how can liana be applied to mouse dataset?

[Wulin-Tan]

Hi, Liana is perfect for investigating the CCC. but how can it be applied to mouse dataset?
Thanks a lot.

[dbdimitrov]

Hi @Wulin-Tan,

Thanks. I recently wrote this tutorial on conversion to murine orthologs:
https://saezlab.github.io/liana/articles/liana_ortho.html

I hope this helps.

Best,
Daniel

[dbdimitrov]

Note that a human-murine symbol dictionary is also included in LIANA.

[Wulin-Tan]

Hi, @dbdimitrov
I just saw that tutorial, it is wonderful!
thank you very much.

[trudy89]

@dbdimitrov I tried https://saezlab.github.io/liana/articles/liana_ortho.html
it doesn't work, a lot of errors.
could you successfully run following code?
op_resource <- select_resource("Consensus")[[1]]
ortholog_resource <- generate_homologs(op_resource = op_resource,
target_organism = 10090) # mouse

[jreimertz]

@trudy89 I was able to get this to work by installing from this PR #174

remotes::install_github('saezlab/liana#174')

As mentioned in this issue #170