From e6550bff264d1c7f5cee22963ff4d8cf712790b4 Mon Sep 17 00:00:00 2001 From: DLBPointon Date: Thu, 4 Apr 2024 10:27:41 +0100 Subject: [PATCH] Updating data --- .github/workflows/ci.yml | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 53ac0db..c605ae0 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -38,7 +38,7 @@ jobs: - name: Download test data # Download A fungal test data set that is full enough to show some real output. run: | - curl https://tolit.cog.sanger.ac.uk/test-data/resources/ascc/asccTinyTest.tar.gz | tar xzf - + curl https://tolit.cog.sanger.ac.uk/test-data/resources/ascc/asccTinyTest_V2.tar.gz | tar xzf - - name: Download the NCBI taxdump database run: | @@ -72,7 +72,12 @@ jobs: - name: Download the pacbio barcode run: | mkdir pacbio_barcode - wget -O pacbio_barcode/SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip -c https://www.pacb.com/wp-content/uploads/SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip && cd pacbio_barcode && unzip SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip && mv SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta pacbio_adaptors.fa && rm -rf SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip __MACOSX && cd .. + wget -O pacbio_barcode/SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip -c https://www.pacb.com/wp-content/uploads/SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip + cd pacbio_barcode + unzip SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip + mv SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta pacbio_adaptors.fa + rm -rf SMRTbell_Barcoded_Adapter_Plate_3.0_bc2001-bc2096.fasta_.zip __MACOSX + cd ../ - name: Download the subset of Diamond database run: |