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simpsonlab

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  1. preqclr preqclr Public

    preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.

    C++ 4 2

  2. ncov-parser ncov-parser Public

    Python 2 3

  3. cookiecutter-snakemake cookiecutter-snakemake Public

    A cookiecutter template for snakemake projects used in the Simpson Lab

    Python 1 1

  4. circos-plots circos-plots Public

    A set of scripts to create files required to generate a circos plot for genomic data

    Python 1

  5. simpsonlab.github.io simpsonlab.github.io Public

    SCSS 8

  6. nanopolish nanopolish Public

    Forked from jts/nanopolish

    Signal-level algorithms for MinION data

    C++

Repositories

Showing 10 of 12 repositories
  • simpsonlab.github.io Public
    simpsonlab/simpsonlab.github.io’s past year of commit activity
    SCSS 0 8 0 0 Updated Feb 21, 2024
  • createivf Public
    simpsonlab/createivf’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 13, 2023
  • circos-plots Public

    A set of scripts to create files required to generate a circos plot for genomic data

    simpsonlab/circos-plots’s past year of commit activity
    Python 1 0 0 0 Updated Jan 6, 2023
  • cookiecutter-py Public

    A cookiecutter template for Python packages

    simpsonlab/cookiecutter-py’s past year of commit activity
    Python 0 1 0 0 Updated Dec 15, 2022
  • cookiecutter-snakemake Public

    A cookiecutter template for snakemake projects used in the Simpson Lab

    simpsonlab/cookiecutter-snakemake’s past year of commit activity
    Python 1 1 0 0 Updated Jul 29, 2022
  • mbtools Public Forked from jts/mbtools
    simpsonlab/mbtools’s past year of commit activity
    Rust 0 MIT 3 0 0 Updated Jun 2, 2022
  • ncov-parser Public
    simpsonlab/ncov-parser’s past year of commit activity
    Python 2 MIT 3 0 0 Updated May 5, 2022
  • ncov-qa Public

    Quality assessment workflow for COVID-19

    simpsonlab/ncov-qa’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 26, 2022
  • ncov-primers Public
    simpsonlab/ncov-primers’s past year of commit activity
    Python 0 0 0 0 Updated Apr 29, 2021
  • ncov-sim Public

    A Python package for sequence simulation for the nCoV project

    simpsonlab/ncov-sim’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jun 26, 2020
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