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Genome mappability #30

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priyanka-surana opened this issue May 2, 2022 · 4 comments
Open

Genome mappability #30

priyanka-surana opened this issue May 2, 2022 · 4 comments
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feature Requests for new features question Further information is requested

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@priyanka-surana
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priyanka-surana commented May 2, 2022 •
edited by muffato
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Description of feature

It is equal to percentage of reads mapped to the genome.
Possible software: WGSIM
@priyanka-surana priyanka-surana added enhancement Improvement of the existing features question Further information is requested labels May 2, 2022
@priyanka-surana
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It is already calculated by GRIT. Where do we find this information?

@muffato
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muffato commented May 4, 2022

GRIT typically record things in their Jira server. Double-check with Jo if they do it on the final assembly

@priyanka-surana
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https://github.com/eeaunin/gda/blob/main/feature_extraction/run_wgsim.py

@priyanka-surana priyanka-surana pinned this issue Nov 7, 2022
@priyanka-surana priyanka-surana mentioned this issue Nov 25, 2022
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@priyanka-surana priyanka-surana unpinned this issue Dec 1, 2022
@muffato muffato added feature Requests for new features and removed enhancement Improvement of the existing features labels Jun 1, 2024
@tkchafin
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tkchafin commented Sep 9, 2024

Probably faster option? https://github.com/cpockrandt/genmap

@muffato muffato transferred this issue from sanger-tol/genomenote Dec 6, 2024
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Labels
feature Requests for new features question Further information is requested
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Genome After Party
Status: Triage
genomenote
Status: To do
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@muffato @tkchafin @priyanka-surana