Scripts for passing single cell analyses from R objects to python packages and back.
In order to run these scripts users must have python installed. The following R packages are required for communication with python installation and running scripts.
# Install R packages
install.packages("Seurat")
install.packages("scCustomize")
install.packages("reticulate")
Scripts are present for the following python packages/workflows:
- anticor/pyminer_norm (Detection of anticorrelated features).
- scDRS (Calculate disease relevance score at single cell level).
- More to come!
Time permitting (and approved by original authors) I may turn this repo into R package, ideally on CRAN. However, for now code can be copied from provided scripts.