nf-core-proteinfold.json

{
  "description": "",
  "launch": {
    "pipeline": "https://github.com/nf-core/proteinfold",
    "revision": "1.0.0",
    "configProfiles": [
      "test_full"
    ],
    "userSecrets": [],
    "workspaceSecrets": [],
    "configText": "process {\n    withName: 'RUN_ALPHAFOLD2|RUN_ALPHAFOLD2_PRED|COLABFOLD_BATCH' {\n        accelerator = 1\n        queue = 'TowerForge-5ZfzTbavbsB9Tx7YRr2ut0-work'\n    }\n}",
    "paramsText": "input: 'https://api.tower.nf/workspaces/138659136604200/datasets/5Ig3IWRgjlgVjpURNF6CSN/v/1/n/samplesheet.csv'\noutdir: 's3://seqeralabs-showcase/nf-core-proteinfold/results'\nuse_gpu: true\nalphafold2_db: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini\"\nbfd_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/bfd/*\"\nsmall_bfd_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/small_bfd/*\"\nalphafold2_params_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/alphafold_params_*/*\"\nmgnify_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/mgnify/*\"\npdb70_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/pdb70/**\"\npdb_mmcif_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/pdb_mmcif/**\"\nuniclust30_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/uniclust30/**\"\nuniref90_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/uniref90/*\"\npdb_seqres_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/pdb_seqres/*\"\nuniprot_path: \"s3://ngi-igenomes/test-data/proteinfold/db/alphafold_mini/uniprot/*\"",
    "preRunScript": "yum install jq -y\nexport NXF_VER=$(curl -s https://api.github.com/repos/nextflow-io/nextflow/tags | jq -r '.[].name' | head -n 1 | cut -c2-)",
    "resume": false,
    "pullLatest": false,
    "stubRun": false
  }
}