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V1.1.0 - [REFACTOR] - Major refactor #44

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DLBPointon opened this issue Mar 19, 2024 · 1 comment · May be fixed by #65
Open

V1.1.0 - [REFACTOR] - Major refactor #44

DLBPointon opened this issue Mar 19, 2024 · 1 comment · May be fixed by #65
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@eeaunin @DLBPointon
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enhancement New feature or request

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Description of feature

Currently the pipeline needs one entire instance to run each of [Hap1, Hap2, mito, chloro, {number of cobionts id'ed}]. Pipeline should therefore be refactored so that these can all be dynamically run on a singular head job.

FCS can also run sequentially on multiple inputs, so this should be utilised.

We should look at this once the current version of the pipeline can create a usable output.
@DLBPointon DLBPointon added the enhancement New feature or request label Mar 19, 2024
@DLBPointon DLBPointon changed the title [REFACTOR] - Major refactor V1.1.0 - [REFACTOR] - Major refactor Apr 19, 2024
@DLBPointon DLBPointon linked a pull request Nov 13, 2024 that will close this issue
ASCC multi-assembly re-write #65
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#65 does this

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ASCC multi-assembly re-write sanger-tol/ascc
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@eeaunin @DLBPointon