nf-core-proteinfold.yml

pipelines:
  - name: "nf-core-proteinfold"
    url: "https://github.com/nf-core/proteinfold"
    description: "Protein 3D structure prediction pipeline."
    workspace: "seqeralabs/showcase"
    compute-envs: "seqera_aws_ireland_fusionv2_nvme_gpu"
    revision: "1.0.0"
    profile: "test_full"
    labels: ["gpu", "structure-prediction"]
    pre-run: "./pre-run.sh"
    params-file: "./nf-core-proteinfold-params.yml"
    config: "./nf-core-proteinfold.config"
    overwrite: False
  - name: "nf-core-proteinfold_full_db"
    url: "https://github.com/nf-core/proteinfold"
    description: "Protein 3D structure prediction pipeline."
    workspace: "seqeralabs/showcase"
    compute-envs: "seqera_aws_ireland_fusionv2_nvme_gpu"
    revision: "1.0.0"
    labels: ["gpu", "structure-prediction"]
    pre-run: "./pre-run.sh"
    config: "./nf-core-proteinfold.config"
    params:
      outdir: "s3://seqeralabs-showcase/nf-core-proteinfold/db"
      use_gpu: true
    overwrite: False