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DPL-776 Investigate a way to identify Heron/RVI samples already in SequenceScape so that we can avoid problems during stamping from deep wells to shallow well plates for RVI.
#775
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sdjmchattie opened this issue
May 25, 2023
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Description
It was first thought that samples being imported for deep-well to shallow-well stamping could be avoided if they already exist in Sequencescape, but there are examples of plates that were imported by manifest in the earlier days that already have all their samples in Sequencescape and only some of those were sequenced. For example plate https://sequencescape.psd.sanger.ac.uk/labware/27052839 has samples like https://sequencescape.psd.sanger.ac.uk/samples/4434986 which were sequenced and https://sequencescape.psd.sanger.ac.uk/samples/4434987 that were not. Initial investigation seems to suggest that none of these samples exist in MongoDB but that should be confirmed. There is a spreadsheet of plates that are likely to be affected in this way. am64 emailed those to sm49 and as28 on 25th May at 11:14.
sdjmchattie
changed the title
DPL-776 Investigate a way to identify picked samples to avoid during stamping
DPL-776 Investigate a way to identify picked samples to avoid during stamping of manifest imported plates
May 31, 2023
TWJW-SANGER
changed the title
DPL-776 Investigate a way to identify picked samples to avoid during stamping of manifest imported plates
DPL-776 Investigate a way to identify Heron/RVI samples already in SequenceScape so that we can avoid problems during stamping from deep wells to shallow well plates for RVI.
Aug 10, 2023
Description
It was first thought that samples being imported for deep-well to shallow-well stamping could be avoided if they already exist in Sequencescape, but there are examples of plates that were imported by manifest in the earlier days that already have all their samples in Sequencescape and only some of those were sequenced. For example plate https://sequencescape.psd.sanger.ac.uk/labware/27052839 has samples like https://sequencescape.psd.sanger.ac.uk/samples/4434986 which were sequenced and https://sequencescape.psd.sanger.ac.uk/samples/4434987 that were not. Initial investigation seems to suggest that none of these samples exist in MongoDB but that should be confirmed. There is a spreadsheet of plates that are likely to be affected in this way. am64 emailed those to sm49 and as28 on 25th May at 11:14.
Primary contacts for this work
sm49 as28
Knowledge or Stake holders
am64 st2
Relates to:
https://rt.sanger.ac.uk/Ticket/Display.html?id=787131
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