From 7a7377db4586f08f14afb63b04c852a1051b3801 Mon Sep 17 00:00:00 2001
From: James Glover <james.glover@sanger.ac.uk>
Date: Fri, 20 May 2016 14:32:00 +0100
Subject: [PATCH 1/2] Enable user serach

---
 app/controllers/search_controller.rb | 13 +++++++++++++
 config/environments/development.rb   |  2 +-
 2 files changed, 14 insertions(+), 1 deletion(-)

diff --git a/app/controllers/search_controller.rb b/app/controllers/search_controller.rb
index ef2b34a..a74cf70 100644
--- a/app/controllers/search_controller.rb
+++ b/app/controllers/search_controller.rb
@@ -27,6 +27,19 @@ def stock_plates(search='Find Illumina-C stock plates')
     )
   end
 
+  def my_plates(search = 'Find Illumina-C plates for user')
+    plate_search    = api.search.find(Settings.searches[search])
+    states = [ 'pending', 'started', 'passed', 'started_fx', 'started_mj', 'qc_complete', 'nx_in_progress']
+
+    @search_results = plate_search.all(
+      IlluminaC::Plate,
+     :state     => states,
+     :user_uuid => current_user_uuid
+    )
+
+    render :my_plates
+  end
+
   def create_or_find
     params['show-my-plates'] == 'true' ? my_plates : create
 
diff --git a/config/environments/development.rb b/config/environments/development.rb
index be11ab1..2d39647 100644
--- a/config/environments/development.rb
+++ b/config/environments/development.rb
@@ -26,7 +26,7 @@
   config.api_connection_options               = ActiveSupport::OrderedOptions.new
   config.api_connection_options.namespace     = 'IlluminaC'
   config.api_connection_options.url           = 'http://localhost:3000/api/1/'
-  config.api_connection_options.authorisation = 'development'
+  config.api_connection_options.authorisation = ENV.fetch('AUTHORISATION_TOKEN','development')
 
 
   # Email settings...

From 4a1207109c6ab39217a12be0c5ec0cb7436053bf Mon Sep 17 00:00:00 2001
From: James Glover <james.glover@sanger.ac.uk>
Date: Mon, 23 May 2016 10:40:45 +0100
Subject: [PATCH 2/2] ss459 - Add links back to SS

---
 app/helpers/application_helper.rb            | 9 +++++++++
 app/views/plates/_plate_information.html.erb | 2 ++
 config/application.rb                        | 2 ++
 config/environments/development.rb           | 5 ++++-
 4 files changed, 17 insertions(+), 1 deletion(-)

diff --git a/app/helpers/application_helper.rb b/app/helpers/application_helper.rb
index 3d8f6e5..ca66450 100644
--- a/app/helpers/application_helper.rb
+++ b/app/helpers/application_helper.rb
@@ -35,4 +35,13 @@ def custom_theme
     yield 'nonproduction' unless Rails.env == 'production'
   end
 
+  def details_path(labware)
+    IlluminaCPipeline::Application.config.details_root+labware.uuid
+  end
+
+  def summary_path(labware)
+    stock_barcode = labware.stock_plate.barcode.prefix + labware.stock_plate.barcode.number
+    IlluminaCPipeline::Application.config.summary_root+stock_barcode
+  end
+
 end
diff --git a/app/views/plates/_plate_information.html.erb b/app/views/plates/_plate_information.html.erb
index 8f7fba6..0c5c60b 100644
--- a/app/views/plates/_plate_information.html.erb
+++ b/app/views/plates/_plate_information.html.erb
@@ -10,4 +10,6 @@
   <li><span class="label">Input plate barcode</span> <span class="barcode"><%= useful_barcode(plate.stock_plate.barcode) %></span></li>
 <% end %>
   <li><span class="label">Created on</span>          <%= plate.created_at.to_formatted_s(:date_created) %>
+  <li><span class="label">More details</span>        <%= link_to "Details", details_path(plate) %></li>
+  <li><span class="label">Summary</span>             <%= link_to "Summary", summary_path(plate) %></li>
 </ul>
diff --git a/config/application.rb b/config/application.rb
index 415b0ea..93aab02 100644
--- a/config/application.rb
+++ b/config/application.rb
@@ -45,6 +45,8 @@ class Application < Rails::Application
 
     config.study_uuid = nil
     config.project_uuid = nil
+    config.details_root = '#'
+    config.summary_root = '#'
 
     # Allow state_machine to override methods like Object#fail in models
     StateMachine::Machine.ignore_method_conflicts = true
diff --git a/config/environments/development.rb b/config/environments/development.rb
index 2d39647..dbc5ffe 100644
--- a/config/environments/development.rb
+++ b/config/environments/development.rb
@@ -25,9 +25,12 @@
 
   config.api_connection_options               = ActiveSupport::OrderedOptions.new
   config.api_connection_options.namespace     = 'IlluminaC'
-  config.api_connection_options.url           = 'http://localhost:3000/api/1/'
+  config.api_connection_options.url           = ENV.fetch('API_URL','http://localhost:3000/api/1/')
   config.api_connection_options.authorisation = ENV.fetch('AUTHORISATION_TOKEN','development')
 
+  config.details_root = ENV.fetch('DETAILS_ROOT','http://localhost:3000/uuids/')
+  config.summary_root = ENV.fetch('SUMMARY_ROOT','http://localhost:3000/plate_summaries/')
+
 
   # Email settings...
   config.action_mailer.raise_delivery_errors = true