From 27b9129510162d1a2b1ab4d8adc6d27f70ee5e84 Mon Sep 17 00:00:00 2001
From: DLBPointon <damonlbp@hotmail.co.uk>
Date: Thu, 14 Nov 2024 11:58:10 +0000
Subject: [PATCH] Adding a test function to parse nextflow version and resouce
 requirements

---
 .github/workflows/ci.yml | 2 +-
 conf/test.config         | 8 ++++++++
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 953811b..d13e810 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -139,4 +139,4 @@ jobs:
         # For example: adding multiple test runs with different parameters
         # Remember that you can parallelise this by using strategy.matrix
         run: |
-          nextflow run ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/main.nf -profile test,singularity -params-file ./sanger-ascc/assets/test.yaml
+          nextflow run ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/main.nf -profile test,singularity -params-file ./sanger-ascc/${{ steps.branch-names.outputs.current_branch }}/assets/test.yaml
diff --git a/conf/test.config b/conf/test.config
index d79d723..a3593a5 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -10,6 +10,14 @@
 ----------------------------------------------------------------------------------------
 */
 
+process {
+    resourceLimits = [
+        cpus    = 4
+        memory  = '8.GB'
+        time    = '6.h'
+    ]
+}
+
 params {
     config_profile_name        = 'Test profile'
     config_profile_description = 'Minimal test dataset to check pipeline function'