MitoHiFi -a parameter

[nikostr]

Description of the bug

When attempting to run MitoHiFi it crashes with the following error message:

  'parsed_blast.txt' and 'parsed_blast_all.txt' files are empty.
  The pipeline has stopped !! You need to run further scripts to check if you have mito reads pulled to a large NUMT!

In marcelauliano/MitoHiFi#58 the MitoHiFi author suggests that this may have to do with the -a parameter being incorrectly set. Would it make sense to allow users to pass this parameter as a part of the config?

Command used and terminal output

No response

Relevant files

No response

System information

No response

[nikostr]

Just confirmed that adding this parameter solves my issue. My workaround was providing it as a part of the code parameter in the input yaml:

code: "1 -a plant "