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Add CHANGELOG.md summarizing changes from base repo (#2)
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* Add CHANGELOG summarizing changes from base repo

* Update README with notice of changes
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jessicasyu authored Aug 9, 2024
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32 changes: 32 additions & 0 deletions CHANGELOG.md
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This document provides a detailed timeline of changes made to the source code of the Cytosim simulation engine hosted at [https://gitlab.com/f-nedelec/cytosim](https://gitlab.com/f-nedelec/cytosim).

### 2024-06-07

- Add config files used by [`subcell-pipeline`](https://github.com/simularium/subcell-pipeline)
- Add config templates used by [`subcell-pipeline`](https://github.com/simularium/subcell-pipeline)

### 2023-06-16

- Change dimensionality from 2 to 3

> See commit [`70c73c7`](https://github.com/simularium/Cytosim/commit/70c73c7cd17d3d03e49e9b7da35cdcbf645b6a3b)
### 2023-05-03

- Add calculation and reporting for segment bending energy
- Change time reporting to scientific notation

> See commit [`b2a8293`](https://github.com/simularium/Cytosim/commit/b2a8293ac0a6492b7ca51cba44f11ae70f33485f)
### 2023-03-13

- Resync with source code from [https://gitlab.com/f-nedelec/cytosim](https://gitlab.com/f-nedelec/cytosim) at commit [`5ff0f784`](https://gitlab.com/f-nedelec/cytosim/-/tree/5ff0f78474de7217aa194d98f98516395fb3d453)

### 2022-06-08

- Added `Dockerfile` and associated scripts to build Docker image from source code
- Added GitHub-specific workflows for building Docker image

### 2022-05-18

- Source code from [https://gitlab.com/f-nedelec/cytosim](https://gitlab.com/f-nedelec/cytosim) at commit [`6bc43897`](https://gitlab.com/f-nedelec/cytosim/-/commit/6bc43897e35cd599861d1c96eae05c064be8a937)
3 changes: 3 additions & 0 deletions README.md
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> [!NOTE]
> This repository is adapted from the base Cytosim repository hosted at [https://gitlab.com/f-nedelec/cytosim](https://gitlab.com/f-nedelec/cytosim). Please see [CHANGELOG.md](CHANGELOG.md) for more information and a summary of changes.
# Cytosim

Cytosim is a cytoskeleton simulation suite designed to handle large systems of flexible filaments with associated proteins such as molecular motors. It is a versatile base that has been used to study actin and microtubule systems in 1D, 2D and 3D. It is built around a cross-platform C++ core engine running on UNIX, Mac OSX, GNU/Linux and within Cygwin on Windows. The code is modular and extensible, making Cytosim a convenient base that can be customized to meet particular tasks. Some of the most common tasks encountered during a simulation project are implemented in Python.
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