Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

DPL-776 Investigate a way to identify Heron/RVI samples already in SequenceScape so that we can avoid problems during stamping from deep wells to shallow well plates for RVI. #775

Open
sdjmchattie opened this issue May 25, 2023 · 0 comments

Comments

@sdjmchattie
Copy link
Contributor

sdjmchattie commented May 25, 2023

Description
It was first thought that samples being imported for deep-well to shallow-well stamping could be avoided if they already exist in Sequencescape, but there are examples of plates that were imported by manifest in the earlier days that already have all their samples in Sequencescape and only some of those were sequenced. For example plate https://sequencescape.psd.sanger.ac.uk/labware/27052839 has samples like https://sequencescape.psd.sanger.ac.uk/samples/4434986 which were sequenced and https://sequencescape.psd.sanger.ac.uk/samples/4434987 that were not. Initial investigation seems to suggest that none of these samples exist in MongoDB but that should be confirmed. There is a spreadsheet of plates that are likely to be affected in this way. am64 emailed those to sm49 and as28 on 25th May at 11:14.

Primary contacts for this work
sm49 as28

Knowledge or Stake holders
am64 st2

Relates to:
https://rt.sanger.ac.uk/Ticket/Display.html?id=787131

@sdjmchattie sdjmchattie added RVI RVI Project Research labels May 25, 2023
@sdjmchattie sdjmchattie changed the title DPL-776 Investigate a way to identify picked samples to avoid during stamping DPL-776 Investigate a way to identify picked samples to avoid during stamping of manifest imported plates May 31, 2023
@TWJW-SANGER TWJW-SANGER changed the title DPL-776 Investigate a way to identify picked samples to avoid during stamping of manifest imported plates DPL-776 Investigate a way to identify Heron/RVI samples already in SequenceScape so that we can avoid problems during stamping from deep wells to shallow well plates for RVI. Aug 10, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants