diff --git a/queries/TAT-WOW-project/DBS/find_dbs_samples.sql b/queries/TAT-WOW-project/DBS/find_dbs_samples.sql index c3a0ff43..51302249 100644 --- a/queries/TAT-WOW-project/DBS/find_dbs_samples.sql +++ b/queries/TAT-WOW-project/DBS/find_dbs_samples.sql @@ -22,8 +22,14 @@ SELECT DISTINCT s.id AS ewh_sample_id, JOIN mlwhd_mlwarehouse_proddata.sample mlwh_sample ON mlwh_sample.uuid_sample_lims = gbs_samples.sample_uuid JOIN mlwhd_mlwarehouse_proddata.iseq_flowcell iseq_flowcell USING (id_sample_tmp) +-- Beware! If a new primer panel is used in the lab, this list will need to be updated. WHERE iseq_flowcell.primer_panel IN ('PFA_GRC1_v1.0', 'PFA_GRC2_v1.0', 'PFA_Spec', 'PVIV_GRC_1.0') ; -- 4,301 -- most recent vivax ones are from Feb 2021 - is this expected? -- SSR says "we get so few samples for vivax they are waiting a while. The panel is still good and used." +-- To find primer panel values, you can: + -- go to the bulk submission page in Sequencescape UI + -- select "Limber-Htp - GBS" as the submission template + -- look at the values in the 'primer panel' dropdown + -- an SSR can tell you which ones in the list are relevant