": "/usr/local/bin/tjbench",
+    "toe": "/usr/local/bin/toe",
+    "tput": "/usr/local/bin/tput",
+    "transicc": "/usr/local/bin/transicc",
+    "tset": "/usr/local/bin/tset",
+    "unlzma": "/usr/local/bin/unlzma",
+    "unxz": "/usr/local/bin/unxz",
+    "unzstd": "/usr/local/bin/unzstd",
+    "uuclient": "/usr/local/bin/uuclient",
+    "wrjpgcom": "/usr/local/bin/wrjpgcom",
+    "xmlwf": "/usr/local/bin/xmlwf",
+    "xz": "/usr/local/bin/xz",
+    "xzcat": "/usr/local/bin/xzcat",
+    "xzcmp": "/usr/local/bin/xzcmp",
+    "xzdec": "/usr/local/bin/xzdec",
+    "xzdiff": "/usr/local/bin/xzdiff",
+    "xzegrep": "/usr/local/bin/xzegrep",
+    "xzfgrep": "/usr/local/bin/xzfgrep",
+    "xzgrep": "/usr/local/bin/xzgrep",
+    "xzless": "/usr/local/bin/xzless",
+    "xzmore": "/usr/local/bin/xzmore",
+    "zstd": "/usr/local/bin/zstd",
+    "zstdcat": "/usr/local/bin/zstdcat",
+    "zstdgrep": "/usr/local/bin/zstdgrep",
+    "zstdless": "/usr/local/bin/zstdless",
+    "zstdmt": "/usr/local/bin/zstdmt"
+}
\ No newline at end of file
diff --git a/quay.io/biocontainers/h/hmftools-redux:1.0_beta--hdfd78af_0.json b/quay.io/biocontainers/h/hmftools-redux:1.0_beta--hdfd78af_0.json
new file mode 100644
index 0000000..a700944
--- /dev/null
+++ b/quay.io/biocontainers/h/hmftools-redux:1.0_beta--hdfd78af_0.json
@@ -0,0 +1,184 @@
+{
+    "aserver": "/usr/local/bin/aserver",
+    "bunzip2": "/usr/local/bin/bunzip2",
+    "bzcat": "/usr/local/bin/bzcat",
+    "bzcmp": "/usr/local/bin/bzcmp",
+    "bzdiff": "/usr/local/bin/bzdiff",
+    "bzegrep": "/usr/local/bin/bzegrep",
+    "bzfgrep": "/usr/local/bin/bzfgrep",
+    "bzgrep": "/usr/local/bin/bzgrep",
+    "bzip2": "/usr/local/bin/bzip2",
+    "bzip2recover": "/usr/local/bin/bzip2recover",
+    "bzless": "/usr/local/bin/bzless",
+    "bzmore": "/usr/local/bin/bzmore",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "cairo-trace": "/usr/local/bin/cairo-trace",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "cjpeg": "/usr/local/bin/cjpeg",
+    "clear": "/usr/local/bin/clear",
+    "compile_et": "/usr/local/bin/compile_et",
+    "cups-config": "/usr/local/bin/cups-config",
+    "derb": "/usr/local/bin/derb",
+    "djpeg": "/usr/local/bin/djpeg",
+    "fax2ps": "/usr/local/bin/fax2ps",
+    "fax2tiff": "/usr/local/bin/fax2tiff",
+    "fc-cache": "/usr/local/bin/fc-cache",
+    "fc-cat": "/usr/local/bin/fc-cat",
+    "fc-conflist": "/usr/local/bin/fc-conflist",
+    "fc-list": "/usr/local/bin/fc-list",
+    "fc-match": "/usr/local/bin/fc-match",
+    "fc-pattern": "/usr/local/bin/fc-pattern",
+    "fc-query": "/usr/local/bin/fc-query",
+    "fc-scan": "/usr/local/bin/fc-scan",
+    "fc-validate": "/usr/local/bin/fc-validate",
+    "freetype-config": "/usr/local/bin/freetype-config",
+    "genbrk": "/usr/local/bin/genbrk",
+    "gencfu": "/usr/local/bin/gencfu",
+    "gencnval": "/usr/local/bin/gencnval",
+    "gendict": "/usr/local/bin/gendict",
+    "genrb": "/usr/local/bin/genrb",
+    "gif2rgb": "/usr/local/bin/gif2rgb",
+    "gifbuild": "/usr/local/bin/gifbuild",
+    "gifclrmp": "/usr/local/bin/gifclrmp",
+    "giffix": "/usr/local/bin/giffix",
+    "giftext": "/usr/local/bin/giftext",
+    "giftool": "/usr/local/bin/giftool",
+    "gss-client": "/usr/local/bin/gss-client",
+    "hb-info": "/usr/local/bin/hb-info",
+    "hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure",
+    "hb-shape": "/usr/local/bin/hb-shape",
+    "hb-subset": "/usr/local/bin/hb-subset",
+    "hb-view": "/usr/local/bin/hb-view",
+    "icu-config": "/usr/local/bin/icu-config",
+    "icuexportdata": "/usr/local/bin/icuexportdata",
+    "icuinfo": "/usr/local/bin/icuinfo",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "ippeveprinter": "/usr/local/bin/ippeveprinter",
+    "ipptool": "/usr/local/bin/ipptool",
+    "jar": "/usr/local/bin/jar",
+    "jarsigner": "/usr/local/bin/jarsigner",
+    "java": "/usr/local/bin/java",
+    "javac": "/usr/local/bin/javac",
+    "javadoc": "/usr/local/bin/javadoc",
+    "javap": "/usr/local/bin/javap",
+    "jcmd": "/usr/local/bin/jcmd",
+    "jconsole": "/usr/local/bin/jconsole",
+    "jdb": "/usr/local/bin/jdb",
+    "jdeprscan": "/usr/local/bin/jdeprscan",
+    "jdeps": "/usr/local/bin/jdeps",
+    "jfr": "/usr/local/bin/jfr",
+    "jhsdb": "/usr/local/bin/jhsdb",
+    "jimage": "/usr/local/bin/jimage",
+    "jinfo": "/usr/local/bin/jinfo",
+    "jlink": "/usr/local/bin/jlink",
+    "jmap": "/usr/local/bin/jmap",
+    "jmod": "/usr/local/bin/jmod",
+    "jpackage": "/usr/local/bin/jpackage",
+    "jpegtran": "/usr/local/bin/jpegtran",
+    "jpgicc": "/usr/local/bin/jpgicc",
+    "jps": "/usr/local/bin/jps",
+    "jrunscript": "/usr/local/bin/jrunscript",
+    "jshell": "/usr/local/bin/jshell",
+    "jstack": "/usr/local/bin/jstack",
+    "jstat": "/usr/local/bin/jstat",
+    "jstatd": "/usr/local/bin/jstatd",
+    "jwebserver": "/usr/local/bin/jwebserver",
+    "k5srvutil": "/usr/local/bin/k5srvutil",
+    "kadmin": "/usr/local/bin/kadmin",
+    "kdestroy": "/usr/local/bin/kdestroy",
+    "keyctl": "/usr/local/bin/keyctl",
+    "keytool": "/usr/local/bin/keytool",
+    "kinit": "/usr/local/bin/kinit",
+    "klist": "/usr/local/bin/klist",
+    "kpasswd": "/usr/local/bin/kpasswd",
+    "krb5-config": "/usr/local/bin/krb5-config",
+    "ksu": "/usr/local/bin/ksu",
+    "kswitch": "/usr/local/bin/kswitch",
+    "ktutil": "/usr/local/bin/ktutil",
+    "kvno": "/usr/local/bin/kvno",
+    "libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
+    "libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
+    "libpng-config": "/usr/local/bin/libpng-config",
+    "libpng16-config": "/usr/local/bin/libpng16-config",
+    "linkicc": "/usr/local/bin/linkicc",
+    "lz4": "/usr/local/bin/lz4",
+    "lz4c": "/usr/local/bin/lz4c",
+    "lz4cat": "/usr/local/bin/lz4cat",
+    "lzcat": "/usr/local/bin/lzcat",
+    "lzcmp": "/usr/local/bin/lzcmp",
+    "lzdiff": "/usr/local/bin/lzdiff",
+    "lzegrep": "/usr/local/bin/lzegrep",
+    "lzfgrep": "/usr/local/bin/lzfgrep",
+    "lzgrep": "/usr/local/bin/lzgrep",
+    "lzless": "/usr/local/bin/lzless",
+    "lzma": "/usr/local/bin/lzma",
+    "lzmadec": "/usr/local/bin/lzmadec",
+    "lzmainfo": "/usr/local/bin/lzmainfo",
+    "lzmore": "/usr/local/bin/lzmore",
+    "makeconv": "/usr/local/bin/makeconv",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "openssl": "/usr/local/bin/openssl",
+    "pal2rgb": "/usr/local/bin/pal2rgb",
+    "pcre2-config": "/usr/local/bin/pcre2-config",
+    "pcre2grep": "/usr/local/bin/pcre2grep",
+    "pcre2test": "/usr/local/bin/pcre2test",
+    "pkgdata": "/usr/local/bin/pkgdata",
+    "png-fix-itxt": "/usr/local/bin/png-fix-itxt",
+    "pngfix": "/usr/local/bin/pngfix",
+    "ppm2tiff": "/usr/local/bin/ppm2tiff",
+    "psicc": "/usr/local/bin/psicc",
+    "raw2tiff": "/usr/local/bin/raw2tiff",
+    "rdjpgcom": "/usr/local/bin/rdjpgcom",
+    "redux": "/usr/local/bin/redux",
+    "reset": "/usr/local/bin/reset",
+    "rmiregistry": "/usr/local/bin/rmiregistry",
+    "sambamba": "/usr/local/bin/sambamba",
+    "sclient": "/usr/local/bin/sclient",
+    "serialver": "/usr/local/bin/serialver",
+    "sim_client": "/usr/local/bin/sim_client",
+    "tabs": "/usr/local/bin/tabs",
+    "tic": "/usr/local/bin/tic",
+    "tiff2bw": "/usr/local/bin/tiff2bw",
+    "tiff2pdf": "/usr/local/bin/tiff2pdf",
+    "tiff2ps": "/usr/local/bin/tiff2ps",
+    "tiff2rgba": "/usr/local/bin/tiff2rgba",
+    "tiffcmp": "/usr/local/bin/tiffcmp",
+    "tiffcp": "/usr/local/bin/tiffcp",
+    "tiffcrop": "/usr/local/bin/tiffcrop",
+    "tiffdither": "/usr/local/bin/tiffdither",
+    "tiffdump": "/usr/local/bin/tiffdump",
+    "tiffinfo": "/usr/local/bin/tiffinfo",
+    "tiffmedian": "/usr/local/bin/tiffmedian",
+    "tiffset": "/usr/local/bin/tiffset",
+    "tiffsplit": "/usr/local/bin/tiffsplit",
+    "tificc": "/usr/local/bin/tificc",
+    "tjbench": "/usr/local/bin/tjbench",
+    "toe": "/usr/local/bin/toe",
+    "tput": "/usr/local/bin/tput",
+    "transicc": "/usr/local/bin/transicc",
+    "tset": "/usr/local/bin/tset",
+    "unlz4": "/usr/local/bin/unlz4",
+    "unlzma": "/usr/local/bin/unlzma",
+    "unxz": "/usr/local/bin/unxz",
+    "unzstd": "/usr/local/bin/unzstd",
+    "uuclient": "/usr/local/bin/uuclient",
+    "wrjpgcom": "/usr/local/bin/wrjpgcom",
+    "xmlwf": "/usr/local/bin/xmlwf",
+    "xz": "/usr/local/bin/xz",
+    "xzcat": "/usr/local/bin/xzcat",
+    "xzcmp": "/usr/local/bin/xzcmp",
+    "xzdec": "/usr/local/bin/xzdec",
+    "xzdiff": "/usr/local/bin/xzdiff",
+    "xzegrep": "/usr/local/bin/xzegrep",
+    "xzfgrep": "/usr/local/bin/xzfgrep",
+    "xzgrep": "/usr/local/bin/xzgrep",
+    "xzless": "/usr/local/bin/xzless",
+    "xzmore": "/usr/local/bin/xzmore",
+    "zstd": "/usr/local/bin/zstd",
+    "zstdcat": "/usr/local/bin/zstdcat",
+    "zstdgrep": "/usr/local/bin/zstdgrep",
+    "zstdless": "/usr/local/bin/zstdless",
+    "zstdmt": "/usr/local/bin/zstdmt"
+}
\ No newline at end of file
diff --git a/quay.io/biocontainers/m/mechanize:0.2.5.json b/quay.io/biocontainers/m/mechanize:0.2.5.json
new file mode 100644
index 0000000..afcf382
--- /dev/null
+++ b/quay.io/biocontainers/m/mechanize:0.2.5.json
@@ -0,0 +1,37 @@
+{
+    "2to3": "/usr/local/bin/2to3",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "clear": "/usr/local/bin/clear",
+    "easy_install": "/usr/local/bin/easy_install",
+    "idle": "/usr/local/bin/idle",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "openssl": "/usr/local/bin/openssl",
+    "pip": "/usr/local/bin/pip",
+    "pydoc": "/usr/local/bin/pydoc",
+    "python": "/usr/local/bin/python",
+    "python-config": "/usr/local/bin/python-config",
+    "python2": "/usr/local/bin/python2",
+    "python2-config": "/usr/local/bin/python2-config",
+    "python2.7": "/usr/local/bin/python2.7",
+    "python2.7-config": "/usr/local/bin/python2.7-config",
+    "reset": "/usr/local/bin/reset",
+    "smtpd.py": "/usr/local/bin/smtpd.py",
+    "sqlite3": "/usr/local/bin/sqlite3",
+    "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
+    "tabs": "/usr/local/bin/tabs",
+    "tclsh": "/usr/local/bin/tclsh",
+    "tclsh8.6": "/usr/local/bin/tclsh8.6",
+    "tic": "/usr/local/bin/tic",
+    "toe": "/usr/local/bin/toe",
+    "tput": "/usr/local/bin/tput",
+    "tset": "/usr/local/bin/tset",
+    "wheel": "/usr/local/bin/wheel",
+    "wish": "/usr/local/bin/wish",
+    "wish8.6": "/usr/local/bin/wish8.6",
+    "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld",
+    "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld"
+}
\ No newline at end of file
diff --git a/quay.io/biocontainers/p/pydustmasker:1.0.0--py310h7c593f9_0.json b/quay.io/biocontainers/p/pydustmasker:1.0.0--py310h7c593f9_0.json
new file mode 100644
index 0000000..74f6819
--- /dev/null
+++ b/quay.io/biocontainers/p/pydustmasker:1.0.0--py310h7c593f9_0.json
@@ -0,0 +1,73 @@
+{
+    "2to3": "/usr/local/bin/2to3",
+    "2to3-3.10": "/usr/local/bin/2to3-3.10",
+    "bunzip2": "/usr/local/bin/bunzip2",
+    "bzcat": "/usr/local/bin/bzcat",
+    "bzcmp": "/usr/local/bin/bzcmp",
+    "bzdiff": "/usr/local/bin/bzdiff",
+    "bzegrep": "/usr/local/bin/bzegrep",
+    "bzfgrep": "/usr/local/bin/bzfgrep",
+    "bzgrep": "/usr/local/bin/bzgrep",
+    "bzip2": "/usr/local/bin/bzip2",
+    "bzip2recover": "/usr/local/bin/bzip2recover",
+    "bzless": "/usr/local/bin/bzless",
+    "bzmore": "/usr/local/bin/bzmore",
+    "c_rehash": "/usr/local/bin/c_rehash",
+    "captoinfo": "/usr/local/bin/captoinfo",
+    "clear": "/usr/local/bin/clear",
+    "idle3": "/usr/local/bin/idle3",
+    "idle3.10": "/usr/local/bin/idle3.10",
+    "infocmp": "/usr/local/bin/infocmp",
+    "infotocap": "/usr/local/bin/infotocap",
+    "lzcat": "/usr/local/bin/lzcat",
+    "lzcmp": "/usr/local/bin/lzcmp",
+    "lzdiff": "/usr/local/bin/lzdiff",
+    "lzegrep": "/usr/local/bin/lzegrep",
+    "lzfgrep": "/usr/local/bin/lzfgrep",
+    "lzgrep": "/usr/local/bin/lzgrep",
+    "lzless": "/usr/local/bin/lzless",
+    "lzma": "/usr/local/bin/lzma",
+    "lzmadec": "/usr/local/bin/lzmadec",
+    "lzmainfo": "/usr/local/bin/lzmainfo",
+    "lzmore": "/usr/local/bin/lzmore",
+    "ncurses6-config": "/usr/local/bin/ncurses6-config",
+    "ncursesw6-config": "/usr/local/bin/ncursesw6-config",
+    "openssl": "/usr/local/bin/openssl",
+    "pip": "/usr/local/bin/pip",
+    "pip3": "/usr/local/bin/pip3",
+    "pydoc": "/usr/local/bin/pydoc",
+    "pydoc3": "/usr/local/bin/pydoc3",
+    "pydoc3.10": "/usr/local/bin/pydoc3.10",
+    "python": "/usr/local/bin/python",
+    "python3": "/usr/local/bin/python3",
+    "python3-config": "/usr/local/bin/python3-config",
+    "python3.1": "/usr/local/bin/python3.1",
+    "python3.10": "/usr/local/bin/python3.10",
+    "python3.10-config": "/usr/local/bin/python3.10-config",
+    "reset": "/usr/local/bin/reset",
+    "sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
+    "tabs": "/usr/local/bin/tabs",
+    "tclsh": "/usr/local/bin/tclsh",
+    "tclsh8.6": "/usr/local/bin/tclsh8.6",
+    "tic": "/usr/local/bin/tic",
+    "toe": "/usr/local/bin/toe",
+    "tput": "/usr/local/bin/tput",
+    "tset": "/usr/local/bin/tset",
+    "unlzma": "/usr/local/bin/unlzma",
+    "unxz": "/usr/local/bin/unxz",
+    "wheel": "/usr/local/bin/wheel",
+    "wish": "/usr/local/bin/wish",
+    "wish8.6": "/usr/local/bin/wish8.6",
+    "x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld",
+    "x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld",
+    "xz": "/usr/local/bin/xz",
+    "xzcat": "/usr/local/bin/xzcat",
+    "xzcmp": "/usr/local/bin/xzcmp",
+    "xzdec": "/usr/local/bin/xzdec",
+    "xzdiff": "/usr/local/bin/xzdiff",
+    "xzegrep": "/usr/local/bin/xzegrep",
+    "xzfgrep": "/usr/local/bin/xzfgrep",
+    "xzgrep": "/usr/local/bin/xzgrep",
+    "xzless": "/usr/local/bin/xzless",
+    "xzmore": "/usr/local/bin/xzmore"
+}
\ No newline at end of file
diff --git a/quay.io/biocontainers/r/rukki:0.3.0--h919a2d8_0.json b/quay.io/biocontainers/r/rukki:0.3.0--h919a2d8_0.json
new file mode 100644
index 0000000..4baf553
--- /dev/null
+++ b/quay.io/biocontainers/r/rukki:0.3.0--h919a2d8_0.json
@@ -0,0 +1,3 @@
+{
+    "rukki": "/usr/local/bin/rukki"
+}
\ No newline at end of file