diff --git a/bin/gc_content.py b/bin/gc_content.py index b2f786b..0289d3e 100644 --- a/bin/gc_content.py +++ b/bin/gc_content.py @@ -1,6 +1,10 @@ #!/usr/bin/env python3 """ Script for finding the GC content of each sequence in a multiFASTA file + +Written by Eerik Aunin @eeaunin + +Adapted by Damon-Lee Pointon @DLBPointon """ import argparse diff --git a/modules.json b/modules.json index dab76c6..1bcb845 100644 --- a/modules.json +++ b/modules.json @@ -8,132 +8,96 @@ "blast/blastn": { "branch": "master", "git_sha": "1728df69ccbaf4ccb1027c6fd4e9191f48c22194", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "blast/makeblastdb": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "custom/dumpsoftwareversions": { "branch": "master", "git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "custom/getchromsizes": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "diamond/blastx": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "fastqc": { "branch": "master", "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "fcs/fcsadaptor": { "branch": "master", "git_sha": "5a35af8b60d45425c4b9193e567d16b614d93dbe", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "gnu/sort": { "branch": "master", "git_sha": "88f6e982fb8bd40488d837b3b08a65008e602840", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "kraken2/kraken2": { "branch": "master", "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220", - "installed_by": [ - "modules" - ], + "installed_by": ["modules"], "patch": "modules/nf-core/kraken2/kraken2/kraken2-kraken2.diff" }, "minimap2/align": { "branch": "master", "git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "minimap2/index": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "multiqc": { "branch": "master", "git_sha": "f2d63bd5b68925f98f572eed70993d205cc694b7", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "samtools/depth": { "branch": "master", "git_sha": "a1ffbc1fd87bd5a829e956cc26ec9cc53af3e817", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "samtools/faidx": { "branch": "master", "git_sha": "fd742419940e01ba1c5ecb172c3e32ec840662fe", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "samtools/index": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "samtools/sort": { "branch": "master", "git_sha": "a0f7be95788366c1923171e358da7d049eb440f9", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "seqkit/sliding": { "branch": "master", "git_sha": "0aa251c4ce7318c86b9868d8cb8dd6dd5d7da849", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] }, "tiara/tiara": { "branch": "master", "git_sha": "911696ea0b62df80e900ef244d7867d177971f73", - "installed_by": [ - "modules" - ] + "installed_by": ["modules"] } } } } } -} \ No newline at end of file +}