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Y24-452 - As NPG and long read we would like the rebasecalling process field to be added to an ONT run so that we can decide some of the settings required for modified basecalling #1484

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stevieing opened this issue Nov 12, 2024 · 0 comments
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Enhancement New feature or request ONT ONT rebasecalling rebasecalling Size: S Small - low effort & risk Value: 3 Value to the insitute is average

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@stevieing
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User story

As NPG and long read we would like the rebasecalling process field to be added to an ONT run so that we can decide some of the settings required for modified basecalling

Who are the primary contacts for this story

Keith / Tavis / Steve

Who is the nominated tester for UAT

Tavis / Keith (NPG)

Acceptance criteria

Consider if these features can be featured flagged to decouple testing and deployment.
To be considered successful the solution must allow:

  • a new field to be added to the ont run table called rebasecalling_process
  • rebasecalling_process should be an enum with the options 5mC + 5hmC CpG-context, 5mC + 5hmC all-context and 6mA all-context
  • When an ont run is sent to the warehouse all the samples in that run should have the rebasecalling_process data

Dependencies

This story is blocked by the following dependencies:

  • #<issue_no.>
  • sanger/#<issue_no.>

References
This story has a non-blocking relationship with:

  • #<issue_no.>
  • sanger/#<issue_no.>

Additional context

Add any other context or screenshots about the feature request here.

@stevieing stevieing added Enhancement New feature or request ONT ONT Size: S Small - low effort & risk Value: 3 Value to the insitute is average labels Nov 12, 2024
@psd-issuer psd-issuer bot changed the title As NPG and long read we would like the rebasecalling process field to be added to an ONT run so that we can decide some of the settings required for modified basecalling Y24-452 - As NPG and long read we would like the rebasecalling process field to be added to an ONT run so that we can decide some of the settings required for modified basecalling Nov 12, 2024
@stevieing stevieing added the rebasecalling rebasecalling label Nov 12, 2024
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Labels
Enhancement New feature or request ONT ONT rebasecalling rebasecalling Size: S Small - low effort & risk Value: 3 Value to the insitute is average
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