ERROR ~ Execution aborted due to an unexpected error - Check script

[Surbhigrewal]

Description of the bug

I was trying to use the pipeline to make the files for pretext but got an error that aborted execution of the pipeline.

Command used and terminal output

nextflow run sanger-tol/curationpretext \
  --input assembly.fasta \
  --cram hic.cram \
  --longread hifi.fasta.gz \
  --longread_type hifi \
  --sample V10 \
  --teloseq TTTAGGG \
  --outdir output_dir \
  -profile singularity

Execution cancelled -- Finishing pending tasks before exit
-[sanger-tol/curationpretext] Pipeline completed with errors-
-[sanger-tol/curationpretext] Pipeline completed with errors-
ERROR ~ Execution aborted due to an unexpected error

Relevant files

.nextflow.log
slurm-1817064.out.zip

System information

HPC