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I have ran BTK v0.6.0 using this samplesheet:
sample,datatype,datafile
ToLID8,hic,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/hic_1.fastq.gz
ToLID8,hic,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/hic_2.fastq.gz
ToLID8,illumina,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/illumina_1.fastq.gz
ToLID8,illumina,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/illumina_2.fastq.gz
ToLID8,ont,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/ont_filt.fastq.gz
When I visualize the blobplots the coverage axis are named as T1-T5...Each data fastq received the number of the row where it is placed in the samplesheet: T1 corresponding to hic read1 and T5 to the ONT. Is it be possible to give each read type a more infromative name such as ONT_cov in the results? It will help for a more straightforward interpretation of the plots.
Thanks
Fernando
The text was updated successfully, but these errors were encountered:
Description of feature
Hi,
I have ran BTK v0.6.0 using this samplesheet:
sample,datatype,datafile
ToLID8,hic,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/hic_1.fastq.gz
ToLID8,hic,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/hic_2.fastq.gz
ToLID8,illumina,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/illumina_1.fastq.gz
ToLID8,illumina,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/illumina_2.fastq.gz
ToLID8,ont,/scratch_isilon/groups/assembly/data/projects/BGE/ToLID/assembly/curation/nextdenovo.hypo1.purged.yahs_mq10/1_blobtoolkit/blobtoolkit_nextflow/ont_filt.fastq.gz
When I visualize the blobplots the coverage axis are named as T1-T5...Each data fastq received the number of the row where it is placed in the samplesheet: T1 corresponding to hic read1 and T5 to the ONT. Is it be possible to give each read type a more infromative name such as ONT_cov in the results? It will help for a more straightforward interpretation of the plots.
Thanks
Fernando
The text was updated successfully, but these errors were encountered: