diff --git a/src/chopper.cpp b/src/chopper.cpp index 0e7e5636..708b8e83 100644 --- a/src/chopper.cpp +++ b/src/chopper.cpp @@ -56,7 +56,8 @@ int main(int argc, char const * argv[]) chopper::sketch::check_filenames(filenames, config); - config.hibf_config.input_fn = chopper::input_functor{filenames, config.precomputed_files, config.k, config.window_size}; + config.hibf_config.input_fn = + chopper::input_functor{filenames, config.precomputed_files, config.k, config.window_size}; config.hibf_config.number_of_user_bins = filenames.size(); exit_code |= chopper::layout::execute(config, filenames); diff --git a/src/util/display_layout/general.cpp b/src/util/display_layout/general.cpp index 3528c8bf..4ed3f76f 100644 --- a/src/util/display_layout/general.cpp +++ b/src/util/display_layout/general.cpp @@ -297,7 +297,13 @@ int execute(config const & cfg) for (auto const & filename : filenames[user_bin.idx]) { - process_file(filename, current_kmer_set, current_kmers, sketch, fill_current_kmers, chopper_config.k, chopper_config.window_size); + process_file(filename, + current_kmer_set, + current_kmers, + sketch, + fill_current_kmers, + chopper_config.k, + chopper_config.window_size); } // Compute set intersection: shared_kmers = shared_kmers ∩ current_kmers diff --git a/src/util/display_layout/process_file.cpp b/src/util/display_layout/process_file.cpp index a43a7912..d9ee7ec2 100644 --- a/src/util/display_layout/process_file.cpp +++ b/src/util/display_layout/process_file.cpp @@ -97,7 +97,10 @@ void process_file(std::string const & filename, } } -void process_file(std::string const & filename, std::vector & current_kmers, uint8_t const kmer_size, uint8_t const window_size) +void process_file(std::string const & filename, + std::vector & current_kmers, + uint8_t const kmer_size, + uint8_t const window_size) { if (filename.ends_with(".minimiser")) { diff --git a/src/util/display_layout/shared.hpp b/src/util/display_layout/shared.hpp index 0e833a15..e7535786 100644 --- a/src/util/display_layout/shared.hpp +++ b/src/util/display_layout/shared.hpp @@ -25,7 +25,9 @@ struct config void execute_general(config const & cfg); void execute_sizes(config const & cfg); -void process_file(std::string const & filename, std::vector & current_kmers, uint8_t const kmer_size, +void process_file(std::string const & filename, + std::vector & current_kmers, + uint8_t const kmer_size, uint8_t const window_size); void process_file(std::string const & filename,