From 4fcd2b92f4703addfcd60440ec7bdf92d5eca550 Mon Sep 17 00:00:00 2001
From: Ryan Spangler <ryan.spangler@gmail.com>
Date: Tue, 24 May 2022 13:55:25 -0700
Subject: [PATCH] packaging templates with package

---
 Dockerfile | 19 +++++++++++++++++++
 env.yml    |  5 +++--
 setup.py   |  2 ++
 3 files changed, 24 insertions(+), 2 deletions(-)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..70c669b
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,19 @@
+FROM continuumio/miniconda3
+#  FROM python:3.9-slim
+
+WORKDIR /home
+
+COPY env.yml .
+RUN conda env create -f env.yml
+SHELL ["conda", "run", "-n", "vivarium-models", "/bin/bash", "-c"]
+# RUN ["/bin/bash", "-c", "conda", "activate", "vivarium-models"]
+# RUN ["conda", "env", "list"]
+
+ENTRYPOINT ["conda", "run", "--no-capture-output", "-n", "vivarium-models", "python", "-m", "vivarium_models.composites.actin_fiber"]
+
+# RUN conda activate vivarium-models
+# RUN conda init bash
+# RUN ["conda", "init", "bash"]
+#  RUN conda activate vivarium-models
+
+
diff --git a/env.yml b/env.yml
index 0d3de58..fb055f5 100644
--- a/env.yml
+++ b/env.yml
@@ -1,9 +1,10 @@
+
 name: vivarium-models
 channels:
   - conda-forge
 dependencies:
   - python=3.8
-  - readdy
+  - conda-forge::readdy
   - pip
   - pip:
-    - "-e .[dev]"
+    - "vivarium_models @ git+https://github.com/simularium/vivarium-models.git"
diff --git a/setup.py b/setup.py
index 4b71a05..f8f2a9c 100644
--- a/setup.py
+++ b/setup.py
@@ -80,6 +80,8 @@
     keywords="vivarium_models",
     name="vivarium_models",
     packages=find_packages(exclude=["tests", "*.tests", "*.tests.*"]),
+    package_data={
+        '': ['templates/*']},
     python_requires=">=3.8",
     setup_requires=setup_requirements,
     test_suite="vivarium_models/tests",