nf-core-sarek.yml

pipelines:
  - name: "nf-core-sarek"
    url: "https://github.com/nf-core/sarek"
    description: "Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing."
    workspace: "seqeralabs/showcase"
    compute-envs: "seqera_azure_virginia_fusion"
    revision: "3.1.2"
    profile: "test"
    labels: ["germline", "variant-calling"]
    pre-run: "./pre-run.sh"
    params:
      outdir: "az://seqeralabs-showcase/nf-core-sarek/results"