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Database parametrisation #110

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muffato opened this issue Aug 16, 2024 · 0 comments · Fixed by #121
Closed

Database parametrisation #110

muffato opened this issue Aug 16, 2024 · 0 comments · Fixed by #121
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@tkchafin
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enhancement Improvement of the existing features testing Code testing

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@muffato
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muffato commented Aug 16, 2024

Description of feature

Normally, the test profile should work out of the box for anyone. For required databases, especially in the test profile, we should allow the database to be passed as a remote .tar.gz that is untarred within the pipeline.

We can take inspiration from the nf-core/taxprofiler pipeline:
@muffato muffato added enhancement Improvement of the existing features testing Code testing labels Aug 16, 2024
@tkchafin tkchafin self-assigned this Sep 23, 2024
@tkchafin tkchafin mentioned this issue Nov 11, 2024
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@tkchafin tkchafin linked a pull request Nov 11, 2024 that will close this issue
Db params #121
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10 tasks
@tkchafin tkchafin moved this from Todo to In Progress in Genome After Party Nov 11, 2024
@github-project-automation github-project-automation bot moved this from In Progress to Done in Genome After Party Nov 22, 2024
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enhancement Improvement of the existing features testing Code testing
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Db params tkchafin/blobtoolkit
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