From 1757379bdcc12bc3c0d56bf41a94328cb0d39635 Mon Sep 17 00:00:00 2001
From: yumisims <yy5@sanger.ac.uk>
Date: Thu, 10 Oct 2024 15:02:33 +0100
Subject: [PATCH] fixed typo in readme

---
 README.md | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index fc8ff98..ee16184 100755
--- a/README.md
+++ b/README.md
@@ -49,7 +49,7 @@ Currently, the pipeline uses the following flags:
 
 - `--map_order`
 
-  - hic map scaffold order, e.g., `length`
+  - hic map scaffold order, e.g., `length` or `unsorted`
 
 - `--teloseq`
 
@@ -70,8 +70,8 @@ nextflow run sanger-tol/curationpretext \
   --longread { path/to/longread/fasta/ } \
   --longread_type { default is "hifi" }
   --sample { default is "pretext_rerun" } \
-  --teloseq { deafault is "TTAGGG" } \
-  --map_order { deafault is "unsorted" } \
+  --teloseq { default is "TTAGGG" } \
+  --map_order { default is "unsorted" } \
   --outdir { OUTDIR } \
   -profile <docker/singularity/{institute}>
 
@@ -86,8 +86,8 @@ nextflow run sanger-tol/curationpretext \
   --longread { path/to/longread/fasta/ } \
   --longread_type { default is "hifi" }
   --sample { default is "pretext_rerun" } \
-  --teloseq { deafault is "TTAGGG" } \
-  --map_order { deafault is "unsorted" } \
+  --teloseq { default is "TTAGGG" } \
+  --map_order { default is "unsorted" } \
   --outdir { OUTDIR } \
   -profile <docker/singularity/{institute}> \
   -entry MAPS_ONLY \