8. Taxonomic analysis.sh

# the classifier
wget \
  -O "gg-13-8-99-515-806-nb-classifier.qza" \
  "https://data.qiime2.org/2023.5/common/gg-13-8-99-515-806-nb-classifier.qza"


qiime feature-classifier classify-sklearn \
  --i-classifier gg-13-8-99-515-806-nb-classifier.qza \
  --i-reads rep-seqs.qza \
  --o-classification taxonomy.qza

qiime metadata tabulate \
  --m-input-file taxonomy.qza \
  --o-visualization taxonomy.qzv




#Output artifacts:

#   taxonomy.qza

#    gg-13-8-99-515-806-nb-classifier.qza

#Output visualizations:

#    taxonomy.qzv

qiime taxa barplot \
  --i-table table.qza \
  --i-taxonomy taxonomy.qza \
  --m-metadata-file sample-metadata.tsv \
  --o-visualization taxa-bar-plots.qzv

# Output visualizations:

    taxa-bar-plots.qzv