diff --git a/subworkflows/local/busco_diamond_blastp.nf b/subworkflows/local/busco_diamond_blastp.nf index 4b07723e..2e1a442d 100644 --- a/subworkflows/local/busco_diamond_blastp.nf +++ b/subworkflows/local/busco_diamond_blastp.nf @@ -47,12 +47,11 @@ workflow BUSCO_DIAMOND { ch_fasta_with_lineage, "genome", ch_fasta_with_lineage.map { it[0].lineage_name }, - busco_db, + busco_db.first(), [], ) ch_versions = ch_versions.mix ( BUSCO.out.versions.first() ) - // // Tidy up the BUSCO output directories before publication // diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf index aedb313f..9047208a 100644 --- a/subworkflows/local/input_check.nf +++ b/subworkflows/local/input_check.nf @@ -63,8 +63,6 @@ workflow INPUT_CHECK { taxdump: db_meta.type == "taxdump" } - ch_databases.blastp.view() - // // SUBWORKFLOW: Process samplesheet diff --git a/workflows/blobtoolkit.nf b/workflows/blobtoolkit.nf index 6c0b4127..d9effaa4 100644 --- a/workflows/blobtoolkit.nf +++ b/workflows/blobtoolkit.nf @@ -35,7 +35,7 @@ if (params.lineage_tax_ids) { ch_lineage_tax_ids = Channel.fromPath(params.linea // Create channel for optional parameters if (params.busco_lineages) { ch_busco_lin = Channel.value(params.busco_lineages) } else { ch_busco_lin = Channel.value([]) } if (params.busco) { - ch_busco_db = Channel.fromPath(params.busco).map { tuple([ "type": "busco"], it ) } + ch_busco_db = Channel.fromPath(params.busco).first().map { tuple([ "type": "busco"], it ) } } else { ch_busco_db = Channel.value([]) }