diff --git a/README.md b/README.md index f984cbc..eceec72 100644 --- a/README.md +++ b/README.md @@ -13,6 +13,10 @@ This folder contains the code to reconstruct the EMT trajectory of the bulk RNA- - **projection_EMT_trajectory_MCF10A_to_TCGA.R:** main script to reconstruct the EMT trajectory of TCGA samples using as reference single-cell MCF10 data and their defined EMT pseudospace (trajectory). This script performs also several exploratory analysis. - **namescript2.R:** - **run_analysis_pseudospace_TCGA_MET500.R:** procedure to quantify the EMT trajectory using TCGA and MET500 data +- **projection_EMT_trajectory_MCF10A_to_CCLE.R:** main script to reconstruct the EMT trajectory of CCLE samples using as reference single-cell MCF10 data and their defined EMT pseudospace (trajectory). This script performs also several exploratory analysis. This script combine also EMT states with the information of the metastatic potential. +- **knnForCCLE_MCF.R:** functions useful to run projection_EMT_trajectory_MCF10A_to_CCLE.R +- **petalChartGMT.R:** functions useful to run projection_EMT_trajectory_MCF10A_to_CCLE.R + ## HMM_macrostates_EMT This folder contains the code to perform the segmentation of the EMT trajectory and to identify the macrostates of EMT