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RTcores-database-wickercode.fasta
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RTcores-database-wickercode.fasta
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>RT_1731#RLC+1731
YEEAWEEAMGLEYKALLANETWKLADLPRNRRCVACKWVYSLKRDVSGRIERFKARLVAK
GCSQKFGVDYFETFSPVCRLESVRLILALAAEMQLYLHHMDVCTAYLNSELKDTVYMKQP
QGFTDAANPDQVLLLRKAIYGLKQSGREWNSKLDGVLKDLGFKACNHEPCLYQQSGQGNL
MLILVYVDDLILACQSREDMEDLKAKISESFECTDKGPLHLFLGMEVQRDGDLGEITLGH
SQYIKELLRDYGS
>RT_17.6#RLG+NA
LNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILG
KLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMN
DILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTF
LGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA
>RT_297#RLG+NA
LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILG
KLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMN
NILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANF
LGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYA
>RT_412#RLG+NA
IKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDIL
DQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMM
TIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVT
FLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFA
>RT_Amn-ichi#RLG+V_CLADE
LREFIETNLRKGFIRPSQSPAASPVMFVKKKSGDLRLVVDYRALNNITKRNSYPLPLISD
LLDRLRGAKVYTKLDLRGAYNLVRIREGDEWKTAFQTKFGLFESRVMNYGLCGAPATFQH
FVNDIFQDYLDRFLIIYLDDFLVFSRSQSEHENHVKMVLQRLRDHGLYAKLEKCAFDLQE
VDFLGYRISPLGLSMDPAKVSAVLERAPTNKKEVQRFLGFANYYRKFIPDFA
>RT_Amn-ni#RLG+V_CLADE
MESYIEESLAAGIIRQSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMST
AFEILQEASIFTKLDLRNAYHLVRIKQGDEWKTAFNTPTGHYEYLVMPFGLTNAPAVFQA
LINDVLRDMLNKFVFVYLDDILIFSSSLQEHIFHVRKVLQRLLNNHLYVKPEKCQFHVTQ
VKFLGFIIKPGQIQMDPQKIQAMVDWPSPSSVKEVQRFLGFANFYRKFILNFS
>RT_Amn-san#RLG+V_CLADE
MKEYISENLQRGFIRPSTSPAGAGFFFVEKKDGGLRPCIDYRGLNKITVKNRYPLPLISE
LFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQE
FVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPK
ISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFS
>RT_Araco#RLC+ORYCO
LYNPWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAK
GYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQP
QGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDI
LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEG
YAKEVLKKFKM
>RT_ASSBSV#retrovirus+NA
LGADCIYATSSPWNTPILPVPKADGKTYRMVQDFRAVNDVTTGVDLPVPDPHVSLSNLSP
KHQYFTVVDLANAFFSIPLHVDSQPLFAFTYDNQQYTYSVLPQGYRCSPGIFNRVLKDHL
KEIVIPDGVVLIQYVDDLLLAACSSDQCLAATKILLDFLATKGYKVKRSKVQTCRRTVLF
LGREVSAEGAGLSTAHRNSILHHPRPTTVSGLLSFLGLTGYSRTHIPDYT
>RT_Athila4-1#RLG+ATHILA
LDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASR
KDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPF
GLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVL
NWEKCHFMVKEGIVLDHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGFYRRFI
KDFA
>RT_B1147A04.5#RLG+TAT
LVSFLRANADVFAWRPADMPGVPREVIEHRLAVRSGARPVRQKVRRQAPERQAFIRSGYH
QIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDL
VVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIR
AIERMRPPSKLRDMQCVTGCMAALSRFISRLG
>RT_BAEVM#retrovirus+NA
LELGVLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKP
DYSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTRLPQGFKNSPTLFDE
ALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQI
CQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFA
>RT_Bagy-1#RLG+DEL
LNKGFIRPSSSPSCPVLFVKKKDGMDRMVVDYRPVNLVTIKNKYPLPRINDLYDQLTGSS
FFSKMDLRLGYHQIKIKNGDIPKKAFVTRYGQYEYTVMSFGLTNAPATFSRLMNSIFMEY
LDKFVVVYLDDILIYSMNEREHAEHLRLVLMKLREHRLYAKFSKCEFLGHVISGKGIAVN
PERVQAVLDWTQPESVKQVRSFLGLASYCRRFVENFS
>RT_Bagy-2#RLG+ATHILA
LEAGIIYPVAHSDWVSPVHCVPKKGGITVVPNDKNELIPHRIVTGYRMVIDFRKLNKATR
KDHYPLPFIDKMLERLSNTHFCFLDGYSGFSQISAAQSDQEKTTFTCPFGTFAYRRMAFG
LCNAPATFQRCMMAISSDFCEKIIEVFMDDFSVYGSSFDDYLSNLDRVLQRCKDTNLVLN
WEKCHFMVNEGIVLGHKISAKGIEVDKAKVDAIEKMPCPIDIRGIRSFLGHAGFYRRFIK
DFS
>RT_Batata#RLC+TORK
LYDPWFEAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVK
GFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQP
EGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDD
FVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLS
QEKYIEKVLERFHM
>RT_Beetle1#RLG+CRM
LAKGFVQESLSPCAVPVILVPKKDGTMRMCVDCRAINNITIKYRYPIPRLDDLLDELHGA
TIFSKIDLRSGYHQIRIKEGDEWKTAFKTKSGLYEWRVMPFGLTNAPSTFMRLMHEVLRP
FIGSFVVVYFDDILVYSNSEQDHLIHLKKVFLKLREKKLYAKMEKCEFFTSSVSFLGFII
SSQGISMDESKVEAIKSWPIPKSITEVRSFHGLASFYRRFIRGFS
>RT_Bel#BelPao#BelPao+NA
MVRSFMEMDSIQPNQALLDASDPTERHFAATHKRSTDGVYVVEYPFKEKAPPIDSTLPQA
INRFFSLERKFRRYPELKQQYEAFLDDYLQRGHMEKLTSAQVEESPDTCFYLPHHAVIKL
DSLTTKCRVVFDGSGKDSSGVSLNDRLHIGPPIQRDLFGVCLRFRQHQYVLCADVEKMFR
GIKVFKPHTNFQRIVWRTTENEPLLHFRLLTVTYGLAPSPFLAVRVLKQLADDHGHEYPA
AAHALLHDAYVDDIPTGANTFEELMILKDELIALLDKGKFKLRKWSSNSWRLLKSLPEED
RCFEPIQLLNKSAADSPVKVLGIQWNPGKDVLYLNLKGCDATISPTKRELLSQLSRIYDP
LGLVAPVTVLLKLIFQESW
>RT_BFV#retrovirus+NA
LRQGVLRQQNSEMNTPVYPVPKADGRWRMVLDYREVNKVTPLVATQNCHSASILNTLYRG
PYKSTLDLANGFWAHPIKPEDYWITAFTWGGKTYCWTVLPQGFLNSPALFTADVVDILKD
IPNVQVYVDDVYVSSATEQEHLDILETIFNRLSTAGYIVSLKKSKLAKETVEFLGFSISQ
NGRGLTDSYKQKLMDLQPPTTLRQLQSILGLINFARNFLPNFA
>RT_BIV#lentivirus+NA
LAEGKISEAAWDNPYNTPVFVIKKKGTGKWRMLMDFRELNKITVKGQEFSTGLPYPPGIK
ECEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNREGPIERFQWNVLPQGWICSPAIYQ
TTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDDHKQIVQEIRDKLGSYGFKTPDEKVQE
ERVKWIGFELTPKKWRFQPRQLKIKNPLTVNELQQLVGNCVWVQPEVKIPL
>RT_Blastopia#RLG+MICROPIA
VEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPIMEEVLEKLQSA
KWFTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQE
LINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKIKWKKCNFMQRRIHFLGHI
IEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFIPGYA
>RT_BLV#retrovirus+NA
LEAGYISPWDGPGNNPVFPVRKPNGTWRFVHDLRATNALTKPIPALSPGPPDLTAIPTHL
PHIICLDLKDAFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFAWRVLPQGFINSPALFERA
LQEPLRQVSAAFSQSLLVSYMDDILIASPTEEQRSQCYQALAARLRDLGFQVASEKTRQT
PSPVPFLGQMVHNQIVTYQSLPTLQISSPISLHQLQAVLGDLQWVSRGTPTTR
>RT_Boudicca#?+NA
RSRELIRSSNSPWSSPLHMVPKKDSNDWRPTDVYRRLNAKTIPDRYPLPHIHDLTATLKG
TTVSSKIDLVKAYDQIPMATNEIPKTAIITLFGLYEFLQMPFGLRNAAQTFQRFIDDVFR
GLNFVHAYVDDCLIASPDRESHLKHLDIVFDRLQRHGITVNIQKCQIGTNSLDFLGHTID
AQGIRPLRSKMVAILDYPEPTTIKQLRTFNGLVSFYRRFIPKCA
>RT_BRRV#Pararetrovirus+NA
VNKILQERFSLDLLGEKNKNKELIEIKLKDPNAEIFVPNNIPYTQRDIEEFKEDMEDLIN
KGLIRPSKSPHSAPAFYVENHSEIKRAKRRIVINYKAMNEATIGTPKTLPRADYIMNRLK
GKIWFSTLDVKSAYWQLRLTEESKPLTAFSYPPPKHYEWNVLPMGLKQAPGIFQEFMNRS
LHNLEHICLVYVDDIIIFSEKDKNDHLSKVLQVLKRCEDEGIILSQPKAKIAHKEIDFFG
LHISEGEIILQPHILEKLVLFPDEIENRKQLQRFLGNLNYISEKGFFKDFAKYRKELQKK
VSEKVPWKW
>RT_BsCVBV#Pararetrovirus+NA
IEDLKAQGVIGDAPLQLWERNQVKCKLEVINPDITISDKPLKHVSIGLKQQFQNQLDPLL
KMGLIRPSTSRHRTMAMIINSGTTVDPVTGEEKRGKERMVFNYKTLNDNTYRDPYSLPGI
NTIIQKVGRSKIYSKFDLKSGFHQVAMDPESIPWTAFLTPQGLFEWLVMPFGLKNAPAIF
QRKMDNCFSRYSDFIAVYIDDILVFSESERDHEKHLRVMLQVCQENGLVLSPTKMKVAVK
TIEFLGAILGNQCVQLQPHIIQKIVDFDEEHLQTKQGIRSWLGILNYARTYIPNIGTLLA
PFYEKTSPHGDKRL
>RT_BSGFV#Pararetrovirus+NA
IDRLKRLGFIGEEPLRHWKRNQIKCKLEIKNPDLIIEDRPLKHVTPAMKETMTKHVQRLL
DIKVIRPSTSKHRTTAIMVNSGTEIDPITGAEKKGKERLVFNYKRLNDNTEKDQYSLPGI
NTIIARISHSKIYSKFDLKSGFHQVAMEEESIPWTAFWAINGLYEWLVMPFGLKNAPAIF
QRKMDNCFRGTEKFIAVYIDDILIFSDSKEAHRTHLRQFITICEENGLVLSPTKMKIGVQ
QVDFLGATIGDSKVRLQPHIVKKVLETKEESLSETKALRRWLGILNYARAYIPDLGKILG
PLYSKTSGKGERKL
>RT_BSMyV#Pararetrovirus+NA
FKELKDQGYIGEEPLKHWQKNMVKCKLELKNPDITIQDKPLKHVTAKMRETMRAHIDKLL
QLKVIRPSSSRHRTTAMIVESGTEVDPKTGQEKRGKERLVFNFKRLNDNTEKDQYSLPGI
NTIISRIGNAKVYSKFDLKSGFHQVAMDPESIPWTAFLANNELYEWLVMPFGLKNAPAIF
QRKMDTCFKGTEAFIAVYIDDILVFSETEQLHRDHLRKFLEISKANGLILSPTKMKIGVK
TIDFLGASIGNSKIKLQPHIIKKIADFDDHRLKETKGLRAWLGILNYARNYIPNLGKTLG
PLYSKISPNGEKRM
>RT_BSOLV#Pararetrovirus+NA
IGKMKKLGYIGEEPLKHWEKNQVKCRIEVKNPDMIIEDRPLKHVTPTMKETMAKHVQKLL
ELKVIRPSSSKHRTTAMIVESGTEVDPMTGKERRGKERLVFNYKRLNDNTEKDQYSLPGI
NTIIKRIGNAKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIF
QRKMDNCFRGTEDFIAVYIDDILVFSETIHQHKEHLKKFMTICEKNGLVLSPTKMKIGTR
QIDFLGATIGNSKIKLQPHIIKKIIEMKDEELKEVKGLRKWLGILNYARSYIPKLGKILG
PLYAKTSPNGERRM
>RT_BSVAV#Pararetrovirus+NA
IRKLKDLGYIGEEPLKHWAKNQVKCRIEIKNPDLIIEDRPLKHVTPAMKESMKKHVDKLL
ELKVIRPSTSKHRTTAIIVQSGTEIDPLTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGI
NTIISRIGKSKIYSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIF
QRKMDNCFRGTEEFIAVYIDDILIFSDNISDHRKHLSKFLEICKANGLVLSPTKMKIGAK
EIDFLGATIGNSKIKLQPHIIKKIIETKDEELKETKGLRKWLGVLNYARAYIPNLGKTLG
PLYSKTSINGEKKM
>RT_Burdock#?+NA
LKDGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIPNVVWIL
SNLGKARFFTTLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAI
DDVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVE
YLGFMVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFA
>RT_CAEV#lentivirus+NA
VEEGKLGKAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQK
KKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQF
TMQEILEDWIQQHPEIQFGIYMDDIYIGSDLEIKKHREIVKDLANYIAQYGFTLPEEKRQ
KGYPAKWLGFELHPQTWKFQKHTLPELTKGTITLNKLQKLVGELVWRQSIIGKS
>RT_Calypso5-1#RLG+ATHILA
VARSRPHPISDSAWVSPVQVVLKKGGMTVIKNDKDELISTRTVTGWRMCIDYRKLNNATW
KDHYPLPFMDHMLERLARQSYYCFLDGYSSYNIAIDIKDQEKTTFTFPFGVFAYRCMPFG
LCNALATFQRCMMAIFSDMVEKCIEVFMDDFSVFGPSFDGCLSNLERVFRCEESNLVLNW
EKCHFMVQEGIVLGHKISVRGIEVDKVKIDVIEKLPPPMNVKRMRSFLGHDGFYRLIKDF
S
>RT_CaMV#Caulimovirus+NA
IEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLD
LKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIR
GKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAF
RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLE
IDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKEN
VPWRW
>RT_Cer1#RLG+NA
LNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGK
KLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGD
LLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKV
TLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFA
>RT_Cer10-1#RLG+NA
IEQSWKPENLGIEEISVAENSKKTALDLQAEFDRTIRYKSDGEHEVALPYNGNQNRLRSN
FNFARKRLEILYINLTKSQKSNIMDQYDAVIKDQLSAGIVERVWPNMIGADDVKYYTPHR
AVIKETSNTTKLRIVLDASSPPGPEPSLNDCLYAGDNLVTPLYGILLRGRIYPYVVVADI
EKAFHQVRLPTEFRNASLFLWLKDITKPPTPDNICTYRFTRIPFGVASSPWLLAASILHF
LDRNPNPLNQRVRENLYVDNCLIGTFDKSEITEIIKNSKDIFMKMKMNLREYVTNSEEHM
VAIEVEDQAKHRVIKLLGCEWDSHEDIDTLSVALAVLDIDHPTKRQVASKMAETFDPLGL
ITPLIVSFKRLMQNLW
>RT_Cer2#RLG+NA
IQSERIVESNTPWTSPIVLVKKKNGSLRVCLDFRKLNEVTIPDNYPLPRIDAIIEKVGGS
RYFSVLDMANGYLQLRLDAESSYKCGFITENKVYAYTHLPFGLKSAASYFQRALRQVLDG
LEDVMVYIDDVLIYSKTFEDHIRTLEMVLERFRKFNLKASPNKCEFFKESIVFLGHEISR
DNYSPNRVNVETIRSMPTPTNVNEVRRFVGMSGFFRKFIPNFS
>RT_Cer3#RLG+NA
IQSGRIVESNTPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVPDNYPLPRIDSIIEQIGGS
KYFTSLDMANGYLQLRLDAESSDKCGFITENKVYAYTHLPFGLRSAASYFQRDLKQVLGL
EKEVTVYIDDVLIFSKTFEEHLNSLRKVLERFRKFNLKVSPNKCEFFKQSITFLGHEINA
DNYKPNRINVDAIVNLPTPRNVGDVRRFIGMSGFFRKFLPNFS
>RT_Cer4#RLG+B_CLADE
LDLEVLEPITHSDWAAPIVVIRKKDTGKVRVCADFKCSGLNNSLIEEIHPLPTSDDLFGT
LQGCIFSKIDLKDAYLQIALDSESQKLAVINTHKGLFKYRRMTFGLKPAPAKFQKIIDKM
IAGLPGVAAYLDDVIVSANSLEEHEKVLHELLKRIKDYGFRISPEKCNFAQSEITFLGFI
IDKRGRRPDPKKTSVIRSMKAPTDQKQLMSFLGAICFYGRFVPKMS
>RT_Cer5#RLG+B_CLADE
QEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSR
LKGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKM
VSGLTGVAVYLDDIIISASSIEEHEKILRELFERIKEYGFRVSAEKCAFAQKQVTFLGFI
VDEHGRRPDPKKTEVIRSMKAPTDQKQLASFLGAVSFYSRFVPKMS
>RT_Cer6#RLG+B_CLADE
KDMGVITPITYSKWAAPIVVIRKKESNKIRVCADFKCSGLNSALKDEIHPLPTCEDLFAK
LKGSVFSKIDFRDAYLQIELDDESQELAVINTHLGLFKYVRMAFGLKPAPAVFQKIVDKL
ISGIPGVSAYLDDLIIAASSYDEHEAILRQLFDRIREYGFRVSPEKCMFAVSEISFLGFI
VDEKGRRPDPNKASKIRSMKAPGDQKQLSSFLGAVCFYSRFVPKMS
>RT_Cer7#BelPao+NA
IEFLQQQETIMHAPNEYTGAVVDEKLEMEKKTTQFFNNTIEKRENGYHVRLPFKEEVIDK
LPSNFAIAKKRLQSGLKANPQVKKLVNDVFEDQISKNILEEVDVSKDTEGMRIHYNPHSP
VLTPQKTTTKCRVVIDGSAHFKNEPSLNDAIYQGPTILPDSVDTRFRSGKTVLLADVEKA
FLQVHLNESDRDVTRVLWVKNPDLPPTRENLRVLRFTRVLFGLNVSPFLLGATILFHLDR
MEDKKLANTIARNLYVDNLIIATDDDSEAMFKLYNKVKTVFNGLSMNIREFQSNDQSFTD
LLDECDKTSESEVKVLGVKWSTKTDQITSSTTDIDILENSRRTVSSAIASIYDPMGLLVP
LLLPLKLFQRKLW
>RT_Cereba#RLG+CRM
LDKGYIRESLSPCDVPIILVPKKGWYIAYVCLLEALIILLFVIVILFLGMICIDELSGYT
IFSKVDLRSGYNQICMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAF
IGRFVVLYFDDILIYSRSLEEHLDHLRVVFLALRDARLFGNLGKCTFCTDRVSFLGYVVT
PQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRHFVRDFS
>RT_CERV+NA
IEEMLERVSSENPIDPEKSKQWMTATIELIDPKTIVEVKPMSYSPSDREEFDKQIKEPLD
LKVIKPSKSPHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLALVR
GKKIYSSFDCKSGFWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFQRHMQTAF
NQHSKYCCVYVDDILVFSNTEEEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLE
IDQGTHCPQNHILEHIHKFPDRIEDKKQLQRSLGILTYASDYIPKLASIRKPLQSKLKED
STWTW
>RT_CFG1#RLG+A_CLADE
IEHELDRLVAEGTISPVEFSEWATPIVPIVKSDKSIRICGDYKVTVNKVSKLDNYPIPKT
EDLYATLGGGTDYSKLDLSQAYQQLELDDSSKPYTTINTHKGLFVYNRLPYGVASAPGIF
QRTMENLLQGIPQVIVRVDDILVTGKNRRQHLENLEAVLNRLEKAGVKLKRSKCYFLRKE
VEYQGHRINSEGMQPIEGKVMAIKDAPAPTNVKELQAFLGMLNYYSCYLPRLS
>RT_Cft-1#RLG+PYRET
LAKGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGS
DWYTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRD
LLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFI
ISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDYS
>RT_Cgret#RLG+PYRET
LKKGYIRESTSPAGSPILFVPKKNGKLRLCVDYRMLNEMTIKNRYPLPLIDELQRLLHGA
NWFTALDLKGAYNLIRMKEGEEWKTAFRTRKGHFEYLVMPFGLTNAPATFQNMINQVLRK
FVDIFVVVYLDDILIFSPTLKQHKEHVHLVLQALQNAKLLVEPEKSKFHAQEVEYLGFTI
TPGHIHMSKDKVRSIQEWPTPTNLKEVQSFLGLVNFYRKFIKYYG
>RT_Cico1#RLC+NA
QEEALELAKAAELQSWKQNKVYEEVPNIGQKCISVRWVCTVKDHECGPKPKARLVARGFE
ERNTQDLDKDSPTCSTDALRVTITIIEHNNWKLNSIDVKTAFLQGELLDRNIFVKPPAAA
KVSKDVIWKLKKCVYGLADASKSWYKRVQSFLISIGAQITKVDQSVFYWHFKGKLQGVVA
LYVDDILWGGTAIFEESVIQLLRNQFTIGKESSEKFKYIGLEVKQSMNHTEICQDDYIKN
VTQIVI
>RT_Cigr-1#RLG+NA
LEEEIIEPSNSPWRAQVLVAREGSKKPRMVIDYSQTVNVFTELDAYPLPSIESIVNKVTQ
DKVYSSLDLRSAYHQIPLKDSDRPFTAFEAEGQLYQYKRLPFGVTNGVSAFQRIINRFIQ
DNHLNKVYAYLDDITVTGETLEEHDRNLKKLLVAAKRHNLTINEEKSKLRMTSIDFLGYR
ISYGDARPDPERLRPLLNLPPPDTPRELKRIQGMFAYYAKWISRFS
>RT_Cinful-1#RLG+TAT
LSAGVIREVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATAS
SELMSLLDCYSGYHQIWMKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQ
SQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCL
VSTKGIEANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSA
>RT_Circe#chimeric+NA
VKSIVRLRWMLKRHLHRLGHLQLPCISNQARCDFVSMQENMQSLQTAKSSNLTSKMFRSR
IPCQDCFHRSKAPLSVQKNPFGLSIHKPCAVCTSLYPINNRMYSTSKICWFCQTISKTIF
CICPKRKAGLTINVQKSQFCLKTVDYLGYLVGEGTLQVNPNKIAAVGDFPVPKTKQLRRF
LGMTGWYQRLISNYS
>RT_CLNV+NA
MERLKKIGIIGEDPLKFWERNKVKCKLDIINPNLTIEDKPLKHVTPAMKEQMRKHIDKLL
ELKVIRPSKSRHRTTAMIVQSGTEMVLQKDKNGKEKMVEKRGKERLVFNYKRLNDNTEKD
QYSLPGINTIIQRIGRSKIYSKFDLKSGFHQVAMDPASIEWTAFWAIDGLYEWLVMPFGL
KNAPATFQRKMDMCFAGTEHFIAVYIDDILVFSETEEDHVKHLHQMLHICEKEGLVLSPT
KMKIGATSIDFLGATIGRSKIRLQPHIIKKITEAKEEELQTTKGLRAWLGILNYARSYIP
NLGKTLGPLYSKVSPTGEKRM
>RT_CmYLCV#Pararetrovirus+NA
VSSTLEEVCDENPLDVKNTNTELVKIELINPEKEVNVPNNIPYSLRDINEFSQECADLVR
KGIIEESKSPHSAPAFYVENHNEIKRKKRRMVINYKALNKATIGNAHKLPRIDSILTKVK
GSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWNVLPFGLKQAPGIYQNFMDKN
LEGLENFCLAYIDDILVFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLG
LTLQENGEIKLQPNVLEKLELFPDAIEDRKQLQRFLGCLNYIADKGFLKEIAKETKNLYP
KVSITNPWHW
>RT_CoDi2.4#RLC+CODI-A
NYKGWQDAESIERAQLHEYETFVDIGKATTLGKHVTNAPKGYKKIRVHTVYDVKHDGRHK
ARMVAGGHLTPVPTESVYSGVVSLRSLRIVVFLAELNGLKLWGADIGNAYLEAKTKEKVF
IVAGPEFAELEGHILVINKALYGLRSSGLRWHERFADTLRDLGFTASKADSGVWMRENSG
VYEYIAVYVDDIAVAAQDPEGIIRQLKEKYKYKLKGVGPLQYHLGCTFERDKDGTLSYHP
RKYISRMMEQYER
>RT_CoDi3.1#RLC+CODI-A
FDDGWRDAIRKEMDTLESMKTFTIKDKGERAPSDYKRIPMWIIFDVKMDFRRKARLVAGG
HVTDPPDEDTYSSVASRESVRLGFLLASLNNLDLVSVDIGNAYVNADCREKVFSIAGPEF
GEHEGKVVLIAKALYGLKSSGAAWHSHLAQNLRFLGFVSSKADPDMWFRKAQRLDKTEYY
EYIISYVDDLTIVSADTKAILKALENIPYTLKGGSAPRTFLGATTGVHTFNDGTKAWYMS
AKQYLTNAILNIEQ
>RT_CoDi4.1#RLC+CODI-A
LPDGWRDGIAKEMKNVMPAFEFRDDDRMPVGHKEITCHMIFDIKAFSLQRKARLVAGGHT
TDPPKDMTFASVVSRDSVRIAFLLAALNDLDILAADVQNAYLNAATKEKVWTRAGKEFGS
NAGRPVVIVRALYGLKSSGARWRDHMAATLREADYTSSRADPDVWMRPATKPDGFKYWEY
VLVYSDDILVVSHDPKRTMDFLESKNTLKNGTVAEP
>RT_CoDi4.3#RLC+CODI-A
FPDGWLDAIRKEMKNVMPAFKVLEPNASKPVGYTWIPCHMIFDIKMDFTRKARFVAGGHV
TDPPSSITYASVVSRDSVRIALLIAALNSMQILGADAQNAYLNAPVREKVYTTCGPEFGN
STEGRYAIIVRALYGLKSSGAAWRAHLAATMEELMFTSCIADPDVWLRPFQNEGGLKFYE
YVLIYTDDFLCISHDPKSILDTIGKHFKLKPESIKTPDTYLGANLGHFSLPDKPDKPRWS
MSSTNYVKQAVANVEK
>RT_CoDi4.4#RLC+CODI-A
FPDGWKRAIEKEMANVMPAFKFLEGDENLPVGCQKIDCHIIFDVKLDLTRKARYVAGGHM
TEAPAALTYSSVVSRESVRIAFMAAALNGLDILAADAQNAYLNADCRESVYTIAGPEFGA
ARQGLRVLIVRALYGLKSSGAAWHAHLAQTMSDLKFRPCVADPDVWLRPAVKGNGDKYYE
YVLIYVDDILAVSEKPDRIMETLSSLYKFKEDPKTRKKYGPPDRYLGANVGKYKLPGATK
EHWYMSSDDYVKAAVTNVEN
>RT_CoDi4.5#RLC+CODI-A
FPDGWGDAIKKEMQNVRIAFDILPDGTTAPIGYQHVRCHMIFDVKMEDFRRKARLVAGGH
TTEAPPTLTYASVVSRETVRIALTMAALHGLPIMAADVMNAYVTAPNKEKIWTTLGPEFG
SDCGKKAIIVRALYGLKSAGAAFRSHLGECMRNLGYKPCLADPDLWMKPEYDPSDSFKYW
SYILCYVDDILVIHHQPEDVIKKIDKYFPLKPGSVGKPDMYLGTKLREITFTNGEKAWAM
SPSKYVQESVSNCIK
>RT_CoDi5.1#RLC+CODI-B
APDWIRAAANEIGRLTQGNPPHSTTGSQTMHFIAHNAIPPGRKATYLRIVASIRPQKSEP
KRIRFTVGGNLVQYPGKVSTPTADITTAKILFNSVLSTPAAKFMCIDIKDFYLGTPMARY
EYMRIPVPDIPPTIMAHYQLAPLIHNNSITVEIRKGMYGLPQAGILAHDRLVEHLAAHGY
IKTKHTAGLFRHVTRPIQFTLVVDDFGVKYTGTEHAQHLIDTLQALYTITIDWDGTRYLG
LTLAWDYERRTLDMSMPDYIDQALTRFQR
>RT_CoDi5.2#RLC+CODI-B
GAEWIQAAANEMGRLSQGVQPHMPTGTNTIHFIPHTEKPHDRKATYLKIVAAIKPHKAEK
YRIRFTVGGDRIEYSGPTSTPTAALPAIKILVNSVISTDGAHFMTCDLKDFYLGTPLPVY
KYMRIPAKHIPACIMEQYKLAPLVHNDNVLVEIRKGMYGLPHAGRIANDRLLQHLALDGY
HQAKHTPGFFTHESRPISFSLVVDDFGVKYVGKEHAEHLVQCLEKLYTVTTDWTGSLYCG
LTFTWDYNARHVDMAMPGYIEKALQQFQH
>RT_CoDi5.3#RLC+CODI-B
GPEWIQAAANEMGRLSQGVKPNMPTGTDTMHFIPHTAKPHDRKATYLKIVAAIKPHKAEK
YRIRFTVGGDRIEYNGPTSTPTAALPAIKILVNSVISTKGARFMTCDLKDFYLGTPLPVY
EYMRIPAVHIPDCIMEQYKLAPLIHKGNVLVEIRKGMYGLPHAGRIVNDRLIDHLALDGY
HQAKHTPGFFTHETRPISFSLVVDDFGVKYVGREHAEHLLHCLEKLYTVTTDWTGALYCG
LTFTWNYEQRHVDMAMPGYVDKALQRFQH
>RT_CoDi5.4#RLC+CODI-B
YKRIWSTSYANELGRLTQGIRDIPGTNTMFYITKSEIPEDRRKDITYGRIVVVVRPQKKE
QERTRLTVGGNLIDYPWEVATPTADLTTAKLLFNSVISTPGAVFVVLDCKNFYLQTPMKR
PEFMRLKLSLIPQEIIDKYKLNDKVDDRGWIYVRIEQGMYGLPQAGRLANELLAKRLDKE
GYYQCQYTPGLWRHKWRPITFSLVVDDFGIKTVGLSHAKHLKNALEKHYEVTTDWKGNLF
CGIKLTWDYKNRTVDLSMPDYIPKALTRFQH
>RT_CoDi5.5#RLC+CODI-B
YQKEWNTSCANEIGRLAQGIGKRIDGTNTMFFINKQDIPNDRFKDITYAKFVCDYRPGKS
EPNRTRLTMGGDRINYPGEVGTPTADLLLVKILFNSIISTHGARCMTADIKNFYLNTPMQ
RYEYLRIRLSDIPQEVITEYGLLNKVAADGYVYLEVRKGMYGLPQAGLLAQELLEKRLAE
HGYFQSKIIPGLWKHVTRPVCFTLVVDDFCVKYIGKQHAEHLMGVLKQHYEITEDWKGEK
YCGLTIDWDYNNKKVHLSMPGYVNKALKRFGH
>RT_CoDi5.6#RLC+CODI-B
TAEIWTKAFGKEIGSLAQGDDLTGTKGTDTIVFLDRIGIKNIPKDRVITYARIVVDYRPQ
KEDPNRVRITAGGNLINYPGELTTRTADLTTAKLMWNSVISTDNARYACYDVKNFYLGTP
LDRYEYMRIPLHLIPQHIIDQYDLTNKALNGFVYVEIRKGIYGLPQAGMLANKLLKERLA
PHGYLEVRDTPGLFIHKTRPIMFTLVVDDFGVKYVGKEHADHLVSVLKRYYTLSEDWTGS
LYCGVSLKWNYKERWVDISMPGYIKNALQRYNH
>RT_CoDi6.1#RLC+CODI-C
VLNLFVKAVVKEVNGHIENNHWQLVPRSEVPPDAEVVPSVWAMRRKRNLTTNEITKYKAR
LNMHGGKQTYGVNYYETFAPVVSWFGIRLLVVFAIVFKWSLRQVDFVMAYTQAPIEMDMY
MELPAGLSTKHGDSKSHVLKLLANLYGQKQAGRVWNEYLVGKLRSIGFEQSKVDDCIFYR
GDVVFIVYVDDGMFLGRCDRQLTSIIKELVGLGLDIEDQGHPADYVGVNIRKLQDGSYEF
TQRAIIDSVIADVGL
>RT_CoDi6.2#RLC+CODI-D
VYNPWRAAIMKEWNDMKKRNVWIVQKRCDMPKDRRCVKSKWVFKLKRNGVFRARIVACGY
SQIPGVDFEESYSPVMNDITLRILLVIWIVMTLKAIIADVETAFLYGKLLEVIFMECPPG
MMGTTKDDVLRLLMCIYGLVQAAARYYAYMAKTLRSMGFKGGDVDPCLFVKWINGRVCFV
GLYVDDNLIIGHPELVDDTIKQLRQKGLILKISDLDDYLSCHIVLSKDKRRAWLGQPHLI
ASIVNKFGR
>RT_CoDi6.3#RLC+CODI-D
VYNPWREAIRKEFRDMVKRKVWRRVKKSSIPSNRRCVKSKWVFKIKRNGVFRARLVACGY
SQIPGVDFSESYSPVANDITIRLLLVAMILFGLSAKIVDVETAFLYGELEEEVYMENPEG
LEDSNDDEALLLLTTIYGLVQAARQYYKKARGILRKIGFTGGDVDPCLFVKKSSLGIVFI
ALYVDDNLLVGHPKAIECAIEQMKRHGLILKVEDDLKDYLSCEIQFSKDKTKAWLGQPHL
ISNLMSKFGN
>RT_CoDi6.4#RLC+CODI-D
FLNIWKQSAAKEMESIRDRNVLGGLIKLSSLPTGTRVLGTRWIFKWKQDGFDHDKYTEKA
RLVVKGYEQISGVDYTESYSPVANETTVNLGIALGLYYKHVLKQDWIEHVIDVETAFLHA
ERLNSDKKTYIKVPSGFEELTGIKTGTDDVIELTGVLYGEVDAPLAWAITFKKILTKIGF
KQSLIDPCLYIMQDKKMTLEVLMMVHVDDCKITGSREKVMWIKKEIKKHVPIKDLGELRK
FLGVNYKAGTDKIGPYIGVDMTEYVEEIIRDYEL
>RT_CoDi6.5#RLC+CODI-D
LYNPWLPSAVNEIMNFISRGSWKKVPRSQARKSGKTILPTKWVFKKKDEQDGTTRYKSRI
VTKGFMQIPGVDYSESFSPVANDTSVRIGIAKTLANNDWVIEVIDIEAAFLEGQLDRDTY
IEWPEGMVKLGFITADESERACIQLTKSMYGNVDAARRFYIEYKKHLTGVPMGMESSEVD
PCVFYRKRGNKVCLVAMTHVDDTILFGPKQEIEWFKVGVKKRFNYSDLGKLKKHLGVWYE
WKENNSEERHLIGSMPKLVKEIIESFER
>RT_CoDi6.6#RLC+CODI-C
ESQLWKEAMNKELQQLHDKGTYEIVAKDTVQGKIIPTTWVFKRKRLPDGTIYKYKARLCI
RGDLQAPQLDRNDTYAPVASWDTIRLMFSLCVQHGIKSRQIDFANAFVQADRDEPIYLSL
PPGFSQTSSTHCMKVTKSLYGDARAPRMWYDHLTTALVALGFTPSPIDPCLFLRKDCIFL
FWVDDAIICSHDDSTIVSVIDDLRQRNFNIDNDTGVGSMENYLGIKLAPDNSISGSIHLT
QPHLISRIVDSTCR
>RT_CoDi6.7#RLC+CODI-C
VLDIFLKAMQEEVQAHTENKLWELYPRRLVPQGTPIIPAVWSMKRKRRISTREVYKWKAR
LAFDGSKQIHGVNFWETYAPVASWPTIRYILTLALINRWHMQQIDFVLAYTQAEAECEMF
MKIPKGFTVEHDNSEEYVLRIKKNYYGLKQAGRVWNQHLVSKLQECGFKQSEHDQCLFYR
GRSVYVLYTDDSILAGPDLEELEQIKIDMANSGLKLTSEPGVSDFLGVKIDRKGDEIHLT
QPHLINSILDDLRL
>RT_CoDi7.1#RLC+CODI-A
EINDWQDAIKLEITSLIDLECFEFKPSDFSPGNEFQKTTLMTVFDVKQDLRRKARLVAGG
HLVDALDHDIYSSTVKGISVKLLHVIAHKANLKQLCGDVANAYVNAYTNEKVYAKAGPEF
GSDLVGSIVIIRKALYGLRSSSERWHAHFADTLRALQFKQSRYDKDVWIRLGNESLFYEY
VCTHVDDFMIVSKTPEKIMESIKAIYSVKSVGPPDYYLGNDYKKDRKGRWCIGCKKYLVE
AIKRVEN
>RT_ComYMV#Pararetrovirus+NA
LKEMKEMKYIGENPMEFWKNNKIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLL
QMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGI
NTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIF
QRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTP
EIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYIQDIGKLVQ
PLRQKMAPTGDKRM
>RT_Copia#RLC+COPIA
PNSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARG
FTQKYQIDYEETFAPVARISSFRFILSLAIQYNLKVHQMDVKTAFLNGSLKEEIYMRLPQ
GISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKDNINENI
YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMHEDKIYLSQSAY
VKKILSKFNM
>RT_CRM#RLG+CRM
LDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGA
IVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRA
FIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVV
TPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFS
>RT_CsRN1#?+NA
LELDIIRTSSSHWSSPLHMVPKKSKGDWRPCGDYRSLNNATIPDRYPIPHIHDFASTSCH
TNIFSKLDLVRAYYHIPIAPDDIPKTAIATPFGLFEFTRMPFDLRNAAQTFQRFMDEVLR
GLPFVYAYLDDVLIASTSPMEHAAHLRAVFERLSTYNIRLNIDKCLFGATNLDFLGHHID
STGISPLPDRILALESFPIPTTLTQLRRFIGIINYYRRFIPHCA
>RT_CSSV+NA
MVQLQDQGFIGENPMQHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHIKALL
DIGVIRPSKSKHRTTAFIVESGTVIDPVTKKTIHGKERLVFNYKRLNDNTEKDQYSLPGI
QTILKRVGNKKVFSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVF
QRKMDQCFKGTEEFIAVYIDDILVFSENMAEHTKHIGIMLKICQENGLVLSPSKICLAQR
EIEFLGTVISQGQMKLQAHVIKKIVNKANIELETTKGLRSFLGLLNYARIYIPNLGRKLS
PLYAKTSPTGEKRF
>RT_CSVMV#lentivirus+NA
ILGTDIYGENPLEKWEKHKTLAKIELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGF
IEEKTNFEDKKYSSPAFIVNKHSEQKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRS
IQARYYSKFDCKSGFYHIKLEEDSKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRI
FRPYYDFIIVYIDDILVFSKTIEEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGV
QIEQGGIELQPHIINKILEKHTKIKNKTELQSILGLLNQIRHFIPHLAQILLPIQKKLKI
KDEEIW
>RT_Cubel#BelPao+NA
MKQYFMLDSLGTQIPSKPLLSKDDERAVDMLKKRTILDGERYRTGLLWKFDDVKLPDSRP
MALNRLRCLEKRMIREPELATALQAKIEDYEQKGYIRKLTDAEERADRDRVWYLPIFVVT
NPNKPGKLRIVWDAAAEVRGISLNSVLLKGPDQVTSLVDVLLRFREYRTAVTGDIKEMFH
QVRVHLDDQHCQRFLWNNGAPGSTPSVYVMQVMTFGASCSPSCAQFVKNINAERFAEDSP
AAAKAIINDHYVDDMLSSVETEQEAIKLASSVRDIHGQGGFEIRGWRSNSKAVLAALNSQ
ECEDKNLSEASQFSTEKVLGMWWDSSTDTFTFRLPTKPDKDLLNGLRVPTKKEVVRVLMS
IFDPLGLLANVLMFLKVLIQEIW
>RT_Cyclops-2#RLG+ATHILA
LDARMIYPISDSPWVSPVHVVPKKGGNTVIRNDKDELIPTKVATGWRMCIEYRRLNTATR
KDHFPLPFMDQMLERLSGQQYYCFLDGYSGYNQIAVDPADHKTAFTCPFGVFAYRKMSFG
LCNAPTTFQRCVQAIFADLNEKTMEVFMDDFSVFGVSFSLCLANLKTVLERCVKTNLVLN
WKCHFMVTEGIVLGHKVSSRGLEVDRAKVEVIEKLPPPVNVKGIRSFLGHVGFYRHFIKE
FS
>RT_CYMV#Pararetrovirus+NA
IQELKAQGYIGEEPMKYWAKNRVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRRHVEALL
KIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGI
QTILQRLKGSTIFSKFDLKSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVF
QRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQA
EIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLS
PLYAKVSPTGERRV
>RT_Dane-1#RLG+MAGGY
LRKGFIRPSSSPTASPVLFVKKPGGGLCFCVDYQRLNWILVKDQYPLPLVKETLNNLKGM
RYFTKIDIISAFNNIRIKKGQEYLTAFRTCLGLYESLVMPFGLTGAPATFQHYINDTLRD
YLDIFCTAYLDNILIYSQTRSEHIQHVRKVLQKLREAGLFAKLVKYEFTVHETKFLGLIV
ARDRIKIDPEKVQTIAAWATPTCITDIQAFIRFANFYRRFIKDFS
>RT_DBV+NA
FQELKAAGYIGDDPLKFWSKNQVVCELNIINPDLTIQDKPLKHVTPAMEETFRKHIDALL
KLKVIRASKSRHRTTAFIVYSGTTVDPVTGKENKGKERMVFNYKRLNDNTEKDQYSLPGI
NTILKRVGQSKIYSKFDLKSGFHQVAMAPQSVEWTAFLAPGGLYEWLVMPFGLKNAPAVF
QRKMDNVFRGTEEFIAVYIDDILVFSETEEEHLKHLRILLQICQQHGLVLSPTKMKIGTK
TIEFLGAVIGNRKIKLQEHIIKKIADFSDDELKTTKGLRSWLGILNYARAYMPNMGRILG
PLYSKVSPNGEKRL
>RT_Del#RLG+DEL
LNKGFIRGSTSPWGAHVLFDPKKDDSKRMCIDYKLNSVTVKNKYPLPRIDDLFDQLNGAY
FSKIDLRFRYHQLRIRADIPKTAFRTRYGHYEFLVMPFGLTNVPTAFMNLMNRVFREYLD
KFIVVFVDYVLIYSRTQKDHEHHLRISLQLLRNNQLYAKLSKCEFWMEKVKFLGHVVSRE
GIVVDPVKVKAVMNWELPKNIFEIRSFLGLAGYYRRFIKGFA
>RT_Diaspora#RLG+Athila
LQAGIIYPISDSQWVSPVQVVPKKTGLTVIKNEKEELIPTRVQNNWRVCIHYRRLNQVTK
KDHFPLPFIDQILECLAGKSHYCFLDGFSGYMQITIALEDQEKTTFTCLFGTFAYRRMSF
GLCNAPGTFQRCMISIFSDFLENCIEEFMDDFTVYGSSFDGCLDSLEKVLNRRIETNLVL
NFEKCHFMVEQGIVLGHIISNKGIEVDPAKISVISQLPYPSCVEVRSFLGHAGFYRCFIR
DFS
>RT_DrFV-1#retrovirus+NA
KRKGIIKEVDNAPTNSPIQAVAKPDGGWRLVTNYKALNKQTVPDTRYLINARDATGAAPE
GRLLSKIDLANGFWSVPLKPESRARTAFTFENKQYVYNVLPQGFKNSPNAFQAIMMEILK
GLPVVVYIDDILIVTNDEEEHLKILDETLSRLTKEGFRLNYKKMEIAKDDVEFLGFQITG
NERFLSQTTENKLKELRGKEITSLKQLQSMLGTLNFVRDLIPGYA
>RT_DRM#RLG+A_CLADE
VDAELDRLEKAGIITPVKYSEWAAPIVPVVKKDKTLRLCGDYKLTVNQAVTTEIYPLPRI
EELMATLSGGTIFSKIDLASAYQQVLLEDESKELLTINTHRGLFVYNRLPFGVSSAPSIF
QRIMENLMRDLDVIVYLDDLLVTGKTEQEHLQRLQAVLKRLQENGLRVKKSKCEFGKSQI
EYLGFVLNSQGLHPSPDKVDAVKNAPVPTCVKELKAFLGLVNYYGRFLPNQS
>RT_DrMV#Pararetrovirus+NA
VQRLLQQNISDDPLKFWAKNKVTCQLEIINPDLTIQDKPLKHVTPLMEQQFKRHVEALLQ
LKVIRPSKSRHRTMAMIGNSGTSVDPTTGKEVKGKERMVFNYRSLNDNTHKDQYSLPGIN
TIIQKIGRATVYSKFDLKSGFHQVAMSPESIEWTAFIVLGGLYEWLVMPFGLKNAPAVFQ
RKMDHCFAGTEKFIAVYIDDILIFSANDEEHVEHLKVFCAIVEKHGLILSSNKMQLGKRE
IDFLGATLGNRKIKLQAHIIKKIAAFPEAQLAEKKGLRSWLGILNYARSYIPRLGILLGP
LYQKTSPHGDKRM
>RT_EFV#retrovirus+NA
LKQGVLKQQTSPMNTPVYPVPKPDGRWRMVLDYRAVNKVTPAIATQNCHSASLLNTLYRG
QYKTTLDLANGFWAHPIQESDQWITSFTWNGKSYVWTTLPQGFLNSPALFTADVVDLLKD
IPNVEVYVDDVYFSNDTEEEHLKTMDLLFQKLQTAGYIVSLKKSKLGQHTVDFLGFQITQ
TGRGLTDSYKSKLLDITPPNTLKQLQSILGLLNFARNFIPNYS
>RT_EIAV#lentivirus+NA
LSEGKISEASDNNPYNSPIFVIKKRSSKWRLLQDLRELNKTVQVGTEISRGLPHPGGLIK
CKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQK
TLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILLEKGFETPDDKLQ
EVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLT
>RT_Endovir1-1#RLC+SIRE
KEALWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQ
GYTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQP
KGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHGI
IIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQST
YAQNLVKRFGM
>RT_EVCV#Pararetrovirus+NA
IEELLELACSENPLDPEKSKGLLTASIKLIDPNKIIRVKPIPYPPNIRQEFDIQIKELLA
MNLIVPSKSPHMSPAFMVNKGAEQRRGKMRMVVNYKALNDATIGDAHNIPNRDSLMALIS
GKRIFSSFDCKSGFWQVLLDKPSQELTAFTCPQGHYQWLVMPFGLKQAPAIFQRHMQIAL
NEHSAYSCVYIDDILVFSENEKDHEIHVSKVLNRCINLGIILSKKKSQLFKETIDFLGIS
IDKGTHSPKPHILENIHNFPERFKDVNQCRKFLGIITYAMRYIPELSRKRMFLQDKLKKN
VPWTW
>RT_FeLV#retrovirus+NA
LDQGILKPCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPP
SHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDE
ALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQI
CLQEVTYLGYSLKDGQRWLTKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGFA
>RT_FFV#retrovirus+NA
LKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLFKG
RYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQG
IPNVEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITN
EGRGLTDTFKEKLENITAPTTLKQLQSILGLLNFARNFIPDFT
>RT_FIV#retrovirus+NA
EREGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQM
KKQITVLDIGDAYFTNPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQS
TLDNIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEKVEELRKLLLWWGFETPEDKLQ
EEPPYKWMGYELHPLTWTIQQKQLEIPEKPTLNELQKLAGKINWASQTIPELS
>RT_FMV#Pararetrovirus+NA
IEQLLDKVCSENPIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLD
LGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLR
GKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTAL
NGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLE
IDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKD
VTWNW
>RT_Fourf#RLC+TORK
FLIIWKEAVRSEMESIMSNGTWEVVDRPYGCQPIGCKWIFKKKLRPDGTIERYKARLVAK
GYTQKEGEDFFDTYSPVARLTTIRTLIAVAASYGLIIHQMDVKTAFLNGELDEEIYMDQP
EGFIADGQENKVCRLIKSLYGLKQAPKQWHEKFDNTLTAAGFVVNESDTCVYYRYGGGES
VMLCLYVDDILIFGSNLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVTLLQS
HYVEKVLSRFGF
>RT_Gabel#BelPao+NA
FIDWWKWESIGAGCVPRCGGCRCGNCQPGGKEMTLAEERELEVVKSGLTYVAADDHSERP
HWHTKYPWVEDPATLPSNRSAVEATFLRTERQLAREPEWKAAYAAQVHEMVERRAAMKLT
KDVLREWTGPVWYISHLIAPNPHSVTTPVRLVWNSSQKCRGVSLNDLLLKGPDVLNSIRA
VLLKFRRGGFAALGDVKKMYNSVWLEDQEVHLHRFLWRDSEEEELAEYAVTRVNIGDKPA
GCIAQLAMRETANLPQFSHLEEERRVLQEDSYVDDLLTSHDNLDQLKVITGNVEQILKAG
GFELKPWVFTGQSRRESSGNDQAVTPRTVILPNQLKEEDNKALGLGYTLEDDKLHVMVGI
NFSRRKRKMRLGQDLRLEQVRAQTPDPLTQRELLSQVSGLYDPIGLTTPVKQKGAILVRR
AF
>RT_Galadriel#RLG+GALADRIEL
LDAGLIQPSKAPYGAPVLFQKKQDGTMRMCVDYRALNKATIKNKYSVPLVQDLMDRLSKA
CWFTKLDLRAGYWQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFCNLMNNVLFD
YLDDFVVVYLDDIVIYSRTLEEHVNHLSLVLSQLRKYTLYVKMEKCEFAQQEIKFLGHLV
SKNQVRMDPKKVQAIVDWQAPRHVKDLRSFLGLANYYRKFIAGYS
>RT_GalEa1#RLC+NA
TELLVLRAKEKEITNWKDNKVYKEVEDVGQRALSVRWVVTEKVKDGQTVVKARLVARGFE
EETGNLRKDSPTCSKEAVRLALSVAATCGWVCYSLDVKAAYLQGDQIDRDVYLCPPPEFN
DGSLWKLKRTVYGLCDAARHWYLRVRSQLLDLGAIASSLDPVLFSWRCGRNLEGVICVYV
DDLIWAGTNSFKEQVIDRLSQIFRMGNSESKAFKYVGLNIVSYSDGSITLDQNQYAATLT
PISI
>RT_GALV#virus+NA
LDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPP
SYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDE
ALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQL
CQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFA
>RT_Gimli#RLG+REINA
LESGIIQPSSSSFASPVVLVKKKDGSWRLCVDYRKVNGITVKNCFPIPLIEDLMDELGGA
VIFSKFDLRAGYHQVRMVEKDIPKTAFKTHSGHFEYLVMPFGLTNALATFQGLMNSVFQK
FLRKFVLVFFDDILIYSKSKKEHLQHLKLVLEVMREHKLFAKRSNCAFATSRVEYLGHFI
DRDGLSTDPSKVLAVKEWPAPTNLKQLRGFLGLANYYRRFVKNFG
>RT_Gloin#RLG+REINA
LQCGIIRPSKSPFSSLVLLVKKKDGSWRFCVDYRALNRVTVLDKFPIPMIDELLDELHGT
TIFSKLDLCLGYHQIRMREDDIEKTAFRTHDGHFEFLVMPFGLTNAPASFQSLMNELFGP
FLGKFVLVFFDDILIYSNNLTNHVKHLTLVMEVLAKHQLFANRKKCLLRQSQIDYLGHVI
SAHGVATDPSKTEAMIHWPTPKSVKELFGFLGYYRHFVKGYG
>RT_Grande1-4#RLG+TAT
VAAGFIREVLHPEWLPTLFLYSKRIKWIGACASTILISTNTVRRDPFGLPRIDQVVDSTA
GCSMLSFLDCYSWYHQISLAKEDEEKTAFITPFGAFCYTSMSFGLKNGRATYQRAIQTCL
ANHWGKRVEAYVDDVVIKIENSENFIEDLQLVFNSLRRYRWKLNPEKCVFGVPAGKLLGF
IVSHRGIEANPDKIEAIMKMEAPRSQKKVQRLTGCMAALSRFISRLG
>RT_Grasshopper#RLG+PIGGY
MDKGWIRASSSSAAAPVLMVRKASGGWRLCVDYRALNSITMQDRYPLPLIKETIRSLTGA
RWFTKVDVRAAFHKLRIAEGDEHLTAFRTRFGLFEWLVCPFGLAGAPATFQRYVNGVLGD
TLGDYASAYLDDILIYSSGSKSDHWSKVTRVLDKLAAAGLNLDLDKSAFAVKEVKYLGFI
VKAGEGVQADPEKIKAIRDWEAPTRLRGLRGFLGFANFYRDFIDGYA
>RT_G-Rhodo#RLG+NA
YSHGLARDSLSEYASPVTLAPKPDGTWRFCTDYRALNSITQEAKFPLPRIDDSLDQLRGA
RYFSKIDLRSGYWQVRIEEKDIHKTAFRTPFGHHEWLVMPFGLQGAPSTFQRMMNHYLRQ
YLGDFVICYLDDVLIYSKTKEDHLEHIRKVLEILRKHKLYAKASKCDFGRTQVQYLGFIV
RQGQVDKDPKKIEAIRDWPLPSTVREVRSFLGLAGFYRKFVEGFA
>RT_Gulliver#RLG+B_CLADE
LERLYMNVISPVSYSVATPLVFIKKADGKLRVCGDFSTGLNKALQDHLYPLPIPEDLFTI
LNGCVVFSKIDFSDAYFQVEVAEESRLLLTVNTHRGLFQYNRLPFGVKCAPAIFQQIMDT
MLADLPFSMAYMDDIIVTSKNEKEHYAHSQKVFRRLSEYGFCMKLEKCSFFMSSIKYLGI
IIDLNGGRPNPEKVNAVVHMSIPSNVQKPSILGMINYYNSLCLTCT
>RT_Gypsy#RLGvir+NA
LDDGIIRPSRSPYNSPTWVVDKKGTDSYGNPKKRLVIDFRKLNEKTIPDRYPMPRIPMIL
ANLGKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAI
DDILREHIGKICFVYVDDVIIFSKNETEHLQHINIVLKCLIDANMRVGPEKTRFFKESIE
FLGFIVTKDGATSDPKKVKAIQEFPEPKNVYSVRSFLGLANYYRVFIKDGA
>RT_HERV-E#retrovirus+NA
RTFRIIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRLVNQATVTLHPTVPNLYTLLGLLPA
EDSWFTCLDLKDAFFSIRLAPERQKLFAFQWEDPESGVTTQYTWTQLPQRFKNSPTIFGE
ALARDLQKFPTRDLGCVLLQYVDDLLLGHPTAVGWPREQMLYSGTWRTVGIRCPRKKAQI
CRQQVCYLGFTIQQGEHSLGSERKQVICNLPEPKTRRQVREFLGAVGFCRLWIPNFA
>RT_HERV-K10#retrovirus+NA
LEKGHIEPSFSPWNSPVFVIQKKSGKWHTLTDLRAVNAVIQPMGPLQPGLPSPAMIPKDW
PLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV
GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTST
PFHYLGMQIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTLGIPT
>RT_HFV#retrovirus+NA
LKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQ
KYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKE
IPNVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK
EGRGLTDTFKTKLLNITPPKDLKQLQSILGLLNFARNFIPNFA
>RT_HIV-1#retrovirus+NA
EEEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQ
SSMTKILEPFRIKNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKH
QKEPPFLWMGYELHPDRWTVQPIDLPEKDSWTVNDIQKLVGKLNWASQIYAGIK
>RT_HIV-2#retrovirus+NA
EKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLA
KKRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQ
HTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKF
QKDPPIHWMGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK
>RT_HMS-Beagle#retrovirus+NA
LHDGIIRPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINEVLA
QLGDNKIFSVLDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLPFGLKNAPSIFQRALD
DILHEHIGKICFIYIDDIIIFSKDDETHYQNLDTIFRTLQQANMKCQLDKCEFMKRKVEF
LGFVVSDKGIETSPTKVQAISDFPIPRTLKELRSFLGLSGYYRRFIPNYA
>RT_Hopscotch#RLC+NA
KASHHQLGGDTSPGPHHDAAGSSAAPEVIAATEQGDINARPKTRLQSGIRKKKIYTDGTV
KYGCFTSSGEPQNLAEALGDRNWKEAMDKEYYALMKNETWHLVPPKKGINIIDCKWVYKI
KRKADGSLDRYKGRLVAKGFKQRYGIDYEDTFSPVVKAATIRTVLSLVASKDTSLFFYDK
NGVTMFMLVYVDDIIVSSSSEKATSALLQDLNQEFALKDLGDLHFFLGIEVKKVNDGLVL
TQEKYASDVLRRVGM
>RT_HTLV-1#retrovirus+NA
LEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLPTTL
AHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQ
LAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASLISHGLPVSENKTQQT
PGTIKFLGQIISPNHLTYDAVPKVPIRSRWALPELQALLGEIQWSKGTPTLR
>RT_HTLV-2#retrovirus+NA
LEAGHIEPYSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPDLTSLPTAL
PHLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQ
LAAVLNPMRKMFPTSTIVQYMDDILLASPTNEELQQLSQLTLQALTTHGLPISQEKTQQT
PGQIRFLGQVISPNHITYESTPTIPIKSQWTLTELQVILGEIQWVSKGTPILR
>RT_Humnum#RLC+NA
LQEWLAAVQDELLSFEKNSAWELVDVPKDGTIVQCKWVLRKKYDSENKVHYRARLVAKGF
TQKHGVDYTETFSPVVRHTTLRLLFALSVKLDLNVTHLDVKTAFLNGDLEETIYMKLPDC
YNSSSSSDCKVLKLKKAIYGLKQASRAWNKKVDNCLVSNGYKRSKIEPCMYVKDISKCKI
IVTVYVDDFFIFSNDKVETENLKQILSNKFSIKDLGQVKQCLGMNVTFNREKGYVTLSQE
TYVDQLLSKFQL
>RT_Hydra1-1#RLC+HYDRA
VYYPWKNAMDEEIQSLTNNDTFIITELPANKKVVGGRWIYTIKGNNNKIIYKARYVAKGY
NQIQGIDYLETFSPTARMESVRILMQISAQYNLILHQMDVKSAYLHAPIEHEIYVNQPPG
YEKTHNNKQLVWKLNKSLYGLKQSGRNWQNVLSDFLKEIQFIQSNADNCVFVRRSNTEVA
MILVWVDDIIIAVNSNELLIKVKKKLSKRFKMKDLGPLTSFLGIQFKSTSNCVTMNQSDY
LQNVLQKFGF
>RT_Hydra1-2#RLC+HYDRA
IYYPWVKAMEDEISSLQENNTFTLTTLPEGKHAVGGRWVYSIKSNIDETETYKARYVAKG
YSQVLGVDYIETFSPTANITSIRALMQMAAQYDLELHQMDVKTAYLHAPIDCKIYMEQPK
GFEVKSNRGDKLVCKLNKSLYGLKQLGRNWNKILHVYLTENDLIQNLADYCVYSKRSGKD
RVIIIIWVDDLIIAASDNSLLKDVKEMLTSKFKMKDLGKLKHFLGIDFDQSKGTVRVNQK
RYILRILERFNM
>RT_Hydra2-1#RLG+A_CLADE
VNAELDRLISSGIYRPVSHSRWAAPIVPVLKKDGTIRLCGDYKQTVNQAAMCDSYPLPRT
EDLFATLAGGQKFTKLDLAFAYQQLLLDKSSCELLTVNTHRGLFEPTRLQFGVHSASGIF
QREIEKLIGNLPFTKVRVDDILVSGRSDEEHLKNVETVLLILEKAGLKLKENKCVFMSPE
VEYLGFKLTKDGVVPLEDKLNAIRNAPEPKDTTQVKSFLGMINYYHRHLPNLA
>RT_Hydra3-1#BelPao+NA
KDCSVFSTHTLKVETEFINEIPQFNENIKKFWELENSGVEDNIFDHFKSNIYFDNKECRY
TVKLPFKNNHALLSDNYSLCIKHLNVTLNKLKNDSELLNEYNKIIIEQLNSGVIEKVNNY
DSSIGEVHYLPHRPVCRKDKTSTKVRIVFDASSTLSGPSLNDCINAGPSLATPLFFILLR
FRANKYAFIADIEKAFLQIALDKNDRNYLRLIWFDDIYNINNSNLFSSALATYRICRVPF
GVTSSPFLLNATLIYHAERYCLNDNNISSKLLQSLHIDDLISSCVTIEEGILFFNKCKDI
LKEGGFNLRKFESNSSAFEKQINGDNYERQTNTRVLGLKWNKTEDSIIYSFEDLLNVASI
VPTKREVMSFIASIYDPIGLINPVVVTCKNLFQRICVSKLGWNENLYGDLLSTWNLILSD
FKSVFQIAVPRWYMSPGL
>RT_Idefix#retrovirus+NA
IEQGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILD
KLGRCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMN
NLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDKCEFMKKETEF
LGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFA
>RT_Ifg7#RLG+REINA
LEAGIIQPSQSSFSDPVVLVHKKDGSWCMCPDYRELNKLTIKDKFPIPVIDELLDELHGS
IYFTKLDLRSGYHQIRMKTEDIPKTTFRTHEGHYEFFVMPFGLTNTPSTFQGLMNSIFKP
FLRKFVLVFFDDILIYNKSWKDHVEHVDRVLQLLEEKKLYAKRSKCFFVVQEVEYLGHIV
SEGVKVYPNKIKAIKEWKIPTSIKHLRGFLGLTGCYRKFAKNYG
>RT_JSRV#retrovirus+NA
LRLGHIEPSTSAWNSPIFVIKKKSGKWRLLQDLRKVNETMMMHMGALQPGLPTPSAIPDK
SYIIVIDLKDCFYTIPLAPQDCKRFAFSLPSVNFKEPMQRYQWRVLPQGMTNSPTLCQKF
VATAIAPVRQRFPQLYLVHYMDDILLAHTDEHLLYQAFSILKQHLSLNGLVIADEKIQTH
FPYNYLGFSLYPRVYNTQLVKLQTDHLKTLNDFQKLLGDINWIRPYLKLPT
>RT_Kabuki#RLG+NA
QELGICRPSKIAWASPLHIVPKKNGDLRPCGDYRQLNAITKPDRYPIPRRHDFTYILDDK
KIFSKLDINRAFHCIDVAPEDIEKTAIITPFGLFEFPKMTFGLRNAPQTFQRFMNNTVLH
GLEFLFSYLDDVIIASESPTQHNEHLRIVFERFNSYGITINLDKCCFGQPKVEFLGHEVS
VNGITPLKNKVEAIINFPKPETVSDLRRFLGMVNFYRPHLPNSA
>RT_K-HERV#retrovirus+NA
LECGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAIIQPMGPLQSGLPSPAMIPKDW
PLIIIDLKDCFFTIPLAEQDCEKFAFTILAINNKEPATRFQWKVLPQGMLNSPTICQTFV
GRALQPVRDKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDKIQTST
PFHYLGMQIENRKIKPQKIEIRKYTLKTLNDFQKLLGDINWIRPTLGIPT
>RT_Koala#RLC+RETROFIT
DSEPWKQAMDEEYQALVTNKTWHLVPPNKNIIDCKWVYKVKRKQDGTLDRYKARLVAKGF
RQRYGIDYEDTFSPVIKMTTIRIILAIAVSKGWFLRQLDVKNAFLHGILEEEVYMYQPPG
YEDKQHPNYVCKLDKALYGLKQAPRAWFARLSHKLNQLGFQESKADTSLFFYNREGLTVF
LLIYVDDIIVVSSKSEAIPILLQNLQQDFALKDLGNLHYFLGIEVNQSPNGIVLTQAKYA
NDLLRRSGM
>RT_Kobel#BelPao+NA
LEKLYRQSLNYDFPERTVDDRREWSWEDRRFMEVMDSSCKMVNGHYQVDLPLRNPDVKLP
NNRHMAEQRLKGLQAKMNKNSQFKADYIEFMEKVIANGYAEKVPDGVTAKKGKEWYIPHH
GVYHPRKPNKIRVVFDCAAKCDGTSLNDVLLPGPNLMNDLKGVLMRFREFPVAFASDIEC
MFYQVKVPESQRDLLRFLWLPKGDLDQKPKVYRMAVHLFGAVSAPSCANYSLRRTGIDNI
CNAREETVNTLHNNFYMDDGLKSVENVEQAIQLVKELKALCKEGGFNLTKWSSNEREVLR
EIPLDDRAKELMDLDLESSQLPTERTLGVLWNAETDEFQFKCQIKKTEVTRRSMLSEVSS
IYDPLGFIAPLLIPAKSVLQEMC
>RT_Koco#RLC+COPIA
FDEWEEAIKTELNAHDINNTWTIMQKPENKNIVDSRWVFSVKYDELGAPIKYKARLVARG
FTQKYQVDYDETFAPVARIASFRLLLSLAVQYNLKVHHMDVKTAFLNGTLKEEIYMQPPQ
GVACNVGYVCKLNKAIYGLKQAARCWFQVFEQALKECSFVNSPVDRCIYILEKGDIKKNI
YVLLYVDDVVIATGDMEGMINFKSFLNKKFRMTDLDEIRHFIGIRIETYEDKICLSQAAY
VERILNKFNM
>RT_KoRV#retrovirus+NA
LDLGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLSSLPP
SHTWYSVLDLKDAFFCLKLHPNSQPLFAFEWRDPEKGNTGQLTWTRLPQGFKNSPTLFDE
ALHRDLASFRALNPQVVMLQYVDDLLVAAPTYRDCKEGTRRLLQELSKLGYRVSAKKAQL
CREEVTYLGYLLKGGKRWLTPARKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFA
>RT_KTSV#Pararetrovirus+NA
PDLIIEDKPLKHWRQNKVTCKLEIKNPDLIIEDKPLKHVTPKMKEVMARHVTALLQSKVI
RPSTSKHRTTAIIVESGTEVDPITGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIK
RIGTSKVYSKFDLKSGFHQVAMAEESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMD
ECFRGMEEFIAVYVDDILIFSNSVQDHKRHLQRFFEVCTKEGLVLSPTKMKIGVREVDFL
GATIGNSKIKLQPHIITKIIDMRDEEIKETRGLRKWLGILNYARSYIPRLGQTLGPLYSK
VSPNGEKRM
>RT_Legolas#RLG+DEL
LDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGA
QWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRD
FLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVI
SDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA
>RT_LLDAV#Pararetrovirus+NA
IEKLLDQVCSENPLDPLKTKKWMKASIKLIDPKTVVKVKPMRYNPQDVEEFAKQIKELLE
LKIIIPSKSPHQSPAFLVENEAERRRGKKRMVVNYKAINTATIGDAHNLPNKDELLTLIR
GKSIFSSFDCKSGFWQVLLDEDSQLLTAFTCPQGHYQWIVVPFGLKQAPSIFQRHMNNAF
RDFASYCCVYVDDILVFSNNIKDHYAHVAQVLRKCAELGIILSKKKAQLFKCRINFLGLD
IDEGTHRPQNHILEHIHKFPNKIEDKKQLQRFLGILTYASDYIPQLASMRAPLQEKLKED
VPWNW
>RT_LPDV#retrovirus+NA
LKDGRIIPSRSQWNSPIFVIQKKDKSKFRMLHDLRAVNALIKDWGALQPGTPWPGAIPSE
WPVIAMDISDCFFSIPLAERDSERFAFTIPSPNLREPAKRYQWTVLPQGMKNSPYICQQV
VAEVIRPIRERFRDAVIIHYMDDILIAAAEERQTEVIFEAVKTTCHEKGLKINEAKTQRA
PEVSYLGWRVMETGIAPLTVQLPETVTNLVQLQRLLGIIQWLKPILSLRP
>RT_Mabel#BelPao+NA
LDHFWKLELMGIQDKINSDNDEKALQQFKQTITRDKGRYQVCWPWKDSKNKLSDNFGLCL
GRLKSLIRRLQMKPQLLSRYNQTIEEQLNSNIIEKVSSEMNEVGIIHYLPHHEVITPNKT
TTNLRIVYDASAHCKGMKSLNDVLYRGPITLPDLVGVLLRFRTMKNVIIADVEKAFLQIE
LHPTDRNCTRFLWLKDIRSPVNEENVSCYRFQRVPFGIVSSPFLLSATLNYHLETCKSKI
ALELRKNLYVDNIIIPTKGTNEALSNYKEIKIIFNEASMNVREFLSNDQEVNEKLPVQDR
AEVSSIKKILGLNWYHKQDIIQVTLKPWFGKKLTKRIILQFVASQYDPLGFIVPILIRFK
LFLQTLW
>RT_Mag#RLG+A_CLADE
LAAGVIKPVDHSDWATPLVVVRKADGGLRICADYKVTLNKVLAIDRFPVPKMEDLFSNLS
GNKFFTKLDLSQAYNQIVLSERSSEYTVINTHRGLFKYSRLVYGLASSPGIFQKLMVNMF
KNVPNVVVFYDDILIRNQDLDSHLKSIKEVLDILERYGLKIKRSKCEFMVTEVRYLGFII
DQNGVRVDPEKVKSIATMPHPNNVTELKSFIGMVNFYSKFIQDLA
>RT_Maggy#RLG+MAGGY
LKKGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLNNLAGM
KFFSKIDIVSAFNNIRIKKGEEYLTAFRTRFGLYESLVMPFGLTGAPATFQRYINDSLRE
YLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGLYANAAKCEFFVTETKFLGLLV
GVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFA
>RT_marY1#RLG+NA
LASGRIRPSKSPMASPFFFVKKKDGSLRPVQDYRRLNNITVKNRYPLPLISELVNQLHGA
RYFTKLDVRWGYNNVRIKEGDEWKAAFRTNRGLFELLVMFFGLTNSPATFQTMMNDIFHD
LILEGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKLYLHQDKCEFERTKIEYLGLI
ISEGQVEMDPIKVNRVTAWPTPTNKKEVQSFLGFINFYRRFIKDFS
>RT_Max#BelPao+NA
LSKFWEVEDLPVKMVKESDSYCERNFLQTTTKDASGRYVVTLPFRDPENTGSDLGYSRSI
ALAQFLRNENRLKRDFPLKEQYDSVIQEYLDLGHMKEVPPTHNSPSYHLPHHAVVKPEST
TTKLRVVFNASSPSANGISLNDILHAGPVLQSDLTIQVLKWRYFQYVFSADITKMYRQIW
VDPKHTPFQRILFRNKEGDIRDFELKTVTFGVNCAPFLAIRVLQQLAEDIQVPFPNASRI
IQQHMYVDDVLAGANSVNEAQSSIRELQAALSASGFPLRKWTSNNKSVLKDVPAEHLLHS
EFLDIDAESTAKTLGIRWRAKSDEFYFVPPDIVVEASYTKREVLSQIARLFDPAGWLAPF
IIRSKIFMQEIW
>RT_MdEV#retrovirus+NA
LDQGILVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVLDIHPTVPNPYNLLSSLPP
ERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDE
ALHRDLAPFRAQNPQLTLLQYVDDLLIAAASKELCQQGTERLLTELGNLGYRVSAKKAQI
CQTEVIYLGYTLRGGKRWLTEARKKTVMMIPPPTTPRQVREFLGTAGFCRLWIPGFA
>RT_Mdg1#RLG+NA
IKDGIVEQSISEYNSPLLLVPKKSLPNSEEKRWRLVVDYRQINKKLLADKFPLPRIEDIL
DQLGRAKYFSCLDLMSGFHQIELDERSRNITSFSTSTGAYRYTRLPFGLKIAPNSFQRMM
TLAFSGLTPSQAFLYMDDLVVIGCSEKHMLKNLTDVFKLCRQHNLKLHPEKCTFFMKEVT
YLGHKCTDKGILPDDSKYEVIKNYPKPVNADEARRFVAFCNYYRRFIKNFA
>RT_Mdg3#RLG+MICROPIA
LENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEK
TVFTKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFAD
MIRENKVVVYMDDILLATENINEHLETLKEIFKRLVENKLELRIDKCEFMQSSIKYLGFI
INKDGIMPNDKGIEAIKNFPIPNNVHTVQSFLGLCSYFRRFIKDFS
>RT_Melmoth#RLC+RETROFIT
LMDLWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAK
GYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIP
EGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMY
DGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISI
CQRKYALELLQSTGM
>RT_MGLR3#RLG+NA
LQKGFIEPGSTPWAAPILFARKGDGGLRFCVDYRKLNALTKKDVCPLPLIEETLARISKA
RFFTKIDIRQAFHRIRMNPEHRDYTTFRTRYGTFRYNVLPFGLTNGPATFQKFINEILME
YLDDFCSAYMDDILIWSETEEEHQTHVRQVLERLKKAGLQADIKKCEFHVTETRFLGFII
GTKGVAVDPDKVAAVKQWAPPTTVKGVQSFLGFCNFYRKFVPEYS
>RT_Micropia#RLG+MICROPIA
IRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGA
NYFTCLDMASGFHQIPIHPESVEYTAFVPDGLKNAPSVFQRTVINALGDLANSFVIVYMD
DIMVVSPTKELALERLKTVLNVLTKAGFTFNLAKCSFLKTTVQYLGYEVRAGEIRPNVRK
IASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFA
>RT_MiMV#Pararetrovirus+NA
IEQLLEKVCSENPIDPEKSKGWMKAEIKLIKPETVVRVKPMVYSPEDRKEFEIQIKELLD
LKVIIPSKSQHMSPAFLVEKEAEKRRGKKRMVVNYKKLNEVTIGDSHNLPNMQELITLLR
GKNIFSSFDCKSGFWQVLLDDESQKLTAFTCPQGHYQWRVVPFGLKQAPSIFQRHMQDAL
RGLEEFSLVYVDDIIVFSDNKNDHQDHVMKVLRRIESLGIILSKKKANLFKEKINFLGLE
IDRGTHTPQNHILDHIHTFPDRIEDKKQLQRFLGVLTYADSYIPKLAEKRKPLQVKLKKD
QVWIW
>RT_MMTV#retrovirus+NA
LQLGHLEESNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVPKGW
EIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFV
DKAILTVRDKYQDSYIVHYMDDILLAHPSRSIVDEILTSMIQALNKHGLVVSTEKIQKYD
NLKYLGTHIQGDSVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPFLKLTT
>RT_Monkey#RLG+GALADRIEL
LSGGLIRSSKAPFGAPVLFQKKQDGSLRLCVDYRALNKVTVKNKYPIPLIADLFDQLGKA
KYFSKLDLRSGYWQVCIAEGDEAKITCVTRYGAFEFLVMPFGLTNAPATFCTLMNQLFKE
YLDKFVVVYLDDIVVYSQTLEEHVKHLWMIFKVLRENTLFVKREKCYFAQTEILFLGHRI
GDGSIWMDKSKVQVVAEWRTPKKVPELRSFLGFVNYYRRFIAGYS
>RT_Moose#BelPao+NA
LERFWKIEELHVSHFSADEQRCEAYYEQTVSRDETGRYIVKLPKHQQHSTMIGKSETTSL
KRFAGLERKLFANSQLRQQYNEFMLEYIQLGHMVPVSPDNLDAATCCYLPHHPVFKETSS
TTKMRVVFDGSAPTSTGHSLNDALLVGPVIQDDLLSLIIRFRKFQVALVPDLEKMYRQVL
VHPEDRPLQRYGGAYELRTVTYGLAPSSFLATRTLQQLAEDEGDAFPTAKDTLKKQLYMD
DLIAGSNSVDGAIQLREELSALAQRGGFTFRKWCSNSLAVLSDVPAEQLATKSSLRFDDK
ETISTLGICWEPEIDTFQFNISITTKSERDTMRTILSMIAELYDPLGLISPVIITAKVLM
QSLW
>RT_MPMV#retrovirus+NA
LEAGHITESSSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIPQGY
LKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSPTLCQKYV
ATAIHKVRHAWKQMYIIHYMDDILIAGKDGQQVLQCFDQLKQELTAAGLHIAPEKVQLQD
PYTYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPYLKLTT
>RT_Mtanga#RLC+NA
FVDPWKRAMEEEIKSLHENATWEIASLPKDRKAVGSKWVFKRKMDGDGKIVQYKARLVAK
GFSQVYGADYDEVFAPVAKQTTFRTLLSIAARRKLIVKHVDVKSAYLYGDLAETIYMKQP
TGFEIGSKNDVCLLKKSLYGLKQAGRVWNQTITEVLRSLGFHSSEADPCLFVKNKRDRWS
FILLYVDDMLVACSEDREYEDIENTLKRHFKITTLGDVRNYLGIRIERGQNGEYLLDQAS
YIRRIAKRFGQ
>RT_MuERV-L#retrovirus+NA
KDAGVVVPTTSPFNSPIWPVQKTDGSWRMTVDYRKLNQVVTPIAAAVPDVVSLLEQINTS
PGTWYAAIDLANAFFSVPVHKDHQKQIAFSWQGQQYTFTVLPQVYINSPALCHNLVRRDL
DRLDLPQSITLVHYIDDIMLVGPSEQEVATTLDSLVTHMRIRGWEINPTKIQGPSTSVKF
LGVQWCGACRDIPSKVKDKLLHLAPPTTKKEAQRLVGLFGFWRQHIPHLG
>RT_MuLV#retrovirus+NA
LDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPP
SHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLPQGFKNSPTLFDE
ALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLLTLGNLGYRASAKKAQL
CQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFA
>RT_Nabel#BelPao+NA
SSRCLVTSLPFDLERFWRLEEKLDEERTLSKDELYCEEHFITHVKRSKDGRYIVALPFDK
TKGKLGNSKQTALKQLLYLRKRFQRDHEYKREYTKVIEEYLKLGHGFYLPHHGVPKLDSL
TTMLRVVFNASVTPSDGGCSLNDCLLVGPTIQDDLITLLLRFRTHTYVILADIEKMYRQF
LVRDSDRKYQKILWFVNDEIREFVLNTVTFGVAAAPFLAIRCLHQLADDEQERFPLAAKI
LKRDMYVDNMLTGTNSVEEARSICTQMTQVLRTAGMNMRQWAANDPNILSDIESKNLDAN
FDLSNDNTLKTLGIRWRAKTDSFVYKIKPISVTERFTKRKILSEIAKIFDPLGLLGPIIL
FAKKIMQDIWKAKIDWDETVPNDIYYQWNEFCLQLSCLPDMSFNRH
>RT_Ninja#BelPao+NA
VEDYFDMENFGVKTAPPVAASDDVRAQRILEDTTVKVGRRYQTGLLWKDDHVVLPPSYEM
AYRRLVNVEKKMKRNKPLAQEYDRIIKDYVSKGYARRLQPEEVAVRSDRLWYLPHFSVEN
PNKPGKVRLVFDAAAKVGGTSLNSELDKGPQHYKPLPAVLFHFREGAVGVCGDIKEMFHQ
VLIRPEDRCSQRFLWRDGDDERDPDVYEMNVMTFGAACSPSAAHYVKTMNALKYRDSDPR
AVKAITDYHYVDDYVDSFATESEAISVSTRVKEIHKDAGFELCQFSSSSPTVETALGPGR
VKSVGWGEAEEKILGMRWQVATDDFRFNVEYHRVPSSVLSGDRVPTKREYLSLVMSTFDP
LGFLCCLMVTAKLLLREIW
>RT_Nomad#RLG+NA
LQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLA
SLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMID
DILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEF
LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYA
>RT_Ogre#RLG+TAT
WDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQ
SSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGATYQRAMTTLFH
DMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFGVRSGKLLGFI
VSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLT
>RT_Olco1#RLC+
TDLTFDQAKVKEIKNWRDNDVFVEVQDEGQKYISTRWVCTLKETHTGLMPKARLVARGFE
ELQVSELQKDSPTCASESLRLLVAVICQRQWSLNSMDIKAAFLQGAELSRDLYIRPPPEA
DSKGTLWKLKKCVYGLADASLYWYNRVKEIMQTLGGKVSKVDPAVFYWLDEKNTVIGVLA
CHVDDFIWGGTQSFSTTVIPELRSAFQVGLEQHGSFCYVGIDFVSLKEKIQLHQENYIQH
LQPI
>RT_Opie-2#RLC+SIRE
VYVKWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQ
GYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQP
KGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENL
MIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSR
YAKNIVKKFGM
>RT_Oryco1-1#RLC+ORYCO
MEDEIHMIEKNLYNLWIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGS
VQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNG
YLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEP
TLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQ
SDEGIFISQRKYAENILKKFKM
>RT_Oryco1-2#RLC+ORYCO
LYDPWRGAMQDELDAIVDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLAAK
GYVQRQGGGLRRGLHTCRPAGIDWQVHHMDVKSAFLNGKLLEEVYVSQPPGFVDDNHKNK
VYRLHKALYGLRQAPRAWNAKLDSSLLSFGFHRSSSEHGVYTRTRGGRRLTVGVYVNDLI
ITGDHDDEIRSFKGEMMKLFKMSDLGHSDTTSASRLPWTVMGSRWGKLHMPARFLRGQDS
>RT_Osser#RLC+NA
YEEWKQAMDEELASIRANEVWRLEIPPKSVRPLPVKWVFSLKKDEHGEIVRYKARLVAKG
FAQVEGRDYEEVWAPVSKHTTLRALLSVAARDLELHQLDVKTAFLNGELEETVYIQQPPG
YVEGEPYLACKLEKALYGLKQAPRAWYARLRSELEAMNFTVSQADPGLFYRDVLGERVYL
LVYVDDLLLIAAKDINIVRQLKDKLKSILMCVTWVRPVCFLGFEIERNRAERTMKVSQKR
YAKGLVEKYGL
>RT_Osvaldo#retrovirus+NA
LVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVDFRQLNSRSIKDAYPLPRVHHILDQLRE
ARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKGLFQWKVMPFGLHSAPATFQRALDQVI
GPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAANLRINIDKCDFFKKELKYLGH
KVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRFVPDFA
>RT_pCal#RLC+NA
YLHAWIKSMNAELEKFRSKDVYEEVPIPTGVKPISMGWVHTEKIDSLKGVVRKSRCVVHG
NRQKEKLDYDPFSVSSPVIDLVTIRLLTIIGCELGMTIQHLDVESAYLNASITHSNPIYV
FPPKSVPLKKNHCWLLKRSVYGLKQSGLEWYHTIKRVLEDIGFTQVLHNDGLFHIEYEEG
SVIYLGLYVDDILMVGSSQKVIDNFVDQLRDHFEVKVFGEISNYLGIEFRKTESGYILSQ
EKFKK
>RT_pCretro3#RLC+pCRETRO
VDECWKAAMDAEMAQLEANGTWKKGELPPGRKAIGSKWVFAIKRHQDGSIDKYKARLVAQ
GFSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMRQA
PGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHEGKLNM
ALVHVDDTALYGERSILDRFKADVAKHFAITTNGTLSSFVGLQVTRKNGAISILQTRYLE
TILERFGM
>RT_pCretro6#RLC+pCRETRO
YRDAWQEAMQREYDQLTKLGCWDLVDLPAGRKAIGCKWVYRIKRNFSGAIIKYKARLVAQ
GFSQVPGVDYDETYAPVMRPESLHILAAIAVILNLEWDIENAVGAYLNSQLKLTIYMRQP
EGFDDGSGRVCKLNLALYGLKQSGREWNLLLDEFLRGIGFRASSVDPCVYLRIDEGSPTF
LAVHVDDFSLFAKTREIMDKLKGELSSRFEMTDLGPVRQILGYEVIRERDQRTLMLRQAA
YIRKVLDRFNM
>RT_PCSV#Pararetrovirus+NA
VTQLLEAICSQNPLDPQKNRNQIIVHIDLIDPTKEVNVPNRIPYTQKDIDEFREETSKQI
ELGILRQSKSPHSAPAFYVENHNEIKRGKRRLVINYKMNKATKGDAYNLDRLYLTDRESN
WFSTLDAKSGFLQLRLDEETKPLTAFSCPPQMHLEYNVMPMGLKQAPSQFQRFMDNNLRG
LEDISLAYIDDIIVFTKGTKDYHLKQVARVLIQLGNHGVILSKEKAKIAFEEIEFLGLKI
LKNGFIEPQKHLLEKIAEFPDQLQDRKQIQKFLGCLNYIGEKGFFKELAKERKVLQKMLS
EKLPWKW
>RT_Peabody#RLG+DEL
LDKKFIRPSVSPWGAPVLLVKKKEGTMRLCVDYRQLNKVTIKNRYPLPRIDDLMDQLVGA
SVFSKIDLRSGYHQIRVKTEDIQKTAFRTRYGHYEYSVMPSGVTNAPGVFMEYMNRIFHP
YLDKFVVVFIDDILVYSKSEEEHVEHLRVVLGVLREKKLFAKLSKCEFWLEEVSFLGHVI
SRGGVAVDPSKIEAVSKWEAPKSVAEIRSFLGLAGYYRKFIEGFS
>RT_PERV-MSL#retrovirus+NA
IQQGILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLCALPP
QRSWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDE
ALHRDLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQI
CRREVTYLGYSLRDGQRWLTEARKKTVVQIPAPTTAKQMREFLGTAGFCRLWIPGFA
>RT_Poco#RLC+ORYCO
VFQPWIDAMNEELRMIEKNQTWKLVDMSEHKKPIGVKWVYRTKLNADGTINKHKARLVVK
GYAQIFGVDFSETFAPVARLDTIRMLLAVAAQKGWKIFQLDVKSAFLNGYLQEGIFVEQP
KGFVVRGEEEKVYLLKKALYGLKQAPRAWSRIDEHLLKLDFKKSLSESTLYIRNSNSDYI
VVSLYVDDLFVTGNNQSMIDNFKAEMMKVFEMTDLGEMAYFLGMEVQQNQHGIFICQQKY
AKEILKKFKM
>RT_Purbel#BelPao+NA
VLHVKLASPVDLTDFWKIESEGVNPTSCQCTQSGLTKQEAEEERIIRASSRKEGRQWEIA
YPWEKDPDLLPNNKFLAEKMLFAAERKLRKNPEHTEAYKSKIQEMTEMGFAKKLEKDEMT
MYKGPVHYISHHAVIRPDNKSTPLRIVFNSSAIYKGHCLNEYWKKGPDLLNNLFGVLLRF
REHPVAICADISKMYHRILIPERDQHVHRFLWRDMNQEKEPDVYMMKVVTFGDKPAAAMA
QIGVRLTAEEGEAKYPEAAAILKRNIYMDDICDSVETEDTAKKRIAEVDELLEAGGFKVK
GWQSNKPLDGGNKQEKMKLLEEIAEEKVLGVVWERHNDTFSYKVKLQETDKETEKLTKRK
ILGKVARIYDPIGFAAPIIIKAKTGLQKLWQSGYDWDEELPDGDEWRGLFREMSKLNDIS
LERCLKPQNAQGR
>RT_PVCV#Caulimovirus+NA
VDFLSKCSHPLWLNQDFFIQLPFKKNENINPTKASHSGMNPEHLQLAIKECDELQQFDLI
EPSDSQWACEAFYVNKRSEQVRGKLRLVINYQPLNHFLQDDKFPIPNKLTLFSHLSKAKL
FSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPIL
FSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADG
TFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKKKPPAW
G
>RT_PyERV#retrovirus+NA
LDNGHLEPSLSPYNTPVFVIKKKSGKWRLLHDLRAVNAIIKPMGALQCGLPNPNLIPQSY
DMMIIDLKDCFFSIPLHPKDKHIFAFTVPALNNSQPTSRYQWKVLPQGMLNSPTMCQYFV
SQVLQPYRDKYSSFLVYHYMDGILVATPGPKGTVLKTLPHLQRILQQGGLHIAPDKVQLS