diff --git a/.gitignore b/.gitignore index deec0ac..de5fc34 100644 --- a/.gitignore +++ b/.gitignore @@ -11,3 +11,4 @@ data tests/test_data/output/*.txt tests/regression_test_data/test_data **/__pycache__ +*.img diff --git a/nextflow.config b/nextflow.config index 5f186b9..73c402b 100644 --- a/nextflow.config +++ b/nextflow.config @@ -89,6 +89,8 @@ profiles { enabled = true autoMounts = true cacheDir = "$PWD" + // Prevent mkfifo failure in srst2 with Nextflow 23+ and Singularity + runOptions = '-B $(mktemp -d):/tmp' } } }