From 568d701e0b9d46fd4452002c45d8820185b8a55e Mon Sep 17 00:00:00 2001
From: DLBPointon <damonlbp@hotmail.co.uk>
Date: Thu, 21 Nov 2024 12:38:04 +0000
Subject: [PATCH] Updating modules and fixing blast_lineage bug

---
 .../blast/makeblastdb/blast-makeblastdb.diff  | 20 +++++++++++++++++++
 modules/nf-core/multiqc/tests/nextflow.config |  5 +++++
 2 files changed, 25 insertions(+)
 create mode 100644 modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
 create mode 100644 modules/nf-core/multiqc/tests/nextflow.config

diff --git a/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff b/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
new file mode 100644
index 0000000..0b324dd
--- /dev/null
+++ b/modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff
@@ -0,0 +1,20 @@
+Changes in module 'nf-core/blast/makeblastdb'
+'modules/nf-core/blast/makeblastdb/meta.yml' is unchanged
+Changes in 'blast/makeblastdb/main.nf':
+--- modules/nf-core/blast/makeblastdb/main.nf
++++ modules/nf-core/blast/makeblastdb/main.nf
+@@ -27,6 +27,7 @@
+         gzip -c -d ${fasta} > ${fasta_name}
+     fi
+ 
++    rm -rf ${prefix}
+     makeblastdb \\
+         -in ${fasta_name} \\
+         ${args}
+
+'modules/nf-core/blast/makeblastdb/environment.yml' is unchanged
+'modules/nf-core/blast/makeblastdb/tests/main.nf.test' is unchanged
+'modules/nf-core/blast/makeblastdb/tests/tags.yml' is unchanged
+'modules/nf-core/blast/makeblastdb/tests/nextflow.config' is unchanged
+'modules/nf-core/blast/makeblastdb/tests/main.nf.test.snap' is unchanged
+************************************************************
diff --git a/modules/nf-core/multiqc/tests/nextflow.config b/modules/nf-core/multiqc/tests/nextflow.config
new file mode 100644
index 0000000..c537a6a
--- /dev/null
+++ b/modules/nf-core/multiqc/tests/nextflow.config
@@ -0,0 +1,5 @@
+process {
+    withName: 'MULTIQC' {
+        ext.prefix = null
+    }
+}