diff --git a/modules/local/pacbio_filter.nf b/modules/local/pacbio_filter.nf index 18dd11c..e4deaa4 100644 --- a/modules/local/pacbio_filter.nf +++ b/modules/local/pacbio_filter.nf @@ -5,7 +5,7 @@ process PACBIO_FILTER { conda "conda-forge::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/gawk:5.1.0' : - 'quay.io/biocontainers/gawk:5.1.0' }" + 'biocontainers/gawk:5.1.0' }" input: tuple val(meta), path(txt) diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf index 9c44c61..f0a3073 100644 --- a/modules/local/samplesheet_check.nf +++ b/modules/local/samplesheet_check.nf @@ -5,7 +5,7 @@ process SAMPLESHEET_CHECK { conda "conda-forge::python=3.8.3" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/python:3.8.3' : - 'quay.io/biocontainers/python:3.8.3' }" + 'biocontainers/python:3.8.3' }" input: path samplesheet diff --git a/modules/local/samtools_sormadup.nf b/modules/local/samtools_sormadup.nf index c5a31ef..5aadab5 100644 --- a/modules/local/samtools_sormadup.nf +++ b/modules/local/samtools_sormadup.nf @@ -7,7 +7,7 @@ process SAMTOOLS_SORMADUP { conda "bioconda::samtools=1.17" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/samtools:1.17--h00cdaf9_0' : - 'quay.io/biocontainers/samtools:1.17--h00cdaf9_0' }" + 'biocontainers/samtools:1.17--h00cdaf9_0' }" input: tuple val(meta), path(input) diff --git a/modules/local/unmask.nf b/modules/local/unmask.nf index 482eefc..72d1a07 100644 --- a/modules/local/unmask.nf +++ b/modules/local/unmask.nf @@ -5,7 +5,7 @@ process UNMASK { conda "conda-forge::gawk=5.1.0" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/gawk:5.1.0' : - 'quay.io/biocontainers/gawk:5.1.0' }" + 'biocontainers/gawk:5.1.0' }" input: tuple val(meta), path(fasta)